Wall clock time and date at job start Sat Mar 6 2021 19:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 5 5 C 1.32774 * 124.71107 * 64.99989 * 4 2 1 6 6 C 1.44424 * 113.07942 * 179.97438 * 5 4 2 7 7 C 1.47193 * 123.45725 * 180.02562 * 6 5 4 8 8 O 1.21637 * 120.00032 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99905 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00157 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.84507 * 23.80184 * 10 9 7 12 12 C 1.53778 * 113.61423 * 154.99708 * 10 9 7 13 13 C 1.53782 * 87.07884 * 89.12046 * 12 10 9 14 14 H 1.09004 * 113.61240 * 270.88191 * 13 12 10 15 15 S 1.81401 * 113.61431 * 139.98296 * 13 12 10 16 16 C 1.76203 * 102.99684 * 174.99943 * 15 13 12 17 17 C 1.38972 * 120.08142 * 359.72228 * 16 15 13 18 18 C 1.38085 * 119.91679 * 179.72724 * 17 16 15 19 19 C 1.38304 * 120.08116 * 0.52571 * 18 17 16 20 20 C 1.38307 * 120.15931 * 359.76913 * 19 18 17 21 21 C 1.38085 * 120.07920 * 359.95705 * 20 19 18 22 22 C 1.53780 * 87.08413 * 25.42984 * 13 12 10 23 23 C 1.36013 * 113.08157 * 0.02562 * 6 5 4 24 24 S 1.70444 * 110.81597 * 359.72688 * 23 6 5 25 25 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 26 26 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 27 27 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 28 28 H 1.48497 * 109.99780 * 181.31712 * 3 2 1 29 29 H 1.07994 * 123.45699 * 359.97438 * 5 4 2 30 30 H 0.97006 * 120.00347 * 359.97438 * 9 7 6 31 31 H 1.09003 * 113.61325 * 203.66358 * 12 10 9 32 32 H 1.08994 * 113.61772 * 334.48868 * 12 10 9 33 33 H 1.07996 * 120.04092 * 0.02562 * 17 16 15 34 34 H 1.07998 * 119.95999 * 180.28031 * 18 17 16 35 35 H 1.07997 * 119.91980 * 179.74782 * 19 18 17 36 36 H 1.07998 * 119.95903 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.03711 * 179.97438 * 21 20 19 38 38 H 1.08992 * 113.61608 * 220.02078 * 22 13 12 39 39 H 1.09003 * 113.61555 * 89.11339 * 22 13 12 40 40 H 1.08005 * 124.58680 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7485 -2.0003 1.4864 6 6 2.3365 -2.4182 2.7376 7 6 2.2704 -3.7985 3.2444 8 8 1.6982 -4.6565 2.5993 9 7 2.8440 -4.1118 4.4231 10 6 2.7788 -5.4858 4.9272 11 1 2.6312 -6.2205 4.1356 12 6 3.9207 -5.8423 5.8935 13 6 3.0173 -5.3272 7.0264 14 1 3.1311 -4.2615 7.2253 15 16 3.0908 -6.3380 8.5309 16 6 2.0925 -5.4325 9.6659 17 6 1.4952 -4.2412 9.2715 18 6 0.7089 -3.5372 10.1619 19 6 0.5242 -4.0107 11.4482 20 6 1.1220 -5.1927 11.8460 21 6 1.9051 -5.9050 10.9593 22 6 1.8218 -5.6602 6.1183 23 6 2.9575 -1.4052 3.3995 24 16 2.8455 0.0510 2.5208 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5139 -0.8900 27 1 1.5614 2.4679 1.2084 28 1 3.5345 1.7703 -0.0321 29 1 1.2148 -2.6684 0.8267 30 1 3.3007 -3.4277 4.9374 31 1 4.1264 -6.9112 5.9509 32 1 4.8205 -5.2454 5.7452 33 1 1.6419 -3.8690 8.2683 34 1 0.2407 -2.6137 9.8547 35 1 -0.0880 -3.4559 12.1437 36 1 0.9760 -5.5592 12.8514 37 1 2.3719 -6.8277 11.2708 38 1 1.0268 -4.9153 6.1524 39 1 1.4537 -6.6793 6.2371 40 1 3.4576 -1.5104 4.3510 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525224_6894386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:48:59 Heat of formation + Delta-G solvation = 27.725460 kcal Electronic energy + Delta-G solvation = -24238.380767 eV Core-core repulsion = 20624.564393 eV Total energy + Delta-G solvation = -3613.816374 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.064 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.44015 -39.89274 -39.64389 -38.52254 -37.16882 -34.49413 -32.11918 -31.92399 -31.81765 -27.21634 -27.02516 -26.94779 -25.26463 -23.70738 -23.43888 -22.14217 -20.81387 -20.58822 -18.77930 -18.73424 -18.49781 -18.28945 -17.64494 -16.90309 -16.57210 -16.26352 -16.00653 -15.92556 -15.78745 -15.56780 -14.92345 -14.82518 -14.48674 -14.36144 -14.23165 -14.00450 -13.92913 -13.80792 -13.73314 -13.57002 -13.24406 -12.70727 -12.37040 -12.28699 -12.15285 -12.10423 -11.99444 -11.72928 -11.12466 -10.98719 -10.75000 -10.53185 -10.24203 -10.03731 -9.97519 -9.57903 -8.38130 -5.34466 -0.44110 0.22809 0.30192 0.37955 0.50232 0.65376 0.84082 1.08847 1.34112 1.47750 1.78187 1.93396 2.26975 2.73379 3.13487 3.15478 3.21696 3.53884 3.58068 3.64796 3.75832 3.86694 3.89824 3.95065 4.14137 4.19243 4.28810 4.31976 4.41691 4.49646 4.51011 4.56656 4.61703 4.64216 4.74341 4.76513 4.85054 4.98494 4.99254 5.15521 5.26483 5.38919 5.40154 5.53363 5.91137 6.32084 6.48158 7.11155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.035 4.035 3 Si 0.671 3.329 4 C -0.197 4.197 5 C -0.049 4.049 6 C -0.155 4.155 7 C 0.584 3.416 8 O -0.525 6.525 9 N -0.711 5.711 10 C 0.127 3.873 11 H 0.116 0.884 12 C -0.115 4.115 13 C -0.108 4.108 14 H 0.110 0.890 15 S -0.103 6.103 16 C -0.083 4.083 17 C -0.133 4.133 18 C -0.101 4.101 19 C -0.125 4.125 20 C -0.100 4.100 21 C -0.102 4.102 22 C -0.137 4.137 23 C -0.204 4.204 24 S 0.179 5.821 25 H 0.385 0.615 26 H 0.086 0.914 27 H -0.234 1.234 28 H -0.238 1.238 29 H 0.159 0.841 30 H 0.399 0.601 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 4.644 -1.390 5.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.148 4.148 3 Si 0.570 3.430 4 C -0.313 4.313 5 C -0.078 4.078 6 C -0.173 4.173 7 C 0.370 3.630 8 O -0.402 6.402 9 N -0.363 5.363 10 C 0.019 3.981 11 H 0.134 0.866 12 C -0.154 4.154 13 C -0.237 4.237 14 H 0.128 0.872 15 S 0.144 5.856 16 C -0.196 4.196 17 C -0.156 4.156 18 C -0.121 4.121 19 C -0.145 4.145 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.178 4.178 23 C -0.342 4.342 24 S 0.445 5.555 25 H 0.233 0.767 26 H 0.103 0.897 27 H -0.157 1.157 28 H -0.162 1.162 29 H 0.177 0.823 30 H 0.234 0.766 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.826 4.705 -0.539 5.514 hybrid contribution -0.924 -0.367 0.298 1.038 sum 1.902 4.338 -0.241 4.743 Atomic orbital electron populations 1.86523 1.16723 1.81858 1.49818 1.23998 0.85980 1.09685 0.95131 0.94668 0.81886 0.78120 0.88361 1.23430 1.09095 0.97280 1.01485 1.21039 0.97343 0.94359 0.95030 1.20194 1.05783 0.93871 0.97455 1.17560 0.78079 0.87019 0.80355 1.90833 1.42491 1.49471 1.57362 1.45509 1.57930 1.10874 1.21989 1.21796 0.96038 0.84270 0.95952 0.86602 1.23180 0.97136 1.03512 0.91620 1.25090 1.02089 1.02228 0.94304 0.87233 1.85542 1.61261 1.32710 1.06067 1.21750 1.01848 0.98287 0.97684 1.21158 0.99509 0.94858 1.00099 1.21101 0.97723 0.99590 0.93666 1.21245 1.00247 0.96680 0.96353 1.21152 0.96415 0.94915 0.99524 1.20812 0.99676 1.00376 0.91711 1.23784 0.96136 1.04118 0.93722 1.25799 1.05041 0.98432 1.04881 1.83213 1.50689 1.10129 1.11508 0.76652 0.89672 1.15712 1.16213 0.82344 0.76623 0.87307 0.89441 0.86076 0.85704 0.85636 0.85332 0.85444 0.90247 0.87403 0.81141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.10 12.86 -35.23 -0.45 -0.35 16 2 C -0.03 0.02 2.93 36.01 0.11 0.13 16 3 Si 0.67 -1.29 30.92 -169.99 -5.26 -6.55 16 4 C -0.20 -0.33 5.69 -36.18 -0.21 -0.53 16 5 C -0.05 -0.13 9.95 -39.02 -0.39 -0.52 16 6 C -0.15 -0.30 5.98 -104.63 -0.63 -0.93 16 7 C 0.58 1.64 7.79 -12.62 -0.10 1.54 16 8 O -0.53 -3.45 16.40 5.24 0.09 -3.36 16 9 N -0.71 0.38 5.23 -54.16 -0.28 0.10 16 10 C 0.13 -0.08 4.32 -67.12 -0.29 -0.37 16 11 H 0.12 0.10 7.46 -51.93 -0.39 -0.29 16 12 C -0.11 0.24 7.42 -25.92 -0.19 0.05 16 13 C -0.11 0.14 2.89 -25.92 -0.07 0.06 16 14 H 0.11 -0.22 6.85 -51.93 -0.36 -0.58 16 15 S -0.10 -0.11 21.72 -107.50 -2.33 -2.44 16 16 C -0.08 -0.17 6.11 -39.04 -0.24 -0.40 16 17 C -0.13 -0.17 9.32 -39.37 -0.37 -0.54 16 18 C -0.10 -0.09 10.04 -39.61 -0.40 -0.48 16 19 C -0.12 -0.09 10.04 -39.53 -0.40 -0.48 16 20 C -0.10 -0.09 10.04 -39.61 -0.40 -0.49 16 21 C -0.10 -0.18 9.79 -39.37 -0.39 -0.56 16 22 C -0.14 0.09 7.38 -25.92 -0.19 -0.10 16 23 C -0.20 0.06 10.38 29.93 0.31 0.37 16 24 S 0.18 0.10 20.20 -107.50 -2.17 -2.07 16 25 H 0.39 -2.08 8.74 45.56 0.40 -1.68 16 26 H 0.09 -0.20 7.96 -51.93 -0.41 -0.61 16 27 H -0.23 -0.20 7.11 56.52 0.40 0.21 16 28 H -0.24 -0.02 7.11 56.52 0.40 0.38 16 29 H 0.16 0.48 8.06 -52.49 -0.42 0.06 16 30 H 0.40 -1.23 7.20 -40.82 -0.29 -1.53 16 31 H 0.11 -0.24 8.10 -51.93 -0.42 -0.66 16 32 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 33 H 0.12 -0.02 5.64 -52.49 -0.30 -0.31 16 34 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 35 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 36 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 37 H 0.13 0.09 8.06 -52.49 -0.42 -0.33 16 38 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 39 H 0.11 -0.04 8.10 -51.93 -0.42 -0.46 16 40 H 0.17 -0.61 7.01 -52.48 -0.37 -0.98 16 LS Contribution 365.25 15.07 5.50 5.50 Total: 0.00 -8.54 365.25 -13.46 -22.00 By element: Atomic # 1 Polarization: -4.85 SS G_CDS: -4.71 Total: -9.56 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.83 Total: -3.26 kcal Atomic # 7 Polarization: 0.38 SS G_CDS: -0.28 Total: 0.10 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.37 Total: -3.72 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: -5.26 Total: -6.55 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -4.51 Total: -4.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -8.54 -13.46 -22.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_6894386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.724 kcal (2) G-P(sol) polarization free energy of solvation -8.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds