Wall clock time and date at job start Sat Mar 6 2021 19:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 5 5 C 1.32774 * 124.71107 * 64.99989 * 4 2 1 6 6 C 1.44424 * 113.07942 * 179.97438 * 5 4 2 7 7 C 1.47193 * 123.45725 * 180.02562 * 6 5 4 8 8 O 1.21637 * 120.00032 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99905 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00157 * 180.02562 * 9 7 6 11 11 H 1.09005 * 112.84507 * 23.80184 * 10 9 7 12 12 C 1.53778 * 113.61423 * 154.99708 * 10 9 7 13 13 C 1.53782 * 87.07884 * 89.12046 * 12 10 9 14 14 H 1.09004 * 113.61240 * 270.88191 * 13 12 10 15 15 S 1.81401 * 113.61431 * 139.98296 * 13 12 10 16 16 C 1.76203 * 102.99684 * 174.99943 * 15 13 12 17 17 C 1.38972 * 120.08142 * 359.72228 * 16 15 13 18 18 C 1.38085 * 119.91679 * 179.72724 * 17 16 15 19 19 C 1.38304 * 120.08116 * 0.52571 * 18 17 16 20 20 C 1.38307 * 120.15931 * 359.76913 * 19 18 17 21 21 C 1.38085 * 120.07920 * 359.95705 * 20 19 18 22 22 C 1.53780 * 87.08413 * 25.42984 * 13 12 10 23 23 C 1.36013 * 113.08157 * 0.02562 * 6 5 4 24 24 S 1.70444 * 110.81597 * 359.72688 * 23 6 5 25 25 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 26 26 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 27 27 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 28 28 H 1.48497 * 109.99780 * 181.31712 * 3 2 1 29 29 H 1.07994 * 123.45699 * 359.97438 * 5 4 2 30 30 H 0.97006 * 120.00347 * 359.97438 * 9 7 6 31 31 H 1.09003 * 113.61325 * 203.66358 * 12 10 9 32 32 H 1.08994 * 113.61772 * 334.48868 * 12 10 9 33 33 H 1.07996 * 120.04092 * 0.02562 * 17 16 15 34 34 H 1.07998 * 119.95999 * 180.28031 * 18 17 16 35 35 H 1.07997 * 119.91980 * 179.74782 * 19 18 17 36 36 H 1.07998 * 119.95903 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.03711 * 179.97438 * 21 20 19 38 38 H 1.08992 * 113.61608 * 220.02078 * 22 13 12 39 39 H 1.09003 * 113.61555 * 89.11339 * 22 13 12 40 40 H 1.08005 * 124.58680 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7485 -2.0003 1.4864 6 6 2.3365 -2.4182 2.7376 7 6 2.2704 -3.7985 3.2444 8 8 1.6982 -4.6565 2.5993 9 7 2.8440 -4.1118 4.4231 10 6 2.7788 -5.4858 4.9272 11 1 2.6312 -6.2205 4.1356 12 6 3.9207 -5.8423 5.8935 13 6 3.0173 -5.3272 7.0264 14 1 3.1311 -4.2615 7.2253 15 16 3.0908 -6.3380 8.5309 16 6 2.0925 -5.4325 9.6659 17 6 1.4952 -4.2412 9.2715 18 6 0.7089 -3.5372 10.1619 19 6 0.5242 -4.0107 11.4482 20 6 1.1220 -5.1927 11.8460 21 6 1.9051 -5.9050 10.9593 22 6 1.8218 -5.6602 6.1183 23 6 2.9575 -1.4052 3.3995 24 16 2.8455 0.0510 2.5208 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5139 -0.8900 27 1 1.5614 2.4679 1.2084 28 1 3.5345 1.7703 -0.0321 29 1 1.2148 -2.6684 0.8267 30 1 3.3007 -3.4277 4.9374 31 1 4.1264 -6.9112 5.9509 32 1 4.8205 -5.2454 5.7452 33 1 1.6419 -3.8690 8.2683 34 1 0.2407 -2.6137 9.8547 35 1 -0.0880 -3.4559 12.1437 36 1 0.9760 -5.5592 12.8514 37 1 2.3719 -6.8277 11.2708 38 1 1.0268 -4.9153 6.1524 39 1 1.4537 -6.6793 6.2371 40 1 3.4576 -1.5104 4.3510 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_6894386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:48:58 Heat of formation + Delta-G solvation = 31.031586 kcal Electronic energy + Delta-G solvation = -24238.237402 eV Core-core repulsion = 20624.564393 eV Total energy + Delta-G solvation = -3613.673010 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.064 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53278 -39.91538 -39.67444 -38.56722 -37.20063 -34.60453 -32.14095 -31.94762 -31.83585 -27.21577 -27.01439 -26.91794 -25.29835 -23.73554 -23.46257 -22.20989 -20.82949 -20.65961 -18.79031 -18.73443 -18.47740 -18.33075 -17.66555 -16.91178 -16.57974 -16.31339 -16.11539 -15.97457 -15.82111 -15.55529 -14.92622 -14.87496 -14.48780 -14.35472 -14.24215 -14.03312 -13.95370 -13.86471 -13.68966 -13.62870 -13.24637 -12.69696 -12.42724 -12.28077 -12.14452 -12.10678 -11.93996 -11.72663 -11.23587 -11.10788 -10.78456 -10.47646 -10.32463 -10.06132 -10.01690 -9.64373 -8.43858 -5.19963 -0.48709 0.18172 0.25875 0.33721 0.49180 0.60053 0.70737 1.18478 1.33404 1.59333 1.86053 1.90773 2.12023 2.69442 3.19363 3.22391 3.30938 3.58773 3.67730 3.71987 3.76629 3.87163 3.92339 3.95875 4.14944 4.17394 4.37659 4.40530 4.43203 4.49175 4.57766 4.58808 4.60583 4.68973 4.72865 4.80879 4.85553 4.91766 4.98752 5.04322 5.22827 5.37042 5.38336 5.50458 5.90515 6.30651 6.83225 7.00497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.050 4.050 3 Si 0.758 3.242 4 C -0.210 4.210 5 C -0.070 4.070 6 C -0.177 4.177 7 C 0.583 3.417 8 O -0.574 6.574 9 N -0.694 5.694 10 C 0.124 3.876 11 H 0.099 0.901 12 C -0.102 4.102 13 C -0.096 4.096 14 H 0.123 0.877 15 S -0.126 6.126 16 C -0.098 4.098 17 C -0.142 4.142 18 C -0.110 4.110 19 C -0.133 4.133 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.135 4.135 23 C -0.183 4.183 24 S 0.185 5.815 25 H 0.406 0.594 26 H 0.101 0.899 27 H -0.271 1.271 28 H -0.263 1.263 29 H 0.144 0.856 30 H 0.414 0.586 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 6.019 -0.872 6.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.161 4.161 3 Si 0.660 3.340 4 C -0.326 4.326 5 C -0.099 4.099 6 C -0.195 4.195 7 C 0.370 3.630 8 O -0.454 6.454 9 N -0.346 5.346 10 C 0.017 3.983 11 H 0.117 0.883 12 C -0.142 4.142 13 C -0.225 4.225 14 H 0.141 0.859 15 S 0.121 5.879 16 C -0.210 4.210 17 C -0.165 4.165 18 C -0.130 4.130 19 C -0.153 4.153 20 C -0.127 4.127 21 C -0.144 4.144 22 C -0.176 4.176 23 C -0.321 4.321 24 S 0.451 5.549 25 H 0.258 0.742 26 H 0.118 0.882 27 H -0.196 1.196 28 H -0.189 1.189 29 H 0.161 0.839 30 H 0.252 0.748 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.150 0.850 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.506 6.079 -0.013 7.018 hybrid contribution -1.158 -0.764 0.167 1.397 sum 2.348 5.315 0.155 5.813 Atomic orbital electron populations 1.86469 1.16991 1.82538 1.51460 1.24309 0.86010 1.10974 0.94844 0.93589 0.79006 0.75270 0.86182 1.23796 1.09021 0.97250 1.02572 1.21072 0.98297 0.94829 0.95729 1.20137 1.07466 0.93996 0.97897 1.17747 0.77571 0.86957 0.80718 1.90804 1.44908 1.50776 1.58932 1.45358 1.56835 1.11358 1.21001 1.21768 0.97135 0.83851 0.95557 0.88317 1.23144 0.97069 1.03987 0.89989 1.25118 1.01803 1.02546 0.93008 0.85919 1.85582 1.61303 1.33805 1.07229 1.21913 1.02341 0.98778 0.97982 1.21362 0.99595 0.94765 1.00805 1.21401 0.97581 1.00216 0.93761 1.21549 1.00265 0.96740 0.96773 1.21424 0.96072 0.95013 1.00232 1.21017 1.00342 1.00876 0.92122 1.23741 0.96245 1.03729 0.93883 1.26134 1.03288 0.97173 1.05492 1.83228 1.50190 1.10302 1.11209 0.74244 0.88155 1.19635 1.18875 0.83868 0.74823 0.87090 0.87735 0.84987 0.84033 0.83865 0.83702 0.85224 0.90839 0.87906 0.77681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.06 12.86 -148.98 -1.92 -1.86 16 2 C -0.05 0.06 2.93 71.24 0.21 0.26 16 3 Si 0.76 -3.17 30.92 68.60 2.12 -1.05 16 4 C -0.21 -0.83 5.69 24.51 0.14 -0.69 16 5 C -0.07 -0.49 9.95 22.67 0.23 -0.26 16 6 C -0.18 -0.79 5.98 -19.87 -0.12 -0.91 16 7 C 0.58 3.85 7.79 86.60 0.67 4.53 16 8 O -0.57 -8.88 16.40 -4.15 -0.07 -8.95 16 9 N -0.69 0.89 5.23 -443.51 -2.32 -1.43 16 10 C 0.12 -0.12 4.32 45.52 0.20 0.07 16 11 H 0.10 0.31 7.46 -2.38 -0.02 0.30 16 12 C -0.10 0.50 7.42 31.12 0.23 0.73 16 13 C -0.10 0.29 2.89 31.12 0.09 0.38 16 14 H 0.12 -0.68 6.85 -2.38 -0.02 -0.69 16 15 S -0.13 -0.29 21.72 -56.49 -1.23 -1.52 16 16 C -0.10 -0.42 6.11 22.62 0.14 -0.28 16 17 C -0.14 -0.32 9.32 22.41 0.21 -0.11 16 18 C -0.11 -0.12 10.04 22.25 0.22 0.10 16 19 C -0.13 -0.11 10.04 22.30 0.22 0.12 16 20 C -0.11 -0.18 10.04 22.25 0.22 0.04 16 21 C -0.12 -0.48 9.79 22.41 0.22 -0.26 16 22 C -0.14 0.13 7.38 31.12 0.23 0.35 16 23 C -0.18 0.28 10.38 67.30 0.70 0.98 16 24 S 0.18 0.13 20.20 -56.49 -1.14 -1.01 16 25 H 0.41 -4.47 8.74 -74.06 -0.65 -5.12 16 26 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 27 H -0.27 -0.51 7.11 99.48 0.71 0.20 16 28 H -0.26 0.04 7.11 99.48 0.71 0.75 16 29 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.41 -3.22 7.20 -92.70 -0.67 -3.88 16 31 H 0.11 -0.53 8.10 -2.39 -0.02 -0.55 16 32 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H 0.13 -0.13 5.64 -2.91 -0.02 -0.15 16 34 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 35 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 36 H 0.15 -0.38 8.06 -2.91 -0.02 -0.41 16 37 H 0.13 0.31 8.06 -2.91 -0.02 0.29 16 38 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.10 0.03 8.10 -2.39 -0.02 0.01 16 40 H 0.21 -2.01 7.01 -2.91 -0.02 -2.03 16 Total: 0.00 -22.11 365.25 -0.92 -23.04 By element: Atomic # 1 Polarization: -12.10 SS G_CDS: -0.19 Total: -12.28 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 3.81 Total: 5.06 kcal Atomic # 7 Polarization: 0.89 SS G_CDS: -2.32 Total: -1.43 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.98 Total: -10.81 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: 2.12 Total: -1.05 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.37 Total: -2.53 kcal Total: -22.11 -0.92 -23.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_6894386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.068 kcal (2) G-P(sol) polarization free energy of solvation -22.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds