Wall clock time and date at job start Sat Mar 6 2021 19:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37935 * 120.07720 * 2 1 4 4 C 1.38383 * 120.14757 * 180.27517 * 3 2 1 5 5 C 1.50707 * 119.85476 * 179.76935 * 4 3 2 6 6 C 1.38339 * 120.29295 * 359.74905 * 4 3 2 7 7 C 1.50696 * 119.92878 * 179.97438 * 6 4 3 8 8 O 1.42895 * 109.47356 * 285.02166 * 7 6 4 9 9 Si 1.86298 * 109.47005 * 165.01992 * 7 6 4 10 10 C 1.37979 * 120.14214 * 0.02562 * 6 4 3 11 11 C 1.39556 * 119.85376 * 359.97438 * 10 6 4 12 12 C 1.47842 * 120.14423 * 179.97438 * 11 10 6 13 13 O 1.21555 * 119.99874 * 173.76007 * 12 11 10 14 14 N 1.34781 * 120.00279 * 353.75253 * 12 11 10 15 15 C 1.46498 * 120.00324 * 179.97438 * 14 12 11 16 16 H 1.08997 * 112.90352 * 23.75708 * 15 14 12 17 17 C 1.53779 * 113.61320 * 155.00245 * 15 14 12 18 18 C 1.53788 * 87.07913 * 89.12002 * 17 15 14 19 19 H 1.09000 * 113.61351 * 270.88541 * 18 17 15 20 20 S 1.81403 * 113.61300 * 140.06394 * 18 17 15 21 21 C 1.76196 * 102.99573 * 175.00048 * 20 18 17 22 22 C 1.38967 * 120.08454 * 359.72981 * 21 20 18 23 23 C 1.38086 * 119.91973 * 179.72178 * 22 21 20 24 24 C 1.38295 * 120.07973 * 0.57160 * 23 22 21 25 25 C 1.38307 * 120.16255 * 359.67816 * 24 23 22 26 26 C 1.38082 * 120.08087 * 0.04750 * 25 24 23 27 27 C 1.53777 * 113.61876 * 252.50595 * 15 14 12 28 28 H 1.08993 * 109.47074 * 263.62117 * 1 2 3 29 29 H 1.09003 * 109.46650 * 23.62164 * 1 2 3 30 30 H 1.09000 * 109.47118 * 143.61874 * 1 2 3 31 31 H 1.08006 * 119.92911 * 0.02598 * 3 2 1 32 32 H 1.08997 * 109.46685 * 269.98272 * 5 4 3 33 33 H 1.08996 * 109.46984 * 29.97813 * 5 4 3 34 34 H 1.08999 * 109.46583 * 149.97897 * 5 4 3 35 35 H 1.09005 * 109.47270 * 45.02215 * 7 6 4 36 36 H 0.96709 * 114.00107 * 59.99657 * 8 7 6 37 37 H 1.48498 * 110.00007 * 299.99814 * 9 7 6 38 38 H 1.48501 * 110.00189 * 61.32123 * 9 7 6 39 39 H 1.07995 * 120.07128 * 179.97438 * 10 6 4 40 40 H 0.97001 * 119.99359 * 0.02562 * 14 12 11 41 41 H 1.08997 * 113.61472 * 334.57506 * 17 15 14 42 42 H 1.09001 * 113.61536 * 203.66829 * 17 15 14 43 43 H 1.07998 * 120.04001 * 359.97438 * 22 21 20 44 44 H 1.07997 * 119.96057 * 180.27248 * 23 22 21 45 45 H 1.08008 * 119.92279 * 179.69949 * 24 23 22 46 46 H 1.08001 * 119.96203 * 180.02562 * 25 24 23 47 47 H 1.07997 * 120.04677 * 179.97438 * 26 25 24 48 48 H 1.09001 * 113.61782 * 156.33927 * 27 15 14 49 49 H 1.09004 * 113.69264 * 25.44066 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1936 0.0000 4 6 3.5821 1.1953 -0.0057 5 6 4.3307 2.5033 -0.0110 6 6 4.2814 0.0017 -0.0063 7 6 5.7883 0.0131 -0.0132 8 8 6.2561 0.3630 -1.3172 9 14 6.4242 -1.6779 0.4417 10 6 3.6021 -1.1993 -0.0016 11 6 2.2065 -1.2080 0.0042 12 6 1.4722 -2.4912 0.0086 13 8 0.2625 -2.4987 0.1281 14 7 2.1438 -3.6526 -0.1199 15 6 1.4162 -4.9241 -0.1150 16 1 0.3731 -4.8170 -0.4125 17 6 2.1525 -6.0580 -0.8477 18 6 2.8300 -6.3794 0.4949 19 1 3.7579 -5.8312 0.6580 20 16 2.9956 -8.1567 0.8182 21 6 3.9194 -8.2023 2.3178 22 6 4.3224 -7.0185 2.9240 23 6 5.0413 -7.0581 4.1023 24 6 5.3706 -8.2741 4.6729 25 6 4.9758 -9.4544 4.0697 26 6 4.2517 -9.4225 2.8943 27 6 1.6084 -5.7389 1.1749 28 1 -0.3633 -0.1142 1.0212 29 1 -0.3633 0.9416 -0.4118 30 1 -0.3633 -0.8274 -0.6096 31 1 1.6583 2.1290 0.0004 32 1 4.5071 2.8168 -1.0399 33 1 3.7407 3.2616 0.5037 34 1 5.2855 2.3774 0.4994 35 1 6.1494 0.7439 0.7106 36 1 5.9627 1.2334 -1.6200 37 1 5.9447 -2.0534 1.7960 38 1 5.9651 -2.6782 -0.5552 39 1 4.1491 -2.1304 -0.0025 40 1 3.1092 -3.6465 -0.2150 41 1 2.8446 -5.7063 -1.6128 42 1 1.4922 -6.8487 -1.2040 43 1 4.0700 -6.0687 2.4763 44 1 5.3510 -6.1385 4.5763 45 1 5.9372 -8.3022 5.5920 46 1 5.2343 -10.4022 4.5183 47 1 3.9441 -10.3445 2.4236 48 1 0.7994 -6.4424 1.3717 49 1 1.8611 -5.1308 2.0436 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12525224_9599494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:49:07 Heat of formation + Delta-G solvation = 13.043768 kcal Electronic energy + Delta-G solvation = -30672.557222 eV Core-core repulsion = 26657.876717 eV Total energy + Delta-G solvation = -4014.680504 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.90395 -40.73059 -39.86719 -39.25012 -37.63134 -34.92976 -34.41333 -33.19273 -32.06954 -31.91514 -29.47728 -28.77634 -27.05057 -26.62115 -25.56679 -23.96179 -23.72299 -23.52417 -22.75034 -21.19551 -20.67094 -19.08150 -18.74472 -18.39460 -17.77117 -17.25516 -16.81191 -16.57286 -16.54374 -16.25001 -16.14492 -15.87002 -15.75645 -15.30396 -15.03702 -14.91303 -14.83135 -14.59495 -14.45223 -14.27704 -14.02857 -13.92241 -13.78275 -13.71061 -13.60284 -13.25848 -12.99278 -12.87817 -12.78285 -12.66803 -12.29829 -12.27135 -12.14900 -12.00846 -11.74273 -11.40047 -11.20840 -11.12507 -10.77042 -10.68177 -10.26681 -10.01888 -9.97797 -9.71299 -8.38515 -4.97455 -0.35650 0.06580 0.22602 0.37713 0.49600 1.20023 1.33257 1.49226 1.67855 1.76861 1.88174 2.55981 2.73178 3.12169 3.13095 3.33314 3.39245 3.45264 3.54423 3.63578 3.65812 3.71293 3.86181 3.92913 3.94735 4.00786 4.13883 4.26214 4.30361 4.33045 4.37174 4.41426 4.43375 4.47905 4.50315 4.53705 4.58691 4.60202 4.72477 4.73851 4.76172 4.81589 4.85362 4.87861 4.96708 4.98889 5.17329 5.26304 5.29562 5.37878 5.39935 5.47736 5.53136 5.69456 5.90949 6.27112 6.39066 7.05557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.009 4.009 3 C -0.126 4.126 4 C -0.040 4.040 5 C -0.130 4.130 6 C -0.129 4.129 7 C -0.082 4.082 8 O -0.533 6.533 9 Si 0.741 3.259 10 C -0.078 4.078 11 C -0.143 4.143 12 C 0.564 3.436 13 O -0.520 6.520 14 N -0.714 5.714 15 C 0.126 3.874 16 H 0.117 0.883 17 C -0.116 4.116 18 C -0.110 4.110 19 H 0.108 0.892 20 S -0.101 6.101 21 C -0.083 4.083 22 C -0.133 4.133 23 C -0.101 4.101 24 C -0.124 4.124 25 C -0.100 4.100 26 C -0.102 4.102 27 C -0.136 4.136 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.363 0.637 37 H -0.247 1.247 38 H -0.252 1.252 39 H 0.121 0.879 40 H 0.397 0.603 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.128 0.872 48 H 0.109 0.891 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 2.844 0.747 4.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.010 4.010 3 C -0.144 4.144 4 C -0.040 4.040 5 C -0.186 4.186 6 C -0.129 4.129 7 C -0.191 4.191 8 O -0.338 6.338 9 Si 0.639 3.361 10 C -0.096 4.096 11 C -0.146 4.146 12 C 0.353 3.647 13 O -0.397 6.397 14 N -0.366 5.366 15 C 0.019 3.981 16 H 0.135 0.865 17 C -0.155 4.155 18 C -0.239 4.239 19 H 0.126 0.874 20 S 0.147 5.853 21 C -0.196 4.196 22 C -0.157 4.157 23 C -0.121 4.121 24 C -0.145 4.145 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.177 4.177 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.211 0.789 37 H -0.171 1.171 38 H -0.177 1.177 39 H 0.139 0.861 40 H 0.233 0.767 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.146 0.854 48 H 0.127 0.873 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.725 0.539 0.311 2.796 hybrid contribution -0.061 2.142 0.648 2.238 sum 2.665 2.680 0.960 3.899 Atomic orbital electron populations 1.21129 0.89422 1.03471 1.03951 1.20110 0.97163 0.91151 0.92611 1.21034 0.93238 0.97939 1.02221 1.20003 0.93768 0.94890 0.95354 1.21013 1.00637 0.93755 1.03225 1.20038 0.96214 0.92793 1.03868 1.25295 0.91158 1.14031 0.88600 1.86786 1.75463 1.40069 1.31500 0.92917 0.91749 0.72431 0.78974 1.21042 0.93267 0.97347 0.97940 1.19622 0.92902 0.93337 1.08784 1.18213 0.87107 0.83392 0.75974 1.90760 1.13424 1.86937 1.48570 1.45648 1.10606 1.05297 1.75056 1.21805 0.97981 0.81883 0.96444 0.86482 1.23190 0.99605 0.98024 0.94698 1.25094 1.01733 0.95302 1.01763 0.87384 1.85524 1.66584 1.08363 1.24878 1.21751 1.02206 0.96528 0.99086 1.21150 1.00833 0.96585 0.97132 1.21095 0.97531 0.98317 0.95115 1.21242 1.00448 0.92413 1.00366 1.21153 0.97201 0.98679 0.94936 1.20812 0.99321 0.96160 0.96234 1.23784 0.96984 0.99023 0.97921 0.90257 0.91952 0.88512 0.84668 0.90076 0.90467 0.90657 0.90381 0.78868 1.17142 1.17699 0.86146 0.76731 0.89428 0.87180 0.86223 0.85705 0.85598 0.85305 0.85425 0.87313 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.22 8.73 36.00 0.31 0.10 16 2 C -0.01 -0.02 5.91 -104.23 -0.62 -0.64 16 3 C -0.13 -0.06 9.31 -39.64 -0.37 -0.43 16 4 C -0.04 0.00 5.87 -104.53 -0.61 -0.61 16 5 C -0.13 0.37 8.73 36.01 0.31 0.68 16 6 C -0.13 -0.09 5.26 -104.68 -0.55 -0.64 16 7 C -0.08 0.06 2.09 36.00 0.08 0.14 16 8 O -0.53 0.08 12.65 -35.23 -0.45 -0.37 16 9 Si 0.74 -0.88 30.40 -169.99 -5.17 -6.05 16 10 C -0.08 -0.11 8.13 -39.18 -0.32 -0.43 16 11 C -0.14 -0.35 5.87 -104.97 -0.62 -0.96 16 12 C 0.56 1.64 7.70 -12.33 -0.09 1.55 16 13 O -0.52 -2.74 12.95 5.32 0.07 -2.67 16 14 N -0.71 -0.35 5.21 -53.96 -0.28 -0.63 16 15 C 0.13 -0.03 4.32 -67.12 -0.29 -0.32 16 16 H 0.12 0.09 7.46 -51.93 -0.39 -0.30 16 17 C -0.12 0.17 7.42 -25.92 -0.19 -0.02 16 18 C -0.11 0.07 2.89 -25.91 -0.07 -0.01 16 19 H 0.11 -0.10 6.85 -51.93 -0.36 -0.46 16 20 S -0.10 -0.13 21.72 -107.50 -2.34 -2.47 16 21 C -0.08 -0.18 6.11 -39.03 -0.24 -0.42 16 22 C -0.13 -0.21 9.32 -39.37 -0.37 -0.57 16 23 C -0.10 -0.09 10.04 -39.62 -0.40 -0.49 16 24 C -0.12 -0.08 10.04 -39.54 -0.40 -0.48 16 25 C -0.10 -0.08 10.04 -39.61 -0.40 -0.48 16 26 C -0.10 -0.18 9.79 -39.36 -0.39 -0.57 16 27 C -0.14 0.05 7.38 -25.92 -0.19 -0.14 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.01 8.04 -51.93 -0.42 -0.41 16 30 H 0.10 0.33 5.86 -51.93 -0.30 0.02 16 31 H 0.14 -0.19 8.06 -52.48 -0.42 -0.62 16 32 H 0.08 -0.32 7.77 -51.93 -0.40 -0.72 16 33 H 0.08 -0.25 8.08 -51.93 -0.42 -0.67 16 34 H 0.07 -0.26 6.22 -51.93 -0.32 -0.58 16 35 H 0.08 -0.19 6.48 -51.93 -0.34 -0.52 16 36 H 0.36 -1.00 7.71 45.56 0.35 -0.65 16 37 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 38 H -0.25 -0.15 6.81 56.52 0.38 0.24 16 39 H 0.12 0.04 3.32 -52.49 -0.17 -0.13 16 40 H 0.40 -0.36 6.77 -40.82 -0.28 -0.64 16 41 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 42 H 0.11 -0.20 8.10 -51.93 -0.42 -0.62 16 43 H 0.12 0.05 5.64 -52.49 -0.30 -0.25 16 44 H 0.12 -0.11 8.06 -52.49 -0.42 -0.54 16 45 H 0.13 -0.16 8.06 -52.48 -0.42 -0.59 16 46 H 0.13 -0.15 8.06 -52.49 -0.42 -0.58 16 47 H 0.13 0.09 8.06 -52.49 -0.42 -0.33 16 48 H 0.11 -0.04 8.10 -51.93 -0.42 -0.46 16 49 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 LS Contribution 402.95 15.07 6.07 6.07 Total: 0.00 -6.28 402.95 -14.28 -20.55 By element: Atomic # 1 Polarization: -2.91 SS G_CDS: -6.78 Total: -9.69 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -5.41 Total: -4.75 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -0.28 Total: -0.63 kcal Atomic # 8 Polarization: -2.66 SS G_CDS: -0.38 Total: -3.04 kcal Atomic # 14 Polarization: -0.88 SS G_CDS: -5.17 Total: -6.05 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.34 Total: -2.47 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -6.28 -14.28 -20.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_9599494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.598 kcal (2) G-P(sol) polarization free energy of solvation -6.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds