Wall clock time and date at job start Sat Mar 6 2021 19:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37935 * 120.07720 * 2 1 4 4 C 1.38383 * 120.14757 * 180.27517 * 3 2 1 5 5 C 1.50707 * 119.85476 * 179.76935 * 4 3 2 6 6 C 1.38339 * 120.29295 * 359.74905 * 4 3 2 7 7 C 1.50696 * 119.92878 * 179.97438 * 6 4 3 8 8 O 1.42895 * 109.47356 * 285.02166 * 7 6 4 9 9 Si 1.86298 * 109.47005 * 165.01992 * 7 6 4 10 10 C 1.37979 * 120.14214 * 0.02562 * 6 4 3 11 11 C 1.39556 * 119.85376 * 359.97438 * 10 6 4 12 12 C 1.47842 * 120.14423 * 179.97438 * 11 10 6 13 13 O 1.21555 * 119.99874 * 173.76007 * 12 11 10 14 14 N 1.34781 * 120.00279 * 353.75253 * 12 11 10 15 15 C 1.46498 * 120.00324 * 179.97438 * 14 12 11 16 16 H 1.08997 * 112.90352 * 23.75708 * 15 14 12 17 17 C 1.53779 * 113.61320 * 155.00245 * 15 14 12 18 18 C 1.53788 * 87.07913 * 89.12002 * 17 15 14 19 19 H 1.09000 * 113.61351 * 270.88541 * 18 17 15 20 20 S 1.81403 * 113.61300 * 140.06394 * 18 17 15 21 21 C 1.76196 * 102.99573 * 175.00048 * 20 18 17 22 22 C 1.38967 * 120.08454 * 359.72981 * 21 20 18 23 23 C 1.38086 * 119.91973 * 179.72178 * 22 21 20 24 24 C 1.38295 * 120.07973 * 0.57160 * 23 22 21 25 25 C 1.38307 * 120.16255 * 359.67816 * 24 23 22 26 26 C 1.38082 * 120.08087 * 0.04750 * 25 24 23 27 27 C 1.53777 * 113.61876 * 252.50595 * 15 14 12 28 28 H 1.08993 * 109.47074 * 263.62117 * 1 2 3 29 29 H 1.09003 * 109.46650 * 23.62164 * 1 2 3 30 30 H 1.09000 * 109.47118 * 143.61874 * 1 2 3 31 31 H 1.08006 * 119.92911 * 0.02598 * 3 2 1 32 32 H 1.08997 * 109.46685 * 269.98272 * 5 4 3 33 33 H 1.08996 * 109.46984 * 29.97813 * 5 4 3 34 34 H 1.08999 * 109.46583 * 149.97897 * 5 4 3 35 35 H 1.09005 * 109.47270 * 45.02215 * 7 6 4 36 36 H 0.96709 * 114.00107 * 59.99657 * 8 7 6 37 37 H 1.48498 * 110.00007 * 299.99814 * 9 7 6 38 38 H 1.48501 * 110.00189 * 61.32123 * 9 7 6 39 39 H 1.07995 * 120.07128 * 179.97438 * 10 6 4 40 40 H 0.97001 * 119.99359 * 0.02562 * 14 12 11 41 41 H 1.08997 * 113.61472 * 334.57506 * 17 15 14 42 42 H 1.09001 * 113.61536 * 203.66829 * 17 15 14 43 43 H 1.07998 * 120.04001 * 359.97438 * 22 21 20 44 44 H 1.07997 * 119.96057 * 180.27248 * 23 22 21 45 45 H 1.08008 * 119.92279 * 179.69949 * 24 23 22 46 46 H 1.08001 * 119.96203 * 180.02562 * 25 24 23 47 47 H 1.07997 * 120.04677 * 179.97438 * 26 25 24 48 48 H 1.09001 * 113.61782 * 156.33927 * 27 15 14 49 49 H 1.09004 * 113.69264 * 25.44066 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1936 0.0000 4 6 3.5821 1.1953 -0.0057 5 6 4.3307 2.5033 -0.0110 6 6 4.2814 0.0017 -0.0063 7 6 5.7883 0.0131 -0.0132 8 8 6.2561 0.3630 -1.3172 9 14 6.4242 -1.6779 0.4417 10 6 3.6021 -1.1993 -0.0016 11 6 2.2065 -1.2080 0.0042 12 6 1.4722 -2.4912 0.0086 13 8 0.2625 -2.4987 0.1281 14 7 2.1438 -3.6526 -0.1199 15 6 1.4162 -4.9241 -0.1150 16 1 0.3731 -4.8170 -0.4125 17 6 2.1525 -6.0580 -0.8477 18 6 2.8300 -6.3794 0.4949 19 1 3.7579 -5.8312 0.6580 20 16 2.9956 -8.1567 0.8182 21 6 3.9194 -8.2023 2.3178 22 6 4.3224 -7.0185 2.9240 23 6 5.0413 -7.0581 4.1023 24 6 5.3706 -8.2741 4.6729 25 6 4.9758 -9.4544 4.0697 26 6 4.2517 -9.4225 2.8943 27 6 1.6084 -5.7389 1.1749 28 1 -0.3633 -0.1142 1.0212 29 1 -0.3633 0.9416 -0.4118 30 1 -0.3633 -0.8274 -0.6096 31 1 1.6583 2.1290 0.0004 32 1 4.5071 2.8168 -1.0399 33 1 3.7407 3.2616 0.5037 34 1 5.2855 2.3774 0.4994 35 1 6.1494 0.7439 0.7106 36 1 5.9627 1.2334 -1.6200 37 1 5.9447 -2.0534 1.7960 38 1 5.9651 -2.6782 -0.5552 39 1 4.1491 -2.1304 -0.0025 40 1 3.1092 -3.6465 -0.2150 41 1 2.8446 -5.7063 -1.6128 42 1 1.4922 -6.8487 -1.2040 43 1 4.0700 -6.0687 2.4763 44 1 5.3510 -6.1385 4.5763 45 1 5.9372 -8.3022 5.5920 46 1 5.2343 -10.4022 4.5183 47 1 3.9441 -10.3445 2.4236 48 1 0.7994 -6.4424 1.3717 49 1 1.8611 -5.1308 2.0436 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12525224_9599494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:49:06 Heat of formation + Delta-G solvation = 20.956578 kcal Electronic energy + Delta-G solvation = -30672.214097 eV Core-core repulsion = 26657.876717 eV Total energy + Delta-G solvation = -4014.337379 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99839 -40.75092 -39.90900 -39.34960 -37.61235 -35.05044 -34.41218 -33.21430 -32.11305 -31.96125 -29.50755 -28.71438 -27.03884 -26.63869 -25.58796 -23.96652 -23.76911 -23.56984 -22.81926 -21.27518 -20.70403 -19.13587 -18.78643 -18.37150 -17.81053 -17.28448 -16.85905 -16.60605 -16.54766 -16.31095 -16.28055 -15.90830 -15.77283 -15.28047 -15.03300 -14.93786 -14.89557 -14.59734 -14.48216 -14.27337 -14.07076 -13.88774 -13.81518 -13.71622 -13.55094 -13.24685 -13.03327 -12.88768 -12.75113 -12.64833 -12.31828 -12.29450 -12.18215 -12.01317 -11.78197 -11.36883 -11.20133 -11.14862 -10.85748 -10.79517 -10.39188 -10.04400 -10.04035 -9.75931 -8.47820 -4.89062 -0.42741 0.01749 0.15775 0.31305 0.44163 1.27397 1.28284 1.51399 1.59988 1.79237 1.84195 2.48211 2.67247 3.11603 3.13436 3.31163 3.37246 3.44909 3.53392 3.64590 3.68183 3.81074 3.83537 3.92013 3.98239 4.05224 4.15626 4.28773 4.31646 4.41168 4.41932 4.45775 4.46317 4.50937 4.51704 4.57403 4.59344 4.68197 4.70070 4.71924 4.72932 4.76129 4.80740 4.93872 4.96171 5.02623 5.16665 5.20506 5.30612 5.33345 5.36401 5.37665 5.48350 5.68222 5.88536 6.16562 6.61036 6.89747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.130 4.130 4 C -0.037 4.037 5 C -0.130 4.130 6 C -0.138 4.138 7 C -0.085 4.085 8 O -0.544 6.544 9 Si 0.786 3.214 10 C -0.087 4.087 11 C -0.162 4.162 12 C 0.560 3.440 13 O -0.552 6.552 14 N -0.706 5.706 15 C 0.124 3.876 16 H 0.107 0.893 17 C -0.105 4.105 18 C -0.101 4.101 19 H 0.112 0.888 20 S -0.119 6.119 21 C -0.099 4.099 22 C -0.145 4.145 23 C -0.110 4.110 24 C -0.130 4.130 25 C -0.106 4.106 26 C -0.118 4.118 27 C -0.132 4.132 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.376 0.624 37 H -0.267 1.267 38 H -0.280 1.280 39 H 0.125 0.875 40 H 0.404 0.596 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.141 0.859 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.132 0.868 48 H 0.109 0.891 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 4.115 0.931 6.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.148 4.148 4 C -0.037 4.037 5 C -0.186 4.186 6 C -0.139 4.139 7 C -0.193 4.193 8 O -0.351 6.351 9 Si 0.688 3.312 10 C -0.106 4.106 11 C -0.165 4.165 12 C 0.349 3.651 13 O -0.431 6.431 14 N -0.357 5.357 15 C 0.017 3.983 16 H 0.125 0.875 17 C -0.144 4.144 18 C -0.230 4.230 19 H 0.130 0.870 20 S 0.128 5.872 21 C -0.211 4.211 22 C -0.169 4.169 23 C -0.129 4.129 24 C -0.150 4.150 25 C -0.125 4.125 26 C -0.142 4.142 27 C -0.173 4.173 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.173 0.827 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.225 0.775 37 H -0.193 1.193 38 H -0.207 1.207 39 H 0.142 0.858 40 H 0.241 0.759 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.143 0.857 44 H 0.159 0.841 45 H 0.164 0.836 46 H 0.166 0.834 47 H 0.149 0.851 48 H 0.127 0.873 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.228 1.810 0.492 4.625 hybrid contribution -0.505 1.746 0.603 1.915 sum 3.722 3.556 1.095 5.263 Atomic orbital electron populations 1.21026 0.89696 1.03506 1.03148 1.20281 0.97256 0.91809 0.93431 1.21297 0.93785 0.98031 1.01658 1.20351 0.93705 0.95914 0.93753 1.21108 1.00796 0.92241 1.04458 1.20323 0.97183 0.92780 1.03600 1.25352 0.90082 1.14850 0.89064 1.86748 1.75534 1.41163 1.31702 0.92427 0.90856 0.71299 0.76582 1.21176 0.92983 0.98158 0.98241 1.19688 0.93436 0.93237 1.10138 1.18435 0.86857 0.84176 0.75587 1.90739 1.14645 1.87427 1.50302 1.45601 1.10936 1.05035 1.74117 1.21805 0.97626 0.81875 0.96988 0.87548 1.23169 0.99470 0.97362 0.94441 1.25092 1.01753 0.94025 1.02116 0.86953 1.85508 1.66720 1.09976 1.24997 1.21910 1.02733 0.97003 0.99465 1.21318 1.01205 0.96703 0.97630 1.21387 0.97261 0.99317 0.94970 1.21555 1.00280 0.92188 1.01006 1.21445 0.96707 0.99760 0.94613 1.21024 0.99920 0.96300 0.96908 1.23735 0.97181 0.98815 0.97537 0.91078 0.90230 0.90507 0.82748 0.88524 0.89658 0.89653 0.88168 0.77479 1.19305 1.20709 0.85809 0.75900 0.88493 0.86492 0.85700 0.84098 0.83603 0.83445 0.85059 0.87313 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 8.73 71.24 0.62 0.03 16 2 C -0.03 -0.14 5.91 -19.61 -0.12 -0.25 16 3 C -0.13 -0.08 9.31 22.23 0.21 0.13 16 4 C -0.04 0.04 5.87 -19.80 -0.12 -0.07 16 5 C -0.13 1.02 8.73 71.24 0.62 1.64 16 6 C -0.14 -0.13 5.26 -19.90 -0.10 -0.24 16 7 C -0.08 0.22 2.09 71.23 0.15 0.37 16 8 O -0.54 0.90 12.65 -148.98 -1.89 -0.99 16 9 Si 0.79 -1.91 30.40 68.60 2.09 0.18 16 10 C -0.09 -0.32 8.13 22.53 0.18 -0.14 16 11 C -0.16 -1.02 5.87 -20.09 -0.12 -1.14 16 12 C 0.56 4.43 7.70 86.78 0.67 5.10 16 13 O -0.55 -7.28 12.95 -3.89 -0.05 -7.33 16 14 N -0.71 -1.82 5.21 -442.92 -2.31 -4.13 16 15 C 0.12 0.13 4.32 45.52 0.20 0.32 16 16 H 0.11 0.38 7.46 -2.39 -0.02 0.37 16 17 C -0.10 0.24 7.42 31.12 0.23 0.47 16 18 C -0.10 0.03 2.89 31.12 0.09 0.12 16 19 H 0.11 -0.13 6.85 -2.39 -0.02 -0.14 16 20 S -0.12 -0.43 21.72 -56.49 -1.23 -1.66 16 21 C -0.10 -0.52 6.11 22.62 0.14 -0.38 16 22 C -0.14 -0.56 9.32 22.41 0.21 -0.35 16 23 C -0.11 -0.21 10.04 22.25 0.22 0.01 16 24 C -0.13 -0.12 10.04 22.30 0.22 0.10 16 25 C -0.11 -0.18 10.04 22.25 0.22 0.05 16 26 C -0.12 -0.51 9.79 22.41 0.22 -0.29 16 27 C -0.13 -0.09 7.38 31.12 0.23 0.14 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.08 0.05 8.04 -2.39 -0.02 0.04 16 30 H 0.08 0.71 5.86 -2.39 -0.01 0.70 16 31 H 0.15 -0.62 8.06 -2.91 -0.02 -0.65 16 32 H 0.10 -1.01 7.77 -2.39 -0.02 -1.03 16 33 H 0.08 -0.76 8.08 -2.39 -0.02 -0.78 16 34 H 0.08 -0.81 6.22 -2.39 -0.01 -0.82 16 35 H 0.10 -0.70 6.48 -2.38 -0.02 -0.71 16 36 H 0.38 -2.74 7.71 -74.05 -0.57 -3.31 16 37 H -0.27 -0.20 7.11 99.48 0.71 0.51 16 38 H -0.28 -0.58 6.81 99.48 0.68 0.10 16 39 H 0.12 0.22 3.32 -2.91 -0.01 0.21 16 40 H 0.40 -0.20 6.77 -92.71 -0.63 -0.83 16 41 H 0.10 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.12 -0.38 8.10 -2.39 -0.02 -0.40 16 43 H 0.13 0.21 5.64 -2.91 -0.02 0.20 16 44 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 45 H 0.15 -0.54 8.06 -2.91 -0.02 -0.56 16 46 H 0.15 -0.44 8.06 -2.91 -0.02 -0.46 16 47 H 0.13 0.33 8.06 -2.91 -0.02 0.31 16 48 H 0.11 0.08 8.10 -2.39 -0.02 0.06 16 49 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 Total: 0.00 -16.07 402.95 0.40 -15.67 By element: Atomic # 1 Polarization: -7.16 SS G_CDS: -0.19 Total: -7.35 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 3.98 Total: 5.61 kcal Atomic # 7 Polarization: -1.82 SS G_CDS: -2.31 Total: -4.13 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -1.94 Total: -8.32 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: 2.09 Total: 0.18 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -1.23 Total: -1.66 kcal Total: -16.07 0.40 -15.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12525224_9599494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.624 kcal (2) G-P(sol) polarization free energy of solvation -16.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds