Wall clock time and date at job start Sat Mar 6 2021 17:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42902 * 109.47041 * 2 1 4 4 C 1.35902 * 116.99576 * 84.92244 * 3 2 1 5 5 C 1.38735 * 120.04980 * 174.25499 * 4 3 2 6 6 C 1.38145 * 119.93811 * 179.70227 * 5 4 3 7 7 C 1.38265 * 120.05847 * 0.58865 * 6 5 4 8 8 C 1.50700 * 119.94656 * 179.69832 * 7 6 5 9 9 O 1.42893 * 109.47763 * 244.98404 * 8 7 6 10 10 Si 1.86304 * 109.46966 * 4.98865 * 8 7 6 11 11 C 1.38272 * 120.10842 * 359.68636 * 7 6 5 12 12 C 1.38142 * 120.05773 * 0.02562 * 11 7 6 13 13 C 1.50699 * 109.46426 * 240.00405 * 2 1 3 14 14 O 1.21289 * 120.00141 * 119.99908 * 13 2 1 15 15 N 1.34777 * 120.00207 * 299.99624 * 13 2 1 16 16 C 1.46504 * 119.99894 * 180.02562 * 15 13 2 17 17 H 1.08995 * 112.85115 * 336.19759 * 16 15 13 18 18 C 1.53781 * 113.68968 * 107.46879 * 16 15 13 19 19 C 1.53780 * 87.08217 * 89.12306 * 18 16 15 20 20 H 1.09005 * 113.61343 * 270.88151 * 19 18 16 21 21 S 1.81397 * 113.61139 * 139.98303 * 19 18 16 22 22 O 1.42098 * 110.54251 * 194.12581 * 21 19 18 23 23 O 1.42100 * 110.54672 * 330.87936 * 21 19 18 24 24 C 1.76202 * 104.45276 * 82.50316 * 21 19 18 25 25 C 1.38236 * 120.00026 * 269.72612 * 24 21 19 26 26 C 1.38237 * 119.99818 * 179.76122 * 25 24 21 27 27 C 1.38236 * 120.00044 * 0.48814 * 26 25 24 28 28 C 1.38239 * 119.99749 * 359.78917 * 27 26 25 29 29 C 1.38227 * 120.00389 * 359.95523 * 28 27 26 30 30 C 1.53779 * 87.07975 * 25.43500 * 19 18 16 31 31 H 1.08997 * 109.46942 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46164 * 299.99432 * 1 2 3 33 33 H 1.08991 * 109.47394 * 59.99602 * 1 2 3 34 34 H 1.08991 * 109.47394 * 120.00398 * 2 1 3 35 35 H 1.07999 * 120.02883 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.96784 * 180.27170 * 6 5 4 37 37 H 1.09009 * 109.46590 * 124.97939 * 8 7 6 38 38 H 0.96699 * 114.00344 * 180.02562 * 9 8 7 39 39 H 1.48500 * 109.99496 * 299.99095 * 10 8 7 40 40 H 1.48495 * 110.00416 * 61.31302 * 10 8 7 41 41 H 1.07999 * 119.96645 * 179.97438 * 11 7 6 42 42 H 1.07996 * 120.03092 * 180.02562 * 12 11 7 43 43 H 0.96993 * 120.00114 * 0.02562 * 15 13 2 44 44 H 1.09011 * 113.61291 * 334.57815 * 18 16 15 45 45 H 1.09002 * 113.61507 * 203.67874 * 18 16 15 46 46 H 1.08000 * 119.99878 * 0.02562 * 25 24 21 47 47 H 1.08003 * 119.99908 * 180.25136 * 26 25 24 48 48 H 1.07997 * 119.99806 * 179.76474 * 27 26 25 49 49 H 1.08002 * 119.99256 * 179.97438 * 28 27 26 50 50 H 1.08002 * 120.00542 * 180.02562 * 29 28 27 51 51 H 1.08996 * 113.61781 * 89.11520 * 30 19 18 52 52 H 1.08999 * 113.61063 * 219.93570 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.1110 1.9646 1.2062 5 6 2.6775 3.2281 1.2932 6 6 2.7770 3.8561 2.5196 7 6 2.3238 3.2215 3.6614 8 6 2.4399 3.9061 4.9989 9 8 3.3382 3.1722 5.8334 10 14 3.0893 5.6354 4.7571 11 6 1.7640 1.9599 3.5780 12 6 1.6568 1.3301 2.3532 13 6 2.0322 -0.7103 -1.2306 14 8 2.7295 -0.1209 -2.0290 15 7 1.7066 -2.0007 -1.4439 16 6 2.1953 -2.6913 -2.6399 17 1 2.4389 -2.0081 -3.4534 18 6 3.2986 -3.7227 -2.3504 19 6 2.1743 -4.7526 -2.1502 20 1 1.8058 -4.8031 -1.1255 21 16 2.5516 -6.3847 -2.8461 22 8 1.3758 -7.1791 -2.9202 23 8 3.4242 -6.2619 -3.9609 24 6 3.5316 -7.1731 -1.6121 25 6 4.9076 -7.0431 -1.6349 26 6 5.6761 -7.6576 -0.6638 27 6 5.0692 -8.4103 0.3241 28 6 3.6935 -8.5450 0.3435 29 6 2.9247 -7.9262 -0.6244 30 6 1.3125 -3.8740 -3.0723 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8934 -0.5138 0.8899 35 1 3.0363 3.7220 0.4023 36 1 3.2139 4.8414 2.5873 37 1 1.4584 3.9494 5.4712 38 1 3.4609 3.5561 6.7124 39 1 4.4270 5.5901 4.1139 40 1 2.1481 6.4187 3.9171 41 1 1.4112 1.4662 4.4714 42 1 1.2191 0.3449 2.2885 43 1 1.1488 -2.4720 -0.8056 44 1 3.8652 -3.5129 -1.4430 45 1 3.9359 -3.9332 -3.2093 46 1 5.3820 -6.4580 -2.4088 47 1 6.7509 -7.5527 -0.6793 48 1 5.6698 -8.8935 1.0805 49 1 3.2195 -9.1334 1.1152 50 1 1.8499 -8.0310 -0.6090 51 1 1.4066 -4.1259 -4.1285 52 1 0.2753 -3.7875 -2.7485 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_10157680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:53:06 Heat of formation + Delta-G solvation = -76.494058 kcal Electronic energy + Delta-G solvation = -36920.684146 eV Core-core repulsion = 31946.074414 eV Total energy + Delta-G solvation = -4974.609732 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.137 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.98635 -41.12478 -40.06908 -39.74550 -38.81949 -38.24500 -37.22212 -37.10146 -34.91595 -33.03919 -32.33687 -32.22731 -32.02963 -31.51834 -27.32716 -27.04280 -26.64094 -25.32965 -24.33897 -24.12713 -23.74234 -22.57061 -21.64444 -21.17024 -19.95139 -19.56317 -19.18555 -18.69222 -18.32742 -18.02100 -17.26545 -17.05676 -17.00210 -16.90753 -16.88791 -16.69763 -16.16904 -15.97248 -15.78141 -15.57471 -15.53824 -15.14637 -14.97827 -14.62699 -14.52467 -14.40085 -14.26418 -14.05810 -13.96347 -13.90568 -13.88940 -13.79273 -13.65841 -13.29338 -13.26957 -13.26239 -13.14769 -12.95467 -12.47332 -12.24927 -12.21641 -12.16047 -12.04039 -11.97313 -11.90776 -11.79754 -11.27644 -11.02848 -10.40268 -10.31809 -10.28117 -10.20151 -10.07513 -9.33919 -4.96340 -1.02580 -0.20752 0.07499 0.18450 0.26649 1.27745 1.31314 1.37094 1.62560 1.75709 1.97309 2.34972 2.40429 2.49069 2.67897 2.87403 3.04172 3.33593 3.35516 3.43041 3.46875 3.58346 3.69001 3.71147 3.78276 3.79066 3.85425 3.92099 3.92234 4.07544 4.13420 4.17019 4.35541 4.37698 4.41051 4.42642 4.45813 4.49596 4.51001 4.59083 4.62545 4.67453 4.68180 4.78546 4.82871 4.83404 4.92393 5.00899 5.05313 5.08786 5.14242 5.24497 5.31084 5.34523 5.36730 5.52643 5.83239 6.14398 6.34791 6.93277 7.00269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.061 3.939 3 O -0.312 6.312 4 C 0.124 3.876 5 C -0.163 4.163 6 C -0.099 4.099 7 C -0.129 4.129 8 C -0.067 4.067 9 O -0.563 6.563 10 Si 0.764 3.236 11 C -0.051 4.051 12 C -0.201 4.201 13 C 0.521 3.479 14 O -0.565 6.565 15 N -0.688 5.688 16 C 0.129 3.871 17 H 0.100 0.900 18 C -0.128 4.128 19 C -0.574 4.574 20 H 0.192 0.808 21 S 2.499 3.501 22 O -0.970 6.970 23 O -0.968 6.968 24 C -0.666 4.666 25 C -0.041 4.041 26 C -0.149 4.149 27 C -0.070 4.070 28 C -0.146 4.146 29 C -0.041 4.041 30 C -0.117 4.117 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.403 0.597 39 H -0.302 1.302 40 H -0.292 1.292 41 H 0.154 0.846 42 H 0.166 0.834 43 H 0.423 0.577 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.144 0.856 47 H 0.150 0.850 48 H 0.154 0.846 49 H 0.154 0.846 50 H 0.151 0.849 51 H 0.112 0.888 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -1.136 11.448 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.002 3.998 3 O -0.225 6.225 4 C 0.078 3.922 5 C -0.181 4.181 6 C -0.117 4.117 7 C -0.130 4.130 8 C -0.177 4.177 9 O -0.373 6.373 10 Si 0.672 3.328 11 C -0.069 4.069 12 C -0.219 4.219 13 C 0.307 3.693 14 O -0.442 6.442 15 N -0.343 5.343 16 C 0.022 3.978 17 H 0.118 0.882 18 C -0.168 4.168 19 C -0.687 4.687 20 H 0.209 0.791 21 S 2.685 3.315 22 O -0.967 6.967 23 O -0.965 6.965 24 C -0.754 4.754 25 C -0.060 4.060 26 C -0.168 4.168 27 C -0.088 4.088 28 C -0.165 4.165 29 C -0.060 4.060 30 C -0.156 4.156 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.255 0.745 39 H -0.230 1.230 40 H -0.219 1.219 41 H 0.172 0.828 42 H 0.183 0.817 43 H 0.262 0.738 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.162 0.838 47 H 0.167 0.833 48 H 0.172 0.828 49 H 0.172 0.828 50 H 0.168 0.832 51 H 0.130 0.870 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.356 -0.821 8.799 9.453 hybrid contribution 0.220 -0.462 0.315 0.601 sum -3.136 -1.283 9.114 9.724 Atomic orbital electron populations 1.22411 0.90116 1.06083 1.04528 1.22491 0.97445 0.81958 0.97885 1.86186 1.81503 1.27238 1.27573 1.19123 0.95652 0.92711 0.84669 1.20466 1.04318 0.94793 0.98571 1.20803 0.99147 0.99185 0.92569 1.19650 1.02532 0.96954 0.93836 1.24618 0.98107 1.04859 0.90138 1.86435 1.65824 1.54702 1.30381 0.94608 0.76049 0.75226 0.86967 1.21109 0.94929 0.92908 0.97919 1.21631 1.05990 1.02795 0.91530 1.20496 0.79553 0.82334 0.86920 1.90776 1.38682 1.67010 1.47709 1.45299 1.53372 1.10334 1.25274 1.21661 0.94728 0.93018 0.88407 0.88216 1.23316 0.95429 0.92591 1.05437 1.31676 1.08195 1.14808 1.13976 0.79055 1.05172 0.73734 0.77603 0.74989 1.93534 1.49052 1.67629 1.86527 1.93541 1.66255 1.87347 1.49370 1.30444 1.07903 1.17905 1.19146 1.21193 0.91887 0.95822 0.97122 1.21670 1.01624 0.98332 0.95161 1.21918 0.95423 0.94302 0.97173 1.21689 0.94495 1.00553 0.99751 1.21241 1.01376 0.92088 0.91291 1.23210 1.00891 0.91813 0.99664 0.86629 0.89591 0.92010 0.85304 0.85279 0.86363 0.88291 0.74536 1.23046 1.21942 0.82835 0.81702 0.73808 0.88053 0.86888 0.83787 0.83256 0.82842 0.82796 0.83168 0.86996 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.36 9.07 71.98 0.65 2.01 16 2 C 0.06 -0.14 2.65 29.85 0.08 -0.06 16 3 O -0.31 -2.20 9.33 -73.41 -0.69 -2.88 16 4 C 0.12 0.72 6.60 22.51 0.15 0.86 16 5 C -0.16 -1.35 9.99 22.37 0.22 -1.13 16 6 C -0.10 -0.72 8.66 22.25 0.19 -0.53 16 7 C -0.13 -0.52 5.39 -19.85 -0.11 -0.63 16 8 C -0.07 0.10 2.79 71.24 0.20 0.30 16 9 O -0.56 0.93 12.81 -148.98 -1.91 -0.98 16 10 Si 0.76 -1.04 29.85 68.60 2.05 1.00 16 11 C -0.05 -0.04 9.68 22.25 0.22 0.17 16 12 C -0.20 0.01 8.24 22.36 0.18 0.19 16 13 C 0.52 0.84 7.23 87.66 0.63 1.48 16 14 O -0.56 -7.49 16.10 15.98 0.26 -7.23 16 15 N -0.69 4.73 5.16 -440.02 -2.27 2.46 16 16 C 0.13 -0.61 4.32 45.52 0.20 -0.42 16 17 H 0.10 0.00 7.46 -2.39 -0.02 -0.01 16 18 C -0.13 0.74 7.44 31.12 0.23 0.97 16 19 C -0.57 4.73 4.20 31.12 0.13 4.87 16 20 H 0.19 -2.99 8.14 -2.38 -0.02 -3.01 16 21 S 2.50 2.18 5.13 -56.49 -0.29 1.89 16 22 O -0.97 -6.99 17.13 -127.65 -2.19 -9.17 16 23 O -0.97 -7.40 16.30 -127.65 -2.08 -9.48 16 24 C -0.67 -0.56 5.66 22.27 0.13 -0.44 16 25 C -0.04 -0.03 9.47 22.27 0.21 0.18 16 26 C -0.15 0.24 10.05 22.27 0.22 0.47 16 27 C -0.07 0.23 10.05 22.27 0.22 0.45 16 28 C -0.15 0.41 10.05 22.27 0.22 0.63 16 29 C -0.04 0.03 9.47 22.27 0.21 0.24 16 30 C -0.12 0.97 7.42 31.12 0.23 1.20 16 31 H 0.12 -1.75 7.56 -2.39 -0.02 -1.77 16 32 H 0.09 -0.72 6.91 -2.38 -0.02 -0.74 16 33 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.13 -1.06 6.31 -2.39 -0.02 -1.07 16 35 H 0.13 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.12 0.83 4.86 -2.91 -0.01 0.82 16 37 H 0.10 -0.64 7.96 -2.38 -0.02 -0.66 16 38 H 0.40 -4.88 8.74 -74.06 -0.65 -5.53 16 39 H -0.30 -2.12 7.05 99.48 0.70 -1.42 16 40 H -0.29 -1.34 7.11 99.48 0.71 -0.64 16 41 H 0.15 -0.61 8.06 -2.91 -0.02 -0.63 16 42 H 0.17 -1.24 5.43 -2.91 -0.02 -1.26 16 43 H 0.42 -6.36 8.12 -92.71 -0.75 -7.12 16 44 H 0.10 -0.71 8.14 -2.38 -0.02 -0.73 16 45 H 0.11 -0.49 7.43 -2.39 -0.02 -0.51 16 46 H 0.14 -0.14 7.57 -2.91 -0.02 -0.17 16 47 H 0.15 -0.85 8.06 -2.91 -0.02 -0.88 16 48 H 0.15 -1.27 8.06 -2.91 -0.02 -1.29 16 49 H 0.15 -1.18 8.06 -2.91 -0.02 -1.20 16 50 H 0.15 -0.53 7.57 -2.91 -0.02 -0.55 16 51 H 0.11 -0.89 8.10 -2.39 -0.02 -0.91 16 52 H 0.13 -1.62 8.14 -2.39 -0.02 -1.64 16 Total: 0.00 -40.61 441.24 -3.07 -43.68 By element: Atomic # 1 Polarization: -29.71 SS G_CDS: -0.38 Total: -30.10 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 4.43 Total: 10.82 kcal Atomic # 7 Polarization: 4.73 SS G_CDS: -2.27 Total: 2.46 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -6.60 Total: -29.75 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: 2.05 Total: 1.00 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -0.29 Total: 1.89 kcal Total: -40.61 -3.07 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_10157680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.816 kcal (2) G-P(sol) polarization free energy of solvation -40.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds