Wall clock time and date at job start Sat Mar 6 2021 17:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35532 * 125.67460 * 2 1 4 4 C 1.35452 * 108.87222 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.07068 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.46891 * 119.96228 * 5 4 3 7 7 Si 1.86296 * 109.46926 * 359.96107 * 5 4 3 8 8 C 1.39836 * 107.86289 * 0.02562 * 4 3 2 9 9 C 1.37647 * 125.67991 * 180.02562 * 2 1 3 10 10 C 1.46678 * 126.23277 * 0.22646 * 9 2 1 11 11 O 1.21697 * 119.99939 * 354.03112 * 10 9 2 12 12 N 1.34776 * 120.00085 * 174.02905 * 10 9 2 13 13 C 1.46500 * 119.99925 * 185.19276 * 12 10 9 14 14 H 1.09000 * 112.85006 * 23.80317 * 13 12 10 15 15 C 1.53785 * 113.61491 * 154.99988 * 13 12 10 16 16 C 1.53780 * 87.08121 * 89.11335 * 15 13 12 17 17 H 1.09002 * 113.61319 * 270.80323 * 16 15 13 18 18 S 1.81399 * 113.61514 * 139.97917 * 16 15 13 19 19 O 1.42094 * 110.54533 * 296.62767 * 18 16 15 20 20 O 1.42100 * 110.53979 * 73.37558 * 18 16 15 21 21 C 1.76201 * 104.44927 * 184.99831 * 18 16 15 22 22 C 1.38231 * 119.99917 * 269.72404 * 21 18 16 23 23 C 1.38238 * 119.99663 * 179.74327 * 22 21 18 24 24 C 1.38230 * 120.00067 * 0.53801 * 23 22 21 25 25 C 1.38239 * 119.99822 * 359.73907 * 24 23 22 26 26 C 1.38229 * 120.00246 * 359.97438 * 25 24 23 27 27 C 1.53780 * 87.08069 * 25.43468 * 16 15 13 28 28 H 1.09003 * 109.47588 * 273.97162 * 1 2 3 29 29 H 1.09000 * 109.47293 * 33.97552 * 1 2 3 30 30 H 1.08997 * 109.46848 * 153.97462 * 1 2 3 31 31 H 1.08003 * 125.56637 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47288 * 239.95837 * 5 4 3 33 33 H 0.96698 * 113.99582 * 300.00002 * 6 5 4 34 34 H 1.48498 * 110.00116 * 58.68180 * 7 5 4 35 35 H 1.48506 * 109.99821 * 179.97438 * 7 5 4 36 36 H 1.07999 * 126.45900 * 180.02562 * 8 4 3 37 37 H 0.96995 * 119.99688 * 5.18490 * 12 10 9 38 38 H 1.09001 * 113.61388 * 203.66449 * 15 13 12 39 39 H 1.08999 * 113.61476 * 334.56262 * 15 13 12 40 40 H 1.07998 * 120.00593 * 0.02562 * 22 21 18 41 41 H 1.07999 * 120.00369 * 180.29824 * 23 22 21 42 42 H 1.08001 * 120.00226 * 179.76614 * 24 23 22 43 43 H 1.08006 * 119.99830 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.00688 * 180.02562 * 26 25 24 45 45 H 1.09006 * 113.61333 * 220.01956 * 27 16 15 46 46 H 1.09001 * 113.61780 * 89.11953 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0006 5 6 4.7536 1.6190 -0.0002 6 8 5.5398 1.3692 1.1667 7 14 4.1885 3.3942 -0.0001 8 6 3.5780 -0.6887 -0.0015 9 6 2.2678 -1.1181 -0.0005 10 6 1.8125 -2.5124 -0.0058 11 8 0.6268 -2.7657 0.0993 12 7 2.7071 -3.5131 -0.1271 13 6 2.2451 -4.8981 -0.2469 14 1 1.2285 -4.9734 -0.6327 15 6 3.2454 -5.8215 -0.9622 16 6 3.8642 -6.0912 0.4195 17 1 4.6516 -5.3876 0.6902 18 16 4.3471 -7.8211 0.6744 19 8 3.2070 -8.6682 0.6339 20 8 5.5150 -8.1282 -0.0745 21 6 4.8778 -7.8866 2.3533 22 6 6.2039 -7.6567 2.6685 23 6 6.6192 -7.7029 3.9862 24 6 5.7105 -7.9899 4.9876 25 6 4.3854 -8.2255 4.6718 26 6 3.9690 -8.1734 3.3547 27 6 2.4907 -5.7408 1.0158 28 1 -0.3634 0.0712 1.0252 29 1 -0.3634 0.8522 -0.5743 30 1 -0.3633 -0.9234 -0.4509 31 1 1.9081 2.1236 0.0004 32 1 5.3537 1.4288 -0.8901 33 1 5.0685 1.5186 1.9977 34 1 3.3431 3.6580 1.1919 35 1 5.3643 4.3015 0.0009 36 1 4.4583 -1.3143 -0.0018 37 1 3.6568 -3.3161 -0.1352 38 1 2.7835 -6.7000 -1.4128 39 1 3.9134 -5.2962 -1.6448 40 1 6.9147 -7.4365 1.8858 41 1 7.6543 -7.5185 4.2330 42 1 6.0357 -8.0297 6.0167 43 1 3.6756 -8.4501 5.4541 44 1 2.9337 -8.3570 3.1080 45 1 2.5495 -5.1503 1.9302 46 1 1.8225 -6.5972 1.1061 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12550010_10803934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:53:20 Heat of formation + Delta-G solvation = -16.157018 kcal Electronic energy + Delta-G solvation = -31813.818046 eV Core-core repulsion = 27378.844765 eV Total energy + Delta-G solvation = -4434.973281 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.118 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -42.65317 -41.13334 -40.13816 -39.19086 -38.10469 -37.84346 -36.95569 -34.86777 -33.75813 -32.39913 -32.09581 -30.98195 -28.46590 -27.25769 -27.09288 -25.76730 -24.32735 -23.91042 -23.79786 -21.49961 -21.17549 -20.55871 -19.93231 -19.18436 -18.89179 -18.22442 -17.67441 -17.21471 -17.06006 -16.92590 -16.86651 -16.69742 -16.05883 -15.95423 -15.69087 -15.61833 -15.47012 -15.29464 -14.99694 -14.60727 -14.50257 -14.30213 -14.11592 -14.04365 -13.90545 -13.88556 -13.58287 -13.34054 -13.30007 -13.26554 -13.09418 -12.99332 -12.43288 -12.33702 -12.30742 -12.17473 -11.82866 -11.80874 -11.30277 -11.16619 -10.53438 -10.44989 -10.34183 -10.11888 -9.77041 -9.35126 -4.98734 -1.02101 -0.23127 0.22062 0.34109 1.27083 1.41766 1.49119 1.58901 1.74962 1.96883 2.13934 2.22867 2.35406 2.63607 2.79430 2.97210 3.30959 3.35907 3.42207 3.55341 3.60328 3.71597 3.76955 3.82763 3.85027 3.92742 4.10303 4.19787 4.21782 4.24183 4.24594 4.28915 4.32430 4.41012 4.47877 4.57807 4.60308 4.62049 4.64348 4.69278 4.71469 4.84118 4.99139 5.09144 5.15867 5.26723 5.29393 5.57585 5.74902 5.81273 6.03367 6.29362 6.46583 7.02178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.403 5.403 3 C 0.030 3.970 4 C -0.205 4.205 5 C -0.037 4.037 6 O -0.532 6.532 7 Si 0.679 3.321 8 C -0.112 4.112 9 C -0.056 4.056 10 C 0.596 3.404 11 O -0.541 6.541 12 N -0.703 5.703 13 C 0.139 3.861 14 H 0.118 0.882 15 C -0.118 4.118 16 C -0.604 4.604 17 H 0.156 0.844 18 S 2.501 3.499 19 O -0.930 6.930 20 O -0.934 6.934 21 C -0.658 4.658 22 C -0.026 4.026 23 C -0.140 4.140 24 C -0.065 4.065 25 C -0.140 4.140 26 C -0.023 4.023 27 C -0.124 4.124 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.174 0.826 32 H 0.115 0.885 33 H 0.374 0.626 34 H -0.260 1.260 35 H -0.258 1.258 36 H 0.145 0.855 37 H 0.405 0.595 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.142 0.858 45 H 0.093 0.907 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 4.498 0.586 4.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.075 5.075 3 C -0.107 4.107 4 C -0.212 4.212 5 C -0.148 4.148 6 O -0.338 6.338 7 Si 0.581 3.419 8 C -0.138 4.138 9 C -0.169 4.169 10 C 0.385 3.615 11 O -0.419 6.419 12 N -0.355 5.355 13 C 0.033 3.967 14 H 0.136 0.864 15 C -0.157 4.157 16 C -0.713 4.713 17 H 0.173 0.827 18 S 2.681 3.319 19 O -0.927 6.927 20 O -0.931 6.931 21 C -0.745 4.745 22 C -0.044 4.044 23 C -0.159 4.159 24 C -0.083 4.083 25 C -0.159 4.159 26 C -0.042 4.042 27 C -0.164 4.164 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.191 0.809 32 H 0.133 0.867 33 H 0.222 0.778 34 H -0.185 1.185 35 H -0.183 1.183 36 H 0.163 0.837 37 H 0.241 0.759 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.159 0.841 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.159 0.841 45 H 0.111 0.889 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.886 4.211 0.047 4.614 hybrid contribution 0.954 0.202 2.006 2.231 sum -0.933 4.413 2.054 4.956 Atomic orbital electron populations 1.22393 0.75426 1.05920 1.04194 1.43814 1.07060 1.04644 1.51956 1.21884 0.90093 0.91736 1.06989 1.19741 0.93704 0.94776 1.12964 1.24278 0.92521 1.07326 0.90707 1.86586 1.41257 1.90107 1.15822 0.95371 0.82798 0.74969 0.88792 1.21184 0.94213 0.94685 1.03754 1.19935 0.90322 0.87457 1.19166 1.16943 0.85447 0.83458 0.75697 1.90818 1.16308 1.84718 1.50075 1.45254 1.09977 1.05237 1.74990 1.21647 0.99570 0.79835 0.95685 0.86366 1.23101 0.98307 1.01495 0.92825 1.31788 1.08101 1.24405 1.07039 0.82659 1.05379 0.74844 0.77251 0.74397 1.93589 1.51783 1.61416 1.85913 1.93586 1.47958 1.82284 1.69275 1.30507 1.02602 1.17697 1.23708 1.20995 0.93575 0.92283 0.97597 1.21362 1.00453 1.01250 0.92818 1.21573 0.93391 0.93383 0.99940 1.21367 0.96560 1.01288 0.96680 1.20985 0.99157 0.91731 0.92290 1.23247 0.91468 1.01890 0.99754 0.90253 0.89458 0.87534 0.80896 0.86705 0.77826 1.18502 1.18257 0.83727 0.75882 0.86977 0.88129 0.84093 0.84833 0.85047 0.84839 0.84071 0.88865 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.10 10.64 59.85 0.64 0.54 16 2 N -0.40 -0.02 3.16 -120.24 -0.38 -0.40 16 3 C 0.03 -0.03 9.94 -16.91 -0.17 -0.20 16 4 C -0.21 0.11 5.44 -105.02 -0.57 -0.46 16 5 C -0.04 0.03 3.02 36.01 0.11 0.14 16 6 O -0.53 -0.35 12.88 -35.23 -0.45 -0.81 16 7 Si 0.68 -1.20 30.59 -169.99 -5.20 -6.40 16 8 C -0.11 0.03 10.29 -39.12 -0.40 -0.37 16 9 C -0.06 -0.04 6.88 -81.98 -0.56 -0.60 16 10 C 0.60 0.70 7.77 -12.85 -0.10 0.60 16 11 O -0.54 -2.12 14.30 5.19 0.07 -2.05 16 12 N -0.70 1.19 5.25 -54.32 -0.29 0.90 16 13 C 0.14 -0.27 4.29 -67.12 -0.29 -0.56 16 14 H 0.12 -0.12 7.53 -51.93 -0.39 -0.51 16 15 C -0.12 0.38 7.42 -25.92 -0.19 0.18 16 16 C -0.60 1.81 4.19 -25.92 -0.11 1.70 16 17 H 0.16 -0.81 8.14 -51.93 -0.42 -1.23 16 18 S 2.50 1.07 5.09 -107.50 -0.55 0.53 16 19 O -0.93 -2.82 16.44 -57.54 -0.95 -3.77 16 20 O -0.93 -3.39 17.12 -57.54 -0.98 -4.37 16 21 C -0.66 -0.41 5.66 -39.58 -0.22 -0.64 16 22 C -0.03 -0.01 9.47 -39.58 -0.37 -0.38 16 23 C -0.14 0.06 10.05 -39.58 -0.40 -0.34 16 24 C -0.06 0.05 10.05 -39.58 -0.40 -0.35 16 25 C -0.14 0.06 10.05 -39.58 -0.40 -0.34 16 26 C -0.02 -0.01 9.47 -39.59 -0.37 -0.38 16 27 C -0.12 0.31 7.44 -25.92 -0.19 0.12 16 28 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 29 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 30 H 0.11 0.00 6.22 -51.93 -0.32 -0.32 16 31 H 0.17 -0.64 6.19 -52.48 -0.32 -0.97 16 32 H 0.12 -0.17 7.96 -51.93 -0.41 -0.58 16 33 H 0.37 -0.72 8.70 45.56 0.40 -0.32 16 34 H -0.26 -0.04 7.11 56.52 0.40 0.36 16 35 H -0.26 -0.48 7.11 56.52 0.40 -0.08 16 36 H 0.15 -0.29 7.45 -52.49 -0.39 -0.68 16 37 H 0.41 -1.55 7.61 -40.82 -0.31 -1.86 16 38 H 0.11 -0.42 8.10 -51.93 -0.42 -0.84 16 39 H 0.10 -0.44 8.14 -51.93 -0.42 -0.87 16 40 H 0.14 -0.14 7.57 -52.49 -0.40 -0.53 16 41 H 0.13 -0.33 8.06 -52.49 -0.42 -0.75 16 42 H 0.13 -0.38 8.06 -52.49 -0.42 -0.80 16 43 H 0.13 -0.33 8.06 -52.48 -0.42 -0.75 16 44 H 0.14 -0.16 7.57 -52.49 -0.40 -0.55 16 45 H 0.09 -0.24 8.14 -51.93 -0.42 -0.66 16 46 H 0.12 -0.33 7.53 -51.93 -0.39 -0.72 16 LS Contribution 398.40 15.07 6.00 6.00 Total: 0.00 -13.07 398.40 -12.67 -25.74 By element: Atomic # 1 Polarization: -8.07 SS G_CDS: -5.94 Total: -14.01 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -4.01 Total: -1.35 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -0.67 Total: 0.50 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -2.31 Total: -11.00 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -5.20 Total: -6.40 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -0.55 Total: 0.53 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -13.07 -12.67 -25.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_10803934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.580 kcal (2) G-P(sol) polarization free energy of solvation -13.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds