Wall clock time and date at job start Sat Mar 6 2021 17:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37651 * 125.67746 * 2 1 4 4 C 1.46684 * 126.23275 * 359.95694 * 3 2 1 5 5 O 1.21689 * 120.00213 * 4.65965 * 4 3 2 6 6 N 1.34782 * 119.99769 * 184.65298 * 4 3 2 7 7 C 1.46498 * 119.99627 * 174.89924 * 6 4 3 8 8 H 1.08998 * 112.85154 * 336.19931 * 7 6 4 9 9 C 1.53950 * 113.53544 * 107.50805 * 7 6 4 10 10 C 1.53779 * 87.01948 * 89.18741 * 9 7 6 11 11 H 1.09000 * 113.61412 * 270.76788 * 10 9 7 12 12 S 1.81402 * 113.61649 * 139.95440 * 10 9 7 13 13 O 1.42104 * 110.53965 * 329.23968 * 12 10 9 14 14 O 1.42100 * 110.54351 * 192.48830 * 12 10 9 15 15 C 1.76197 * 104.45116 * 80.85947 * 12 10 9 16 16 C 1.38236 * 119.99682 * 90.00217 * 15 12 10 17 17 C 1.38242 * 119.99736 * 179.97438 * 16 15 12 18 18 C 1.38234 * 119.99919 * 0.02872 * 17 16 15 19 19 C 1.38231 * 119.99987 * 359.96651 * 18 17 16 20 20 C 1.38228 * 120.00260 * 0.05742 * 19 18 17 21 21 C 1.53772 * 87.17305 * 25.36036 * 10 9 7 22 22 C 1.37876 * 107.53193 * 179.70392 * 3 2 1 23 23 C 1.39827 * 107.08405 * 0.25876 * 22 3 2 24 24 C 1.35449 * 107.86930 * 0.02562 * 23 22 3 25 25 C 1.50701 * 125.56811 * 180.02562 * 24 23 22 26 26 O 1.42894 * 109.47319 * 149.97962 * 25 24 23 27 27 Si 1.86295 * 109.47030 * 29.97071 * 25 24 23 28 28 H 1.08994 * 109.47202 * 95.78580 * 1 2 3 29 29 H 1.08996 * 109.47038 * 215.78988 * 1 2 3 30 30 H 1.09008 * 109.46938 * 335.78622 * 1 2 3 31 31 H 0.96997 * 120.00205 * 354.90555 * 6 4 3 32 32 H 1.09002 * 113.67118 * 334.65944 * 9 7 6 33 33 H 1.09001 * 113.61813 * 203.70947 * 9 7 6 34 34 H 1.08001 * 120.00349 * 0.02562 * 16 15 12 35 35 H 1.08002 * 119.99712 * 180.02562 * 17 16 15 36 36 H 1.08006 * 119.99587 * 179.70061 * 18 17 16 37 37 H 1.08001 * 119.99460 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.99880 * 179.97438 * 20 19 18 39 39 H 1.09007 * 113.61328 * 89.16102 * 21 10 9 40 40 H 1.09001 * 113.61763 * 220.05908 * 21 10 9 41 41 H 1.07997 * 126.45166 * 180.29851 * 22 3 2 42 42 H 1.08002 * 126.06848 * 180.02562 * 23 22 3 43 43 H 1.09004 * 109.46552 * 269.97151 * 25 24 23 44 44 H 0.96703 * 113.99707 * 299.99461 * 26 25 24 45 45 H 1.48499 * 109.99745 * 180.02562 * 27 25 24 46 46 H 1.48497 * 110.00362 * 301.32622 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8123 2.5125 -0.0009 5 8 0.6249 2.7648 0.0839 6 7 2.7091 3.5142 -0.0955 7 6 2.2493 4.9006 -0.2090 8 1 1.2398 4.9800 -0.6123 9 6 2.4731 5.7291 1.0691 10 6 3.8560 6.0862 0.4990 11 1 4.6384 5.3798 0.7765 12 16 4.3342 7.8133 0.7807 13 8 3.1863 8.6504 0.8080 14 8 5.4688 8.1511 -0.0053 15 6 4.9306 7.8396 2.4385 16 6 6.2690 7.6083 2.6952 17 6 6.7370 7.6294 3.9958 18 6 5.8664 7.8813 5.0396 19 6 4.5280 8.1127 4.7828 20 6 4.0600 8.0911 3.4824 21 6 3.2623 5.8312 -0.8964 22 6 3.5780 0.6888 0.0068 23 6 3.5521 -0.7093 0.0049 24 6 2.2555 -1.1009 -0.0035 25 6 1.7709 -2.5279 -0.0077 26 8 0.5090 -2.6044 0.6585 27 14 3.0064 -3.6059 0.8765 28 1 -0.3633 -0.1036 -1.0224 29 1 -0.3633 -0.8336 0.6010 30 1 -0.3633 0.9373 0.4215 31 1 3.6588 3.3173 -0.0885 32 1 2.5173 5.1287 1.9778 33 1 1.8033 6.5844 1.1580 34 1 6.9493 7.4118 1.8797 35 1 7.7828 7.4491 4.1964 36 1 6.2312 7.8931 6.0561 37 1 3.8480 8.3099 5.5983 38 1 3.0142 8.2715 3.2818 39 1 2.8086 6.7145 -1.3460 40 1 3.9425 5.3130 -1.5723 41 1 4.4582 1.3144 0.0131 42 1 4.4132 -1.3612 0.0092 43 1 1.6599 -2.8708 -1.0364 44 1 0.5328 -2.3139 1.5805 45 1 2.5404 -5.0159 0.8787 46 1 4.3311 -3.5103 0.2122 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_10803936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:53:24 Heat of formation + Delta-G solvation = -17.750455 kcal Electronic energy + Delta-G solvation = -31813.651043 eV Core-core repulsion = 27378.608666 eV Total energy + Delta-G solvation = -4435.042378 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.118 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.63775 -41.06051 -40.03870 -39.19281 -38.21526 -37.79107 -37.07183 -34.80071 -33.61406 -32.30912 -31.99943 -31.34957 -27.77218 -27.40543 -27.02226 -26.10553 -24.17471 -23.71463 -23.36750 -21.71645 -21.10407 -20.50545 -19.89008 -19.14752 -18.81293 -18.26225 -17.84797 -17.11445 -16.99453 -16.95399 -16.89004 -16.35049 -16.02785 -15.81600 -15.60602 -15.49794 -15.36399 -15.01382 -14.88788 -14.54140 -14.49440 -14.42456 -14.20492 -14.00814 -13.83431 -13.75065 -13.68040 -13.24324 -13.23854 -13.18820 -13.11849 -13.01126 -12.21985 -12.19509 -12.12124 -12.02411 -12.00812 -11.76209 -11.25015 -11.17504 -10.66036 -10.36900 -10.27112 -10.04396 -9.76762 -9.12761 -4.91151 -0.99452 -0.17580 0.29721 0.33359 1.17611 1.46336 1.71549 1.74011 1.79009 2.02579 2.27506 2.29812 2.43530 2.72940 2.90367 3.07700 3.28091 3.37328 3.52595 3.55204 3.68815 3.81784 3.88602 3.95197 3.99891 4.10315 4.30901 4.33547 4.38490 4.40020 4.41502 4.44846 4.49095 4.54840 4.55358 4.68640 4.71154 4.77923 4.83571 4.89010 4.95434 5.04031 5.08349 5.13568 5.27359 5.39091 5.39572 5.70378 5.86261 5.97040 6.11213 6.42477 6.56033 7.07976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.401 5.401 3 C -0.080 4.080 4 C 0.592 3.408 5 O -0.579 6.579 6 N -0.687 5.687 7 C 0.134 3.866 8 H 0.103 0.897 9 C -0.125 4.125 10 C -0.574 4.574 11 H 0.188 0.812 12 S 2.501 3.499 13 O -0.966 6.966 14 O -0.972 6.972 15 C -0.666 4.666 16 C -0.042 4.042 17 C -0.147 4.147 18 C -0.070 4.070 19 C -0.149 4.149 20 C -0.040 4.040 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.214 4.214 24 C 0.014 3.986 25 C -0.058 4.058 26 O -0.553 6.553 27 Si 0.812 3.188 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.419 0.581 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.175 0.825 42 H 0.161 0.839 43 H 0.112 0.888 44 H 0.396 0.604 45 H -0.296 1.296 46 H -0.273 1.273 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 -4.510 5.398 8.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.074 5.074 3 C -0.194 4.194 4 C 0.382 3.618 5 O -0.461 6.461 6 N -0.339 5.339 7 C 0.027 3.973 8 H 0.121 0.879 9 C -0.164 4.164 10 C -0.687 4.687 11 H 0.205 0.795 12 S 2.686 3.314 13 O -0.964 6.964 14 O -0.969 6.969 15 C -0.753 4.753 16 C -0.061 4.061 17 C -0.165 4.165 18 C -0.088 4.088 19 C -0.167 4.167 20 C -0.059 4.059 21 C -0.159 4.159 22 C -0.149 4.149 23 C -0.237 4.237 24 C -0.104 4.104 25 C -0.167 4.167 26 O -0.361 6.361 27 Si 0.714 3.286 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.257 0.743 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.193 0.807 42 H 0.179 0.821 43 H 0.129 0.871 44 H 0.246 0.754 45 H -0.224 1.224 46 H -0.199 1.199 Dipole moment (debyes) X Y Z Total from point charges 3.256 -4.413 4.244 6.935 hybrid contribution 0.129 -0.059 -0.112 0.181 sum 3.385 -4.471 4.132 6.966 Atomic orbital electron populations 1.22591 0.75644 1.06368 1.04027 1.43912 1.07184 1.04384 1.51906 1.20135 0.91366 0.87236 1.20627 1.17146 0.85245 0.84170 0.75282 1.90783 1.17854 1.85224 1.52227 1.45114 1.10253 1.04546 1.74001 1.21681 0.99297 0.79890 0.96469 0.87891 1.23328 0.91478 1.01827 0.99810 1.31656 1.08650 1.21197 1.07191 0.79463 1.05135 0.73601 0.78585 0.74037 1.93539 1.51908 1.64439 1.86484 1.93532 1.51376 1.83182 1.68799 1.30431 1.03600 1.18610 1.22701 1.21236 0.93276 0.92694 0.98881 1.21685 1.01690 1.00780 0.92390 1.21916 0.93394 0.92634 1.00884 1.21671 0.96975 1.00888 0.97192 1.21199 0.99887 0.92300 0.92542 1.23223 0.98338 1.01396 0.92898 1.21667 0.94496 0.95474 1.03283 1.20915 0.95293 0.95891 1.11628 1.21384 0.91214 0.89452 1.08354 1.25208 0.94442 0.94271 1.02745 1.86458 1.30063 1.88896 1.30722 0.92974 0.73558 0.74039 0.88026 0.91802 0.86309 0.89132 0.74252 0.88078 0.86691 0.83322 0.82879 0.82825 0.83139 0.83636 0.86776 0.86167 0.80738 0.82121 0.87055 0.75367 1.22369 1.19906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.11 10.30 127.77 1.32 1.43 16 2 N -0.40 -1.03 3.16 -519.70 -1.64 -2.68 16 3 C -0.08 -0.16 6.89 40.35 0.28 0.11 16 4 C 0.59 1.91 7.77 86.45 0.67 2.58 16 5 O -0.58 -6.00 14.18 -4.31 -0.06 -6.06 16 6 N -0.69 2.89 5.25 -443.73 -2.33 0.57 16 7 C 0.13 -0.53 4.30 45.57 0.20 -0.34 16 8 H 0.10 -0.04 7.53 -2.39 -0.02 -0.05 16 9 C -0.12 0.68 7.45 31.18 0.23 0.91 16 10 C -0.57 4.16 4.19 31.12 0.13 4.29 16 11 H 0.19 -2.57 8.14 -2.39 -0.02 -2.59 16 12 S 2.50 3.17 5.11 -56.49 -0.29 2.88 16 13 O -0.97 -7.31 16.35 -127.65 -2.09 -9.40 16 14 O -0.97 -7.63 17.13 -127.65 -2.19 -9.81 16 15 C -0.67 -0.75 5.66 22.27 0.13 -0.62 16 16 C -0.04 0.01 9.47 22.27 0.21 0.22 16 17 C -0.15 0.36 10.05 22.27 0.22 0.58 16 18 C -0.07 0.22 10.05 22.27 0.22 0.45 16 19 C -0.15 0.27 10.05 22.27 0.22 0.49 16 20 C -0.04 -0.02 9.47 22.27 0.21 0.19 16 21 C -0.12 0.85 7.42 31.12 0.23 1.08 16 22 C -0.12 0.33 10.36 22.57 0.23 0.57 16 23 C -0.21 0.41 9.37 22.01 0.21 0.62 16 24 C 0.01 0.00 6.15 41.34 0.25 0.25 16 25 C -0.06 0.16 2.99 71.24 0.21 0.37 16 26 O -0.55 1.66 10.11 -148.98 -1.51 0.15 16 27 Si 0.81 -4.38 31.29 68.60 2.15 -2.24 16 28 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.12 -0.23 5.24 -2.39 -0.01 -0.24 16 30 H 0.09 0.47 5.93 -2.38 -0.01 0.46 16 31 H 0.42 -4.35 7.60 -92.71 -0.70 -5.06 16 32 H 0.10 -0.66 8.14 -2.39 -0.02 -0.67 16 33 H 0.11 -0.55 7.46 -2.39 -0.02 -0.57 16 34 H 0.15 -0.40 7.57 -2.91 -0.02 -0.42 16 35 H 0.15 -1.10 8.06 -2.91 -0.02 -1.12 16 36 H 0.15 -1.27 8.06 -2.91 -0.02 -1.29 16 37 H 0.15 -0.92 8.06 -2.91 -0.02 -0.95 16 38 H 0.15 -0.21 7.57 -2.91 -0.02 -0.23 16 39 H 0.11 -0.84 8.10 -2.38 -0.02 -0.86 16 40 H 0.12 -1.29 8.14 -2.39 -0.02 -1.31 16 41 H 0.18 -1.71 7.45 -2.91 -0.02 -1.73 16 42 H 0.16 -0.81 6.62 -2.91 -0.02 -0.83 16 43 H 0.11 -0.15 7.96 -2.38 -0.02 -0.17 16 44 H 0.40 -4.03 8.29 -74.06 -0.61 -4.65 16 45 H -0.30 -0.55 7.11 99.48 0.71 0.16 16 46 H -0.27 0.50 6.76 99.48 0.67 1.17 16 Total: 0.00 -31.13 392.42 -3.05 -34.17 By element: Atomic # 1 Polarization: -20.49 SS G_CDS: -0.27 Total: -20.76 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 5.18 Total: 13.18 kcal Atomic # 7 Polarization: 1.86 SS G_CDS: -3.97 Total: -2.11 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -5.84 Total: -25.13 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.15 Total: -2.24 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -0.29 Total: 2.88 kcal Total: -31.13 -3.05 -34.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_10803936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.422 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds