Wall clock time and date at job start Sat Mar 6 2021 17:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35455 * 125.56257 * 2 1 4 4 C 1.50705 * 126.06679 * 359.76468 * 3 2 1 5 5 O 1.42893 * 109.47110 * 245.15944 * 4 3 2 6 6 Si 1.86305 * 109.46913 * 125.16432 * 4 3 2 7 7 C 1.39833 * 107.86693 * 179.73277 * 3 2 1 8 8 C 1.50698 * 126.46128 * 179.97438 * 7 3 2 9 9 C 1.37868 * 107.08301 * 359.97438 * 7 3 2 10 10 C 1.46678 * 126.23205 * 179.97438 * 9 7 3 11 11 O 1.21693 * 120.00196 * 0.02562 * 10 9 7 12 12 N 1.34786 * 120.00014 * 180.02562 * 10 9 7 13 13 C 1.46498 * 119.99831 * 180.02562 * 12 10 9 14 14 H 1.08998 * 112.85444 * 334.67414 * 13 12 10 15 15 C 1.53787 * 113.61032 * 105.86804 * 13 12 10 16 16 C 1.54051 * 86.98507 * 89.16230 * 15 13 12 17 17 H 1.09004 * 113.60673 * 270.88187 * 16 15 13 18 18 S 1.81399 * 113.69565 * 139.99074 * 16 15 13 19 19 O 1.42101 * 110.54183 * 194.08689 * 18 16 15 20 20 O 1.42093 * 110.54323 * 330.83893 * 18 16 15 21 21 C 1.76200 * 104.45064 * 82.46548 * 18 16 15 22 22 C 1.38245 * 119.99690 * 269.72547 * 21 18 16 23 23 C 1.38236 * 119.99749 * 179.80939 * 22 21 18 24 24 C 1.38239 * 120.00018 * 0.42050 * 23 22 21 25 25 C 1.38230 * 119.99843 * 359.80873 * 24 23 22 26 26 C 1.38232 * 120.00431 * 0.02562 * 25 24 23 27 27 C 1.53778 * 87.08060 * 25.42964 * 16 15 13 28 28 N 1.35535 * 125.56632 * 179.68738 * 2 1 3 29 29 H 1.09002 * 109.46892 * 84.73229 * 1 2 3 30 30 H 1.08997 * 109.47076 * 204.73524 * 1 2 3 31 31 H 1.09005 * 109.47330 * 324.72881 * 1 2 3 32 32 H 1.09003 * 109.47109 * 5.16822 * 4 3 2 33 33 H 0.96692 * 114.00853 * 300.00427 * 5 4 3 34 34 H 1.48499 * 110.00019 * 58.67940 * 6 4 3 35 35 H 1.48498 * 109.99736 * 180.02562 * 6 4 3 36 36 H 1.09005 * 109.46663 * 89.99564 * 8 7 3 37 37 H 1.08994 * 109.47409 * 209.99998 * 8 7 3 38 38 H 1.09003 * 109.47058 * 330.00616 * 8 7 3 39 39 H 0.97001 * 119.99669 * 0.02562 * 12 10 9 40 40 H 1.09005 * 113.61256 * 203.66075 * 15 13 12 41 41 H 1.08996 * 113.61392 * 334.56188 * 15 13 12 42 42 H 1.07996 * 119.99669 * 0.02562 * 22 21 18 43 43 H 1.07998 * 119.99615 * 180.20765 * 23 22 21 44 44 H 1.08001 * 119.99809 * 179.79174 * 24 23 22 45 45 H 1.08005 * 120.00067 * 179.97438 * 25 24 23 46 46 H 1.07993 * 120.00403 * 179.97438 * 26 25 24 47 47 H 1.08994 * 113.61289 * 220.02792 * 27 16 15 48 48 H 1.08994 * 113.68839 * 89.12959 * 27 16 15 49 49 H 0.96992 * 125.67362 * 0.24856 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8198 2.5321 -0.0050 5 8 2.2109 3.1596 -1.2278 6 14 2.5794 3.4437 1.4313 7 6 3.6269 0.6769 0.0062 8 6 4.8485 1.5593 0.0079 9 6 3.6122 -0.7017 0.0105 10 6 4.7860 -1.5813 0.0170 11 8 5.9049 -1.1028 0.0196 12 7 4.6254 -2.9195 0.0202 13 6 5.7977 -3.7979 0.0272 14 1 6.6826 -3.3264 -0.4003 15 6 6.0543 -4.4718 1.3856 16 6 5.1372 -5.6112 0.9019 17 1 4.0844 -5.4532 1.1358 18 16 5.7217 -7.2644 1.3664 19 8 5.0290 -8.2632 0.6303 20 8 7.1387 -7.2814 1.4702 21 6 5.1619 -7.4792 3.0233 22 6 5.9657 -7.0936 4.0798 23 6 5.5250 -7.2584 5.3796 24 6 4.2841 -7.8170 5.6231 25 6 3.4824 -8.2069 4.5667 26 6 3.9217 -8.0389 3.2668 27 6 5.5179 -5.2033 -0.5311 28 7 2.2953 -1.1025 0.0060 29 1 -0.3633 0.0944 -1.0234 30 1 -0.3633 -0.9334 0.4300 31 1 -0.3634 0.8390 0.5934 32 1 0.7337 2.5546 0.0839 33 1 3.1666 3.1759 -1.3735 34 1 4.0606 3.3930 1.3390 35 1 2.1184 4.8553 1.4380 36 1 5.1392 1.7753 1.0360 37 1 5.6661 1.0491 -0.5013 38 1 4.6237 2.4919 -0.5096 39 1 3.7335 -3.3009 0.0177 40 1 7.0902 -4.7777 1.5325 41 1 5.6522 -3.9151 2.2320 42 1 6.9365 -6.6603 3.8896 43 1 6.1516 -6.9541 6.2049 44 1 3.9412 -7.9489 6.6387 45 1 2.5131 -8.6437 4.7569 46 1 3.2955 -8.3440 2.4415 47 1 4.6830 -5.2367 -1.2309 48 1 6.4071 -5.7081 -0.9085 49 1 1.9834 -2.0209 0.0076 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_12297754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:53:38 Heat of formation + Delta-G solvation = -34.056853 kcal Electronic energy + Delta-G solvation = -34077.345304 eV Core-core repulsion = 29486.058209 eV Total energy + Delta-G solvation = -4591.287095 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.133 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.70232 -41.07984 -40.06339 -39.21567 -38.24531 -37.90543 -37.09947 -34.73761 -33.77750 -32.75584 -32.33096 -32.02430 -29.30629 -28.08127 -27.06029 -26.87326 -25.95980 -24.18877 -23.73780 -22.80320 -21.21684 -20.99535 -20.20270 -19.90512 -19.52539 -18.98675 -18.07732 -17.77867 -17.16213 -16.99035 -16.95862 -16.72430 -16.48376 -16.05381 -15.74955 -15.66675 -15.52313 -15.37954 -15.06206 -14.74895 -14.51919 -14.42608 -14.36488 -14.14107 -14.01293 -13.85250 -13.77865 -13.71052 -13.53766 -13.40261 -13.26520 -13.26157 -13.14878 -13.10454 -12.62644 -12.40456 -12.24391 -12.18384 -12.04227 -11.79031 -11.63466 -11.27236 -11.05913 -10.74947 -10.39959 -10.31544 -10.06940 -9.56993 -8.98583 -4.86572 -1.02437 -0.20197 0.27217 0.33064 1.28970 1.55622 1.71850 1.74507 1.86604 2.04959 2.12314 2.22769 2.40887 2.68028 2.87344 3.04218 3.34524 3.48741 3.53204 3.74670 3.78708 3.84645 3.86434 3.92789 3.95029 4.08154 4.13217 4.35583 4.36240 4.38888 4.42322 4.46197 4.48428 4.51153 4.58026 4.66313 4.68714 4.69996 4.79244 4.82149 4.83638 4.92963 4.97765 5.02493 5.05880 5.16758 5.25069 5.27539 5.35574 5.37305 5.68524 5.83812 5.84389 6.33654 6.50894 6.53342 7.04655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.100 3.900 3 C -0.223 4.223 4 C -0.037 4.037 5 O -0.550 6.550 6 Si 0.735 3.265 7 C -0.079 4.079 8 C -0.095 4.095 9 C -0.073 4.073 10 C 0.593 3.407 11 O -0.560 6.560 12 N -0.700 5.700 13 C 0.132 3.868 14 H 0.104 0.896 15 C -0.125 4.125 16 C -0.574 4.574 17 H 0.187 0.813 18 S 2.501 3.499 19 O -0.971 6.971 20 O -0.966 6.966 21 C -0.666 4.666 22 C -0.041 4.041 23 C -0.149 4.149 24 C -0.070 4.070 25 C -0.147 4.147 26 C -0.042 4.042 27 C -0.119 4.119 28 N -0.519 5.519 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.129 0.871 33 H 0.377 0.623 34 H -0.268 1.268 35 H -0.304 1.304 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.412 0.588 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.149 0.851 47 H 0.119 0.881 48 H 0.113 0.887 49 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.585 -1.471 4.571 9.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.020 4.020 3 C -0.229 4.229 4 C -0.148 4.148 5 O -0.358 6.358 6 Si 0.640 3.360 7 C -0.088 4.088 8 C -0.152 4.152 9 C -0.185 4.185 10 C 0.383 3.617 11 O -0.438 6.438 12 N -0.352 5.352 13 C 0.025 3.975 14 H 0.122 0.878 15 C -0.165 4.165 16 C -0.687 4.687 17 H 0.205 0.795 18 S 2.687 3.313 19 O -0.968 6.968 20 O -0.964 6.964 21 C -0.754 4.754 22 C -0.060 4.060 23 C -0.167 4.167 24 C -0.088 4.088 25 C -0.165 4.165 26 C -0.061 4.061 27 C -0.158 4.158 28 N -0.118 5.118 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.146 0.854 33 H 0.227 0.773 34 H -0.193 1.193 35 H -0.232 1.232 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.249 0.751 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.163 0.837 43 H 0.168 0.832 44 H 0.172 0.828 45 H 0.172 0.828 46 H 0.167 0.833 47 H 0.138 0.862 48 H 0.132 0.868 49 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -7.423 -1.270 4.296 8.670 hybrid contribution 0.053 -0.226 -0.414 0.475 sum -7.371 -1.496 3.882 8.464 Atomic orbital electron populations 1.20665 0.84883 1.05606 1.04339 1.20707 0.94839 0.84833 1.01602 1.19443 0.92081 0.95682 1.15690 1.24352 1.05294 0.91021 0.94091 1.86567 1.28974 1.80568 1.39731 0.94466 0.79681 0.77497 0.84338 1.19834 0.94912 0.91885 1.02166 1.20536 0.94989 0.97421 1.02217 1.19777 0.83644 0.93461 1.21587 1.17133 0.87214 0.81879 0.75503 1.90837 1.25670 1.75693 1.51642 1.45328 1.09908 1.04564 1.75356 1.21650 0.89726 0.89630 0.96535 0.87830 1.23350 0.99999 0.93636 0.99476 1.31706 1.13116 1.16486 1.07387 0.79522 1.05119 0.74246 0.77782 0.74172 1.93534 1.75562 1.56458 1.71282 1.93540 1.29247 1.87339 1.86239 1.30435 1.05985 1.16446 1.22514 1.21203 0.98364 0.93801 0.92588 1.21677 0.97416 1.00382 0.97256 1.21919 0.93341 0.92669 1.00878 1.21683 1.01688 1.00844 0.92304 1.21229 0.93196 0.92493 0.99157 1.23202 1.05130 0.94955 0.92489 1.41752 1.04115 1.09289 1.56653 0.89825 0.88957 0.88144 0.85364 0.77326 1.19345 1.23220 0.91294 0.91260 0.92011 0.75125 0.86712 0.88153 0.83690 0.83171 0.82820 0.82840 0.83289 0.86216 0.86841 0.72666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 1.08 9.97 71.24 0.71 1.79 16 2 C 0.10 -0.50 7.13 41.34 0.29 -0.20 16 3 C -0.22 0.02 4.66 -20.12 -0.09 -0.07 16 4 C -0.04 0.01 2.86 71.24 0.20 0.21 16 5 O -0.55 -2.43 12.88 -148.98 -1.92 -4.35 16 6 Si 0.74 0.08 30.98 68.60 2.13 2.20 16 7 C -0.08 -0.26 5.82 -19.57 -0.11 -0.38 16 8 C -0.09 -0.50 7.72 71.24 0.55 0.05 16 9 C -0.07 -0.04 7.06 40.35 0.28 0.24 16 10 C 0.59 1.34 7.79 86.45 0.67 2.01 16 11 O -0.56 -5.87 14.42 -4.33 -0.06 -5.94 16 12 N -0.70 4.02 5.26 -443.97 -2.34 1.69 16 13 C 0.13 -0.63 4.30 45.52 0.20 -0.43 16 14 H 0.10 -0.08 7.50 -2.39 -0.02 -0.10 16 15 C -0.12 0.75 7.46 31.21 0.23 0.99 16 16 C -0.57 4.71 4.21 31.21 0.13 4.84 16 17 H 0.19 -2.82 8.14 -2.39 -0.02 -2.84 16 18 S 2.50 1.40 5.13 -56.49 -0.29 1.11 16 19 O -0.97 -6.83 17.13 -127.65 -2.19 -9.02 16 20 O -0.97 -6.89 16.31 -127.65 -2.08 -8.97 16 21 C -0.67 -0.29 5.66 22.27 0.13 -0.16 16 22 C -0.04 0.00 9.47 22.27 0.21 0.21 16 23 C -0.15 0.33 10.05 22.27 0.22 0.56 16 24 C -0.07 0.26 10.05 22.27 0.22 0.49 16 25 C -0.15 0.47 10.05 22.27 0.22 0.69 16 26 C -0.04 0.04 9.47 22.27 0.21 0.25 16 27 C -0.12 0.95 7.41 31.12 0.23 1.18 16 28 N -0.52 3.50 5.99 -171.93 -1.03 2.47 16 29 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H 0.09 -1.38 8.14 -2.39 -0.02 -1.40 16 31 H 0.10 -1.27 7.27 -2.38 -0.02 -1.28 16 32 H 0.13 -0.52 6.66 -2.39 -0.02 -0.54 16 33 H 0.38 0.44 6.58 -74.06 -0.49 -0.04 16 34 H -0.27 -1.13 5.05 99.48 0.50 -0.63 16 35 H -0.30 -2.25 7.11 99.48 0.71 -1.54 16 36 H 0.07 0.41 7.16 -2.38 -0.02 0.40 16 37 H 0.07 0.60 6.48 -2.39 -0.02 0.58 16 38 H 0.06 0.17 5.08 -2.39 -0.01 0.16 16 39 H 0.41 -5.29 7.83 -92.71 -0.73 -6.02 16 40 H 0.11 -0.57 7.44 -2.38 -0.02 -0.59 16 41 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.15 -0.25 7.56 -2.91 -0.02 -0.27 16 43 H 0.15 -0.96 8.06 -2.91 -0.02 -0.99 16 44 H 0.15 -1.35 8.06 -2.91 -0.02 -1.37 16 45 H 0.15 -1.23 8.06 -2.91 -0.02 -1.25 16 46 H 0.15 -0.55 7.57 -2.91 -0.02 -0.57 16 47 H 0.12 -1.43 8.14 -2.39 -0.02 -1.45 16 48 H 0.11 -0.90 8.10 -2.39 -0.02 -0.92 16 49 H 0.43 -6.17 8.19 -92.71 -0.76 -6.93 16 Total: 0.00 -33.39 409.67 -4.37 -37.76 By element: Atomic # 1 Polarization: -28.11 SS G_CDS: -1.11 Total: -29.22 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 4.52 Total: 12.26 kcal Atomic # 7 Polarization: 7.52 SS G_CDS: -3.37 Total: 4.16 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -6.25 Total: -28.28 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: 2.13 Total: 2.20 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -0.29 Total: 1.11 kcal Total: -33.39 -4.37 -37.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_12297754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.705 kcal (2) G-P(sol) polarization free energy of solvation -33.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds