Wall clock time and date at job start Sat Mar 6 2021 17:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47202 * 2 1 4 4 C 1.50697 * 109.47648 * 120.00368 * 2 1 3 5 5 C 1.37852 * 119.88917 * 65.29662 * 4 2 1 6 6 C 1.39664 * 119.87763 * 180.23567 * 5 4 2 7 7 C 1.47691 * 120.16844 * 179.74150 * 6 5 4 8 8 O 1.21568 * 120.00324 * 179.72586 * 7 6 5 9 9 N 1.34781 * 119.99803 * 359.72796 * 7 6 5 10 10 C 1.46504 * 119.99665 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.90940 * 336.24759 * 10 9 7 12 12 C 1.53779 * 113.61484 * 107.49929 * 10 9 7 13 13 C 1.53785 * 87.08093 * 89.11287 * 12 10 9 14 14 H 1.09002 * 113.61570 * 270.88522 * 13 12 10 15 15 S 1.81402 * 113.69069 * 139.99057 * 13 12 10 16 16 O 1.42096 * 110.54223 * 192.56319 * 15 13 12 17 17 O 1.42104 * 110.54421 * 329.31231 * 15 13 12 18 18 C 1.76196 * 104.44932 * 80.93663 * 15 13 12 19 19 C 1.38233 * 120.00422 * 269.72857 * 18 15 13 20 20 C 1.38236 * 120.00713 * 179.76500 * 19 18 15 21 21 C 1.38238 * 119.99599 * 0.48482 * 20 19 18 22 22 C 1.38237 * 119.99695 * 359.79040 * 21 20 19 23 23 C 1.38232 * 120.00375 * 359.95409 * 22 21 20 24 24 C 1.53781 * 87.08241 * 25.43228 * 13 12 10 25 25 C 1.39821 * 119.66407 * 359.47082 * 6 5 4 26 26 F 1.35102 * 120.10991 * 180.29969 * 25 6 5 27 27 C 1.38323 * 119.78089 * 0.27220 * 25 6 5 28 28 C 1.38202 * 120.11690 * 359.97438 * 27 25 6 29 29 H 0.96700 * 114.00195 * 59.99565 * 1 2 3 30 30 H 1.09008 * 109.46545 * 240.00523 * 2 1 3 31 31 H 1.48500 * 109.99997 * 298.68366 * 3 2 1 32 32 H 1.48492 * 110.00011 * 60.00544 * 3 2 1 33 33 H 1.08001 * 120.06692 * 359.97438 * 5 4 2 34 34 H 0.96996 * 120.00382 * 359.97438 * 9 7 6 35 35 H 1.09003 * 113.61775 * 334.57164 * 12 10 9 36 36 H 1.08996 * 113.61960 * 203.65890 * 12 10 9 37 37 H 1.08008 * 119.99860 * 0.02562 * 19 18 15 38 38 H 1.07996 * 120.00801 * 180.25067 * 20 19 18 39 39 H 1.07997 * 120.00182 * 179.76656 * 21 20 19 40 40 H 1.08002 * 119.99761 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.00370 * 179.97438 * 23 22 21 42 42 H 1.09005 * 113.61302 * 89.11252 * 24 13 12 43 43 H 1.08993 * 113.62030 * 220.02098 * 24 13 12 44 44 H 1.08003 * 119.93866 * 180.02562 * 27 25 6 45 45 H 1.07996 * 119.82736 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.6896 -2.0579 1.3925 6 6 2.1511 -2.7150 2.5352 7 6 1.8906 -4.1572 2.7181 8 8 2.2980 -4.7273 3.7116 9 7 1.2013 -4.8414 1.7836 10 6 0.9424 -6.2718 1.9654 11 1 1.6620 -6.7523 2.6282 12 6 -0.5216 -6.5943 2.3081 13 6 -0.7734 -6.6867 0.7938 14 1 -1.0499 -5.7359 0.3383 15 16 -1.8811 -8.0431 0.3205 16 8 -1.8421 -8.2516 -1.0845 17 8 -1.7533 -9.1305 1.2264 18 6 -3.4994 -7.4146 0.6218 19 6 -4.0935 -7.5981 1.8564 20 6 -5.3611 -7.1008 2.0944 21 6 -6.0388 -6.4286 1.0945 22 6 -5.4470 -6.2500 -0.1420 23 6 -4.1772 -6.7427 -0.3782 24 6 0.7184 -7.0298 0.6462 25 6 2.8658 -2.0019 3.5024 26 9 3.3217 -2.6299 4.6083 27 6 3.1052 -0.6514 3.3229 28 6 2.6399 -0.0090 2.1912 29 1 -0.3933 0.4418 -0.7650 30 1 1.7922 -0.5138 -0.8901 31 1 1.5878 2.4586 -1.2242 32 1 1.5616 2.4678 1.2085 33 1 1.1406 -2.6035 0.6393 34 1 0.8759 -4.3865 0.9911 35 1 -1.0492 -5.7705 2.7888 36 1 -0.6492 -7.5423 2.8305 37 1 -3.5655 -8.1265 2.6365 38 1 -5.8237 -7.2407 3.0602 39 1 -7.0307 -6.0433 1.2791 40 1 -5.9765 -5.7251 -0.9233 41 1 -3.7150 -6.6035 -1.3443 42 1 0.9298 -8.0969 0.7144 43 1 1.1920 -6.5576 -0.2145 44 1 3.6574 -0.0981 4.0682 45 1 2.8298 1.0454 2.0556 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:53:52 Heat of formation + Delta-G solvation = -83.774997 kcal Electronic energy + Delta-G solvation = -33714.798939 eV Core-core repulsion = 28900.176936 eV Total energy + Delta-G solvation = -4814.622003 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.097 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -50.01940 -41.65251 -40.37637 -40.06988 -39.23054 -38.23866 -37.58959 -37.09442 -34.75419 -32.63913 -32.35025 -32.27854 -32.03245 -27.28055 -27.03924 -26.59563 -25.32732 -24.19543 -23.74777 -23.19077 -21.70754 -21.10345 -19.93679 -19.31409 -18.99487 -18.61661 -18.42372 -17.86815 -17.77697 -17.04190 -16.99930 -16.89358 -16.85838 -16.40005 -16.01252 -15.92433 -15.72941 -15.62945 -15.55337 -15.29578 -14.59360 -14.52707 -14.48315 -14.26094 -14.07207 -14.04055 -13.88834 -13.81875 -13.77902 -13.33261 -13.26910 -13.25280 -13.14004 -12.77834 -12.43618 -12.25297 -12.17108 -12.03468 -11.82525 -11.78421 -11.30094 -11.18934 -10.51459 -10.46252 -10.38928 -10.19098 -10.07708 -9.82763 -4.88970 -1.02060 -0.51862 -0.20730 -0.03472 0.26405 1.30234 1.55057 1.63303 1.74228 1.84134 1.98985 2.39935 2.43088 2.69317 2.87431 3.03515 3.04538 3.26462 3.34453 3.36745 3.49334 3.58589 3.73747 3.77978 3.84836 3.91920 4.01980 4.06834 4.11995 4.33945 4.35079 4.38094 4.42487 4.46545 4.50236 4.59446 4.66559 4.67880 4.76617 4.78604 4.79762 4.86855 4.92078 4.93057 5.04933 5.15966 5.23913 5.33351 5.36128 5.57886 5.82922 6.29888 6.60538 6.99532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.077 4.077 3 Si 0.753 3.247 4 C -0.095 4.095 5 C -0.024 4.024 6 C -0.188 4.188 7 C 0.561 3.439 8 O -0.565 6.565 9 N -0.691 5.691 10 C 0.128 3.872 11 H 0.104 0.896 12 C -0.127 4.127 13 C -0.576 4.576 14 H 0.187 0.813 15 S 2.503 3.497 16 O -0.969 6.969 17 O -0.966 6.966 18 C -0.667 4.667 19 C -0.041 4.041 20 C -0.150 4.150 21 C -0.071 4.071 22 C -0.147 4.147 23 C -0.041 4.041 24 C -0.116 4.116 25 C 0.135 3.865 26 F -0.135 7.135 27 C -0.153 4.153 28 C -0.055 4.055 29 H 0.398 0.602 30 H 0.111 0.889 31 H -0.288 1.288 32 H -0.295 1.295 33 H 0.163 0.837 34 H 0.417 0.583 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.167 0.833 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 8.334 -5.544 10.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.186 4.186 3 Si 0.659 3.341 4 C -0.096 4.096 5 C -0.043 4.043 6 C -0.192 4.192 7 C 0.349 3.651 8 O -0.444 6.444 9 N -0.344 5.344 10 C 0.021 3.979 11 H 0.122 0.878 12 C -0.167 4.167 13 C -0.688 4.688 14 H 0.204 0.796 15 S 2.689 3.311 16 O -0.967 6.967 17 O -0.963 6.963 18 C -0.754 4.754 19 C -0.060 4.060 20 C -0.168 4.168 21 C -0.089 4.089 22 C -0.166 4.166 23 C -0.060 4.060 24 C -0.155 4.155 25 C 0.114 3.886 26 F -0.113 7.113 27 C -0.171 4.171 28 C -0.072 4.072 29 H 0.249 0.751 30 H 0.129 0.871 31 H -0.216 1.216 32 H -0.223 1.223 33 H 0.181 0.819 34 H 0.256 0.744 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.168 0.832 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.184 0.816 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.036 7.553 -4.615 8.852 hybrid contribution -1.768 0.489 -0.093 1.837 sum -1.804 8.043 -4.708 9.493 Atomic orbital electron populations 1.86531 1.17997 1.80639 1.51404 1.24850 0.84429 1.11237 0.98090 0.94227 0.90418 0.72746 0.76740 1.19474 0.99631 0.93708 0.96755 1.21226 0.94429 0.94144 0.94475 1.20005 1.07008 0.93812 0.98399 1.18242 0.77604 0.86537 0.82738 1.90858 1.52477 1.70735 1.30327 1.45351 1.55829 1.09300 1.23929 1.21694 0.97058 0.80920 0.98220 0.87823 1.23308 0.97269 1.05411 0.90701 1.31670 1.10095 1.19260 1.07823 0.79575 1.05071 0.75406 0.76970 0.73657 1.93532 1.86643 1.85373 1.31111 1.93541 1.86320 1.50143 1.66274 1.30459 1.24460 1.17815 1.02674 1.21203 0.95848 0.94043 0.94888 1.21673 0.95063 0.98956 1.01126 1.21916 1.00369 0.93874 0.92730 1.21686 0.95488 1.00906 0.98492 1.21239 0.95230 0.91783 0.97775 1.23217 0.89328 1.03237 0.99750 1.18172 0.95541 0.91629 0.83216 1.91565 1.86296 1.82856 1.50631 1.21353 1.03430 0.91591 1.00765 1.21365 0.93850 1.00841 0.91187 0.75065 0.87139 1.21554 1.22284 0.81910 0.74372 0.88426 0.86586 0.83675 0.83216 0.82863 0.82836 0.83194 0.86630 0.85865 0.81562 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 3.31 12.81 -148.98 -1.91 1.40 16 2 C -0.08 0.66 2.79 71.24 0.20 0.86 16 3 Si 0.75 -6.01 29.84 68.60 2.05 -3.96 16 4 C -0.10 0.49 5.38 -19.90 -0.11 0.38 16 5 C -0.02 0.11 9.17 22.52 0.21 0.31 16 6 C -0.19 -0.38 5.88 -20.05 -0.12 -0.50 16 7 C 0.56 2.79 7.77 86.74 0.67 3.47 16 8 O -0.56 -8.16 14.94 -3.93 -0.06 -8.22 16 9 N -0.69 2.27 5.21 -443.04 -2.31 -0.04 16 10 C 0.13 -0.37 4.32 45.52 0.20 -0.17 16 11 H 0.10 0.12 7.46 -2.39 -0.02 0.10 16 12 C -0.13 0.52 7.44 31.12 0.23 0.76 16 13 C -0.58 3.82 4.19 31.12 0.13 3.95 16 14 H 0.19 -2.44 8.14 -2.39 -0.02 -2.46 16 15 S 2.50 3.96 5.12 -56.49 -0.29 3.67 16 16 O -0.97 -7.51 17.13 -127.65 -2.19 -9.70 16 17 O -0.97 -7.70 16.35 -127.65 -2.09 -9.78 16 18 C -0.67 -1.15 5.66 22.27 0.13 -1.03 16 19 C -0.04 -0.06 9.47 22.27 0.21 0.15 16 20 C -0.15 0.12 10.05 22.27 0.22 0.34 16 21 C -0.07 0.16 10.05 22.27 0.22 0.39 16 22 C -0.15 0.27 10.05 22.27 0.22 0.49 16 23 C -0.04 -0.01 9.47 22.27 0.21 0.20 16 24 C -0.12 0.81 7.42 31.12 0.23 1.04 16 25 C 0.13 0.62 7.29 22.67 0.17 0.79 16 26 F -0.14 -1.53 15.55 44.97 0.70 -0.83 16 27 C -0.15 0.27 10.01 22.28 0.22 0.49 16 28 C -0.05 0.27 8.66 22.31 0.19 0.47 16 29 H 0.40 -5.22 8.74 -74.06 -0.65 -5.87 16 30 H 0.11 -1.53 7.96 -2.38 -0.02 -1.54 16 31 H -0.29 0.79 7.11 99.48 0.71 1.50 16 32 H -0.30 0.21 7.04 99.48 0.70 0.91 16 33 H 0.16 -1.75 6.41 -2.91 -0.02 -1.77 16 34 H 0.42 -4.27 6.73 -92.71 -0.62 -4.89 16 35 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.12 -0.41 7.47 -2.39 -0.02 -0.43 16 37 H 0.15 -0.06 7.57 -2.91 -0.02 -0.08 16 38 H 0.15 -0.75 8.06 -2.91 -0.02 -0.77 16 39 H 0.15 -1.13 8.06 -2.91 -0.02 -1.15 16 40 H 0.15 -1.03 8.06 -2.91 -0.02 -1.05 16 41 H 0.15 -0.38 7.57 -2.91 -0.02 -0.41 16 42 H 0.12 -0.84 8.10 -2.38 -0.02 -0.86 16 43 H 0.12 -1.39 8.14 -2.39 -0.02 -1.41 16 44 H 0.17 -0.97 8.06 -2.91 -0.02 -0.99 16 45 H 0.16 -1.50 4.84 -2.91 -0.01 -1.52 16 Total: 0.00 -35.42 395.66 -2.82 -38.23 By element: Atomic # 1 Polarization: -22.98 SS G_CDS: -0.17 Total: -23.15 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 3.44 Total: 12.38 kcal Atomic # 7 Polarization: 2.27 SS G_CDS: -2.31 Total: -0.04 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -6.24 Total: -26.30 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.70 Total: -0.83 kcal Atomic # 14 Polarization: -6.01 SS G_CDS: 2.05 Total: -3.96 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -0.29 Total: 3.67 kcal Total: -35.42 -2.82 -38.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.543 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds