Wall clock time and date at job start Sat Mar 6 2021 17:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86304 * 109.47154 * 2 1 4 4 C 1.50697 * 109.47231 * 120.00145 * 2 1 3 5 5 C 1.38236 * 120.00043 * 65.00325 * 4 2 1 6 6 C 1.38234 * 120.00047 * 180.02562 * 5 4 2 7 7 C 1.38232 * 120.00012 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99993 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47107 * 90.00133 * 8 7 6 10 10 O 1.21283 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00010 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99816 * 180.02562 * 11 9 8 13 13 H 1.08998 * 112.90832 * 23.75052 * 12 11 9 14 14 C 1.53784 * 113.61199 * 155.00230 * 12 11 9 15 15 C 1.53781 * 87.08378 * 89.11415 * 14 12 11 16 16 H 1.08993 * 113.61148 * 270.80128 * 15 14 12 17 17 S 1.81403 * 113.61561 * 139.97655 * 15 14 12 18 18 O 1.42097 * 110.53776 * 73.37780 * 17 15 14 19 19 O 1.42095 * 110.54231 * 296.62871 * 17 15 14 20 20 C 1.76199 * 104.44778 * 185.00038 * 17 15 14 21 21 C 1.38234 * 120.00037 * 90.00567 * 20 17 15 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 17 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99899 * 359.95697 * 23 22 21 25 25 C 1.38234 * 120.00205 * 0.02562 * 24 23 22 26 26 C 1.53785 * 113.61051 * 252.49734 * 12 11 9 27 27 C 1.38234 * 119.99928 * 0.25977 * 7 6 5 28 28 C 1.38232 * 120.00015 * 245.01897 * 4 2 1 29 29 H 0.96695 * 113.99826 * 59.99855 * 1 2 3 30 30 H 1.09003 * 109.46671 * 240.00554 * 2 1 3 31 31 H 1.48501 * 109.99518 * 60.00017 * 3 2 1 32 32 H 1.48497 * 110.00135 * 181.31951 * 3 2 1 33 33 H 1.08008 * 119.99794 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.99753 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.46993 * 330.00243 * 8 7 6 36 36 H 1.08996 * 109.47446 * 210.00440 * 8 7 6 37 37 H 0.96995 * 120.00318 * 359.97438 * 11 9 8 38 38 H 1.08997 * 113.61620 * 334.56018 * 14 12 11 39 39 H 1.09006 * 113.68626 * 203.67282 * 14 12 11 40 40 H 1.08000 * 119.99516 * 0.24733 * 21 20 17 41 41 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00371 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.00043 * 179.97438 * 24 23 22 44 44 H 1.08005 * 120.00199 * 179.97438 * 25 24 23 45 45 H 1.09000 * 113.60956 * 156.34313 * 26 12 11 46 46 H 1.08994 * 113.61797 * 25.43308 * 26 12 11 47 47 H 1.08002 * 120.00245 * 179.72277 * 27 7 6 48 48 H 1.07997 * 120.00264 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6849 -2.0602 1.3983 6 6 2.1452 -2.7118 2.5272 7 6 2.8526 -2.0137 3.4880 8 6 3.3539 -2.7238 4.7189 9 6 4.7352 -3.2669 4.4580 10 8 5.2610 -3.0938 3.3788 11 7 5.3867 -3.9440 5.4242 12 6 6.7298 -4.4714 5.1706 13 1 7.2533 -3.9362 4.3785 14 6 7.5687 -4.6592 6.4458 15 6 6.9722 -6.0738 6.5355 16 1 6.0400 -6.1196 7.0984 17 16 8.1691 -7.3358 7.0508 18 8 8.4618 -7.2094 8.4355 19 8 9.2090 -7.4584 6.0902 20 6 7.2850 -8.8552 6.9305 21 6 7.2998 -9.5718 5.7485 22 6 6.6067 -10.7641 5.6543 23 6 5.8992 -11.2401 6.7423 24 6 5.8856 -10.5242 7.9247 25 6 6.5790 -9.3321 8.0191 26 6 6.7713 -6.0006 5.0126 27 6 3.0949 -0.6628 3.3224 28 6 2.6385 -0.0122 2.1914 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 -0.8901 31 1 1.5615 2.4678 1.2085 32 1 3.5346 1.7703 -0.0321 33 1 1.1318 -2.6056 0.6477 34 1 1.9522 -3.7662 2.6584 35 1 2.6808 -3.5454 4.9639 36 1 3.3905 -2.0232 5.5531 37 1 4.9667 -4.0815 6.2876 38 1 7.2692 -4.0062 7.2655 39 1 8.6441 -4.6493 6.2679 40 1 7.8566 -9.2022 4.9000 41 1 6.6180 -11.3236 4.7306 42 1 5.3573 -12.1714 6.6686 43 1 5.3325 -10.8959 8.7746 44 1 6.5680 -8.7726 8.9429 45 1 7.6285 -6.3573 4.4416 46 1 5.8282 -6.4305 4.6754 47 1 3.6437 -0.1164 4.0752 48 1 2.8305 1.0424 2.0606 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12550010_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:53:59 Heat of formation + Delta-G solvation = -43.981941 kcal Electronic energy + Delta-G solvation = -32287.849378 eV Core-core repulsion = 27788.869289 eV Total energy + Delta-G solvation = -4498.980090 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.122 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.56561 -40.56830 -40.17104 -39.31761 -38.13705 -37.58577 -36.98657 -34.56444 -34.04807 -32.43113 -32.12863 -31.97450 -30.00068 -27.27779 -27.12090 -25.53785 -24.26345 -23.86374 -23.83990 -22.52072 -21.45781 -21.16031 -19.97493 -19.19083 -18.53384 -18.39403 -17.82281 -17.62905 -17.18718 -17.09442 -16.96432 -16.88743 -16.34644 -15.98661 -15.94893 -15.66149 -15.49690 -15.07397 -14.93576 -14.72783 -14.63975 -14.42494 -14.36033 -14.15475 -14.01045 -13.92759 -13.74980 -13.50803 -13.33221 -13.16711 -13.10156 -13.02200 -12.96609 -12.36940 -12.33443 -12.21559 -12.18554 -11.95703 -11.84531 -11.82153 -11.31918 -11.02051 -10.48037 -10.32339 -10.29317 -10.15221 -9.87732 -9.62169 -4.96338 -1.05333 -0.26526 0.18670 0.21582 0.45032 1.29412 1.49376 1.65787 1.71629 1.90169 1.98940 2.32011 2.60485 2.70604 2.77483 2.94670 3.27940 3.33611 3.40033 3.52401 3.54333 3.73209 3.74301 3.79535 3.81035 3.89674 3.90287 3.99450 4.13892 4.19381 4.21231 4.22363 4.29603 4.31122 4.38681 4.40485 4.45187 4.47925 4.57001 4.58747 4.66027 4.71440 4.80863 4.95913 4.96115 5.04462 5.12674 5.26189 5.28830 5.35600 5.53167 5.55123 5.71611 5.96919 6.28797 6.61921 7.08202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.072 4.072 3 Si 0.682 3.318 4 C -0.073 4.073 5 C -0.088 4.088 6 C -0.102 4.102 7 C -0.065 4.065 8 C -0.102 4.102 9 C 0.518 3.482 10 O -0.521 6.521 11 N -0.717 5.717 12 C 0.135 3.865 13 H 0.117 0.883 14 C -0.118 4.118 15 C -0.603 4.603 16 H 0.155 0.845 17 S 2.499 3.501 18 O -0.934 6.934 19 O -0.930 6.930 20 C -0.658 4.658 21 C -0.023 4.023 22 C -0.140 4.140 23 C -0.065 4.065 24 C -0.140 4.140 25 C -0.026 4.026 26 C -0.124 4.124 27 C -0.098 4.098 28 C -0.121 4.121 29 H 0.382 0.618 30 H 0.074 0.926 31 H -0.251 1.251 32 H -0.255 1.255 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.403 0.597 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.141 0.859 45 H 0.115 0.885 46 H 0.092 0.908 47 H 0.124 0.876 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.441 -0.071 -0.633 5.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.183 4.183 3 Si 0.584 3.416 4 C -0.073 4.073 5 C -0.106 4.106 6 C -0.120 4.120 7 C -0.066 4.066 8 C -0.142 4.142 9 C 0.304 3.696 10 O -0.395 6.395 11 N -0.369 5.369 12 C 0.028 3.972 13 H 0.135 0.865 14 C -0.158 4.158 15 C -0.712 4.712 16 H 0.173 0.827 17 S 2.680 3.320 18 O -0.932 6.932 19 O -0.927 6.927 20 C -0.745 4.745 21 C -0.042 4.042 22 C -0.158 4.158 23 C -0.083 4.083 24 C -0.159 4.159 25 C -0.045 4.045 26 C -0.164 4.164 27 C -0.116 4.116 28 C -0.138 4.138 29 H 0.229 0.771 30 H 0.092 0.908 31 H -0.176 1.176 32 H -0.180 1.180 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.238 0.762 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.159 0.841 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.159 0.841 45 H 0.133 0.867 46 H 0.111 0.889 47 H 0.142 0.858 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.629 0.433 -0.175 3.659 hybrid contribution -1.014 -1.174 0.618 1.669 sum -4.643 -0.740 0.443 4.722 Atomic orbital electron populations 1.86488 1.17226 1.81818 1.49669 1.24694 0.85654 1.10394 0.97532 0.95427 0.80880 0.78102 0.87223 1.19336 0.98634 0.94364 0.94949 1.20953 0.98379 0.93640 0.97594 1.21011 0.97667 0.99639 0.93666 1.19224 0.98295 0.93606 0.95429 1.20681 0.93894 1.01720 0.97916 1.20621 0.87440 0.77429 0.84095 1.90774 1.68021 1.56731 1.23983 1.45670 1.17146 1.57181 1.16951 1.21641 0.83572 0.93953 0.98007 0.86524 1.23089 1.01112 0.91714 0.99855 1.31775 1.17563 1.13506 1.08370 0.82710 1.05411 0.76130 0.75518 0.74929 1.93584 1.82566 1.85887 1.31117 1.93591 1.50605 1.85384 1.63108 1.30509 1.19014 1.23463 1.01534 1.20994 0.93827 0.93743 0.95609 1.21372 0.98239 0.96683 0.99555 1.21575 0.95241 0.98705 0.92740 1.21361 1.00463 0.95517 0.98541 1.20992 0.91302 0.95614 0.96599 1.23241 1.05253 0.98176 0.89681 1.20854 0.99223 0.94046 0.97471 1.20827 0.99720 0.98843 0.94457 0.77057 0.90778 1.17584 1.17951 0.85430 0.85773 0.87508 0.87518 0.76246 0.88296 0.87154 0.84065 0.84801 0.85011 0.84826 0.84131 0.86721 0.88943 0.85792 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.39 12.81 -35.23 -0.45 -0.84 16 2 C -0.07 -0.06 2.79 36.00 0.10 0.04 16 3 Si 0.68 -0.17 29.85 -169.99 -5.07 -5.24 16 4 C -0.07 -0.24 5.38 -104.63 -0.56 -0.80 16 5 C -0.09 -0.24 9.69 -39.58 -0.38 -0.62 16 6 C -0.10 -0.19 9.70 -39.59 -0.38 -0.58 16 7 C -0.07 -0.10 4.37 -104.63 -0.46 -0.56 16 8 C -0.10 0.19 5.83 -29.04 -0.17 0.02 16 9 C 0.52 0.10 7.82 -10.99 -0.09 0.02 16 10 O -0.52 -2.51 15.64 5.56 0.09 -2.43 16 11 N -0.72 1.89 5.26 -53.01 -0.28 1.61 16 12 C 0.14 -0.26 4.32 -67.11 -0.29 -0.55 16 13 H 0.12 -0.03 7.47 -51.93 -0.39 -0.42 16 14 C -0.12 0.37 7.42 -25.92 -0.19 0.18 16 15 C -0.60 1.92 4.20 -25.91 -0.11 1.81 16 16 H 0.16 -0.89 8.14 -51.93 -0.42 -1.31 16 17 S 2.50 1.00 5.09 -107.50 -0.55 0.45 16 18 O -0.93 -3.34 17.12 -57.54 -0.99 -4.32 16 19 O -0.93 -2.95 16.44 -57.54 -0.95 -3.89 16 20 C -0.66 -0.29 5.66 -39.58 -0.22 -0.52 16 21 C -0.02 0.00 9.47 -39.58 -0.37 -0.38 16 22 C -0.14 0.09 10.05 -39.59 -0.40 -0.31 16 23 C -0.06 0.07 10.05 -39.59 -0.40 -0.33 16 24 C -0.14 0.11 10.05 -39.58 -0.40 -0.29 16 25 C -0.03 0.00 9.47 -39.58 -0.37 -0.38 16 26 C -0.12 0.32 7.44 -25.91 -0.19 0.13 16 27 C -0.10 -0.23 9.70 -39.58 -0.38 -0.62 16 28 C -0.12 -0.41 8.67 -39.58 -0.34 -0.76 16 29 H 0.38 -1.67 8.74 45.56 0.40 -1.28 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 31 H -0.25 -0.68 7.05 56.52 0.40 -0.28 16 32 H -0.25 -0.64 7.11 56.52 0.40 -0.24 16 33 H 0.13 0.18 8.06 -52.48 -0.42 -0.24 16 34 H 0.12 -0.02 8.06 -52.49 -0.42 -0.44 16 35 H 0.11 -0.44 8.09 -51.93 -0.42 -0.86 16 36 H 0.11 -0.42 8.08 -51.93 -0.42 -0.84 16 37 H 0.40 -2.24 8.70 -40.82 -0.36 -2.59 16 38 H 0.10 -0.44 8.14 -51.93 -0.42 -0.87 16 39 H 0.11 -0.38 8.10 -51.93 -0.42 -0.80 16 40 H 0.14 -0.16 7.57 -52.49 -0.40 -0.56 16 41 H 0.13 -0.36 8.06 -52.49 -0.42 -0.78 16 42 H 0.13 -0.43 8.06 -52.49 -0.42 -0.85 16 43 H 0.13 -0.38 8.06 -52.49 -0.42 -0.80 16 44 H 0.14 -0.18 7.57 -52.48 -0.40 -0.58 16 45 H 0.11 -0.29 7.53 -51.93 -0.39 -0.69 16 46 H 0.09 -0.27 8.14 -51.93 -0.42 -0.70 16 47 H 0.12 0.06 8.06 -52.49 -0.42 -0.36 16 48 H 0.12 0.34 4.87 -52.49 -0.26 0.08 16 LS Contribution 415.89 15.07 6.27 6.27 Total: 0.00 -14.74 415.89 -14.02 -28.75 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: -6.47 Total: -15.87 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -5.62 Total: -4.48 kcal Atomic # 7 Polarization: 1.89 SS G_CDS: -0.28 Total: 1.61 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -2.30 Total: -11.48 kcal Atomic # 14 Polarization: -0.17 SS G_CDS: -5.07 Total: -5.24 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -0.55 Total: 0.45 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -14.74 -14.02 -28.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.231 kcal (2) G-P(sol) polarization free energy of solvation -14.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds