Wall clock time and date at job start Sat Mar 6 2021 17:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86304 * 109.47154 * 2 1 4 4 C 1.50697 * 109.47231 * 120.00145 * 2 1 3 5 5 C 1.38236 * 120.00043 * 65.00325 * 4 2 1 6 6 C 1.38234 * 120.00047 * 180.02562 * 5 4 2 7 7 C 1.38232 * 120.00012 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99993 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47107 * 90.00133 * 8 7 6 10 10 O 1.21283 * 120.00038 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00010 * 179.97438 * 9 8 7 12 12 C 1.46505 * 119.99816 * 180.02562 * 11 9 8 13 13 H 1.08998 * 112.90832 * 23.75052 * 12 11 9 14 14 C 1.53784 * 113.61199 * 155.00230 * 12 11 9 15 15 C 1.53781 * 87.08378 * 89.11415 * 14 12 11 16 16 H 1.08993 * 113.61148 * 270.80128 * 15 14 12 17 17 S 1.81403 * 113.61561 * 139.97655 * 15 14 12 18 18 O 1.42097 * 110.53776 * 73.37780 * 17 15 14 19 19 O 1.42095 * 110.54231 * 296.62871 * 17 15 14 20 20 C 1.76199 * 104.44778 * 185.00038 * 17 15 14 21 21 C 1.38234 * 120.00037 * 90.00567 * 20 17 15 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 17 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99899 * 359.95697 * 23 22 21 25 25 C 1.38234 * 120.00205 * 0.02562 * 24 23 22 26 26 C 1.53785 * 113.61051 * 252.49734 * 12 11 9 27 27 C 1.38234 * 119.99928 * 0.25977 * 7 6 5 28 28 C 1.38232 * 120.00015 * 245.01897 * 4 2 1 29 29 H 0.96695 * 113.99826 * 59.99855 * 1 2 3 30 30 H 1.09003 * 109.46671 * 240.00554 * 2 1 3 31 31 H 1.48501 * 109.99518 * 60.00017 * 3 2 1 32 32 H 1.48497 * 110.00135 * 181.31951 * 3 2 1 33 33 H 1.08008 * 119.99794 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.99753 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.46993 * 330.00243 * 8 7 6 36 36 H 1.08996 * 109.47446 * 210.00440 * 8 7 6 37 37 H 0.96995 * 120.00318 * 359.97438 * 11 9 8 38 38 H 1.08997 * 113.61620 * 334.56018 * 14 12 11 39 39 H 1.09006 * 113.68626 * 203.67282 * 14 12 11 40 40 H 1.08000 * 119.99516 * 0.24733 * 21 20 17 41 41 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.00371 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.00043 * 179.97438 * 24 23 22 44 44 H 1.08005 * 120.00199 * 179.97438 * 25 24 23 45 45 H 1.09000 * 113.60956 * 156.34313 * 26 12 11 46 46 H 1.08994 * 113.61797 * 25.43308 * 26 12 11 47 47 H 1.08002 * 120.00245 * 179.72277 * 27 7 6 48 48 H 1.07997 * 120.00264 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6849 -2.0602 1.3983 6 6 2.1452 -2.7118 2.5272 7 6 2.8526 -2.0137 3.4880 8 6 3.3539 -2.7238 4.7189 9 6 4.7352 -3.2669 4.4580 10 8 5.2610 -3.0938 3.3788 11 7 5.3867 -3.9440 5.4242 12 6 6.7298 -4.4714 5.1706 13 1 7.2533 -3.9362 4.3785 14 6 7.5687 -4.6592 6.4458 15 6 6.9722 -6.0738 6.5355 16 1 6.0400 -6.1196 7.0984 17 16 8.1691 -7.3358 7.0508 18 8 8.4618 -7.2094 8.4355 19 8 9.2090 -7.4584 6.0902 20 6 7.2850 -8.8552 6.9305 21 6 7.2998 -9.5718 5.7485 22 6 6.6067 -10.7641 5.6543 23 6 5.8992 -11.2401 6.7423 24 6 5.8856 -10.5242 7.9247 25 6 6.5790 -9.3321 8.0191 26 6 6.7713 -6.0006 5.0126 27 6 3.0949 -0.6628 3.3224 28 6 2.6385 -0.0122 2.1914 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 -0.8901 31 1 1.5615 2.4678 1.2085 32 1 3.5346 1.7703 -0.0321 33 1 1.1318 -2.6056 0.6477 34 1 1.9522 -3.7662 2.6584 35 1 2.6808 -3.5454 4.9639 36 1 3.3905 -2.0232 5.5531 37 1 4.9667 -4.0815 6.2876 38 1 7.2692 -4.0062 7.2655 39 1 8.6441 -4.6493 6.2679 40 1 7.8566 -9.2022 4.9000 41 1 6.6180 -11.3236 4.7306 42 1 5.3573 -12.1714 6.6686 43 1 5.3325 -10.8959 8.7746 44 1 6.5680 -8.7726 8.9429 45 1 7.6285 -6.3573 4.4416 46 1 5.8282 -6.4305 4.6754 47 1 3.6437 -0.1164 4.0752 48 1 2.8305 1.0424 2.0606 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:53:57 Heat of formation + Delta-G solvation = -49.196141 kcal Electronic energy + Delta-G solvation = -32288.075483 eV Core-core repulsion = 27788.869289 eV Total energy + Delta-G solvation = -4499.206194 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.122 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.51645 -40.58438 -40.07087 -39.30540 -38.25147 -37.60160 -37.10940 -34.55184 -34.03020 -32.34019 -32.08935 -32.03150 -29.96883 -27.10797 -27.00099 -25.53161 -24.18363 -23.98581 -23.74518 -22.51014 -21.47310 -21.07081 -19.93560 -19.13890 -18.49025 -18.39712 -17.80393 -17.61967 -17.12541 -17.02035 -16.95873 -16.89078 -16.39507 -15.99996 -15.87654 -15.58744 -15.45936 -15.13684 -14.93532 -14.70271 -14.52836 -14.47162 -14.30618 -14.06853 -13.89726 -13.86508 -13.79791 -13.59209 -13.28487 -13.27066 -13.15985 -13.07293 -12.94061 -12.34863 -12.25118 -12.15652 -12.05479 -12.03020 -11.91157 -11.77896 -11.26044 -11.06838 -10.39357 -10.34485 -10.19607 -10.07531 -10.02283 -9.71303 -4.99319 -1.02790 -0.20849 0.10766 0.26528 0.30501 1.26779 1.54128 1.59930 1.74729 1.93294 2.01556 2.40176 2.63918 2.70994 2.87586 3.05926 3.33315 3.40311 3.50978 3.55791 3.70439 3.78201 3.81761 3.84651 3.91968 3.94826 3.98172 4.07410 4.23446 4.32198 4.35472 4.38393 4.43373 4.45288 4.46082 4.53170 4.54753 4.60149 4.67971 4.69644 4.79793 4.85610 4.92152 4.92808 4.95924 5.05280 5.23332 5.24364 5.36544 5.40697 5.43708 5.44943 5.83136 5.88505 6.48285 6.88065 7.20134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.079 4.079 3 Si 0.776 3.224 4 C -0.097 4.097 5 C -0.104 4.104 6 C -0.110 4.110 7 C -0.071 4.071 8 C -0.097 4.097 9 C 0.518 3.482 10 O -0.575 6.575 11 N -0.700 5.700 12 C 0.130 3.870 13 H 0.096 0.904 14 C -0.121 4.121 15 C -0.572 4.572 16 H 0.190 0.810 17 S 2.498 3.502 18 O -0.973 6.973 19 O -0.968 6.968 20 C -0.665 4.665 21 C -0.041 4.041 22 C -0.148 4.148 23 C -0.070 4.070 24 C -0.146 4.146 25 C -0.042 4.042 26 C -0.126 4.126 27 C -0.112 4.112 28 C -0.147 4.147 29 H 0.403 0.597 30 H 0.090 0.910 31 H -0.294 1.294 32 H -0.296 1.296 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.421 0.579 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.137 0.863 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.182 -0.919 0.173 7.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.189 4.189 3 Si 0.683 3.317 4 C -0.097 4.097 5 C -0.121 4.121 6 C -0.128 4.128 7 C -0.071 4.071 8 C -0.136 4.136 9 C 0.306 3.694 10 O -0.454 6.454 11 N -0.353 5.353 12 C 0.023 3.977 13 H 0.115 0.885 14 C -0.160 4.160 15 C -0.685 4.685 16 H 0.207 0.793 17 S 2.684 3.316 18 O -0.970 6.970 19 O -0.965 6.965 20 C -0.753 4.753 21 C -0.060 4.060 22 C -0.167 4.167 23 C -0.088 4.088 24 C -0.165 4.165 25 C -0.061 4.061 26 C -0.165 4.165 27 C -0.130 4.130 28 C -0.164 4.164 29 H 0.254 0.746 30 H 0.108 0.892 31 H -0.222 1.222 32 H -0.224 1.224 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.259 0.741 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.163 0.837 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.128 0.872 46 H 0.120 0.880 47 H 0.155 0.845 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.370 -0.457 0.659 5.429 hybrid contribution -0.481 -0.915 0.388 1.104 sum -5.851 -1.372 1.047 6.100 Atomic orbital electron populations 1.86434 1.17024 1.82383 1.51348 1.24807 0.85960 1.10877 0.97224 0.94550 0.77001 0.75653 0.84545 1.19713 0.99019 0.95067 0.95897 1.21196 0.98865 0.93691 0.98396 1.21360 0.97313 1.00670 0.93433 1.19593 0.97573 0.93379 0.96590 1.20764 0.92880 1.02951 0.97039 1.20968 0.87969 0.76932 0.83570 1.90764 1.69359 1.58965 1.26273 1.45513 1.16588 1.55927 1.17240 1.21585 0.83987 0.94001 0.98146 0.88542 1.23217 1.01132 0.91724 0.99913 1.31642 1.17325 1.11299 1.08202 0.79273 1.05192 0.76594 0.76157 0.73640 1.93530 1.83856 1.86612 1.32991 1.93537 1.53293 1.86177 1.63518 1.30420 1.19338 1.23571 1.01991 1.21194 0.94480 0.94429 0.95852 1.21671 0.97939 0.96493 1.00580 1.21917 0.95004 0.99449 0.92412 1.21684 1.00251 0.95165 0.99408 1.21232 0.91680 0.96351 0.96818 1.23287 1.05658 0.97670 0.89916 1.21157 0.99310 0.94964 0.97544 1.21005 1.00943 0.98916 0.95575 0.74587 0.89228 1.22211 1.22417 0.84634 0.83811 0.84520 0.84940 0.74091 0.86117 0.87233 0.83729 0.83132 0.82790 0.82856 0.83337 0.87181 0.87991 0.84495 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.78 12.81 -148.98 -1.91 -2.69 16 2 C -0.08 -0.17 2.79 71.23 0.20 0.03 16 3 Si 0.78 0.50 29.85 68.60 2.05 2.55 16 4 C -0.10 -0.75 5.38 -19.87 -0.11 -0.85 16 5 C -0.10 -0.63 9.69 22.27 0.22 -0.41 16 6 C -0.11 -0.40 9.70 22.27 0.22 -0.18 16 7 C -0.07 -0.19 4.37 -19.87 -0.09 -0.28 16 8 C -0.10 0.55 5.83 29.10 0.17 0.72 16 9 C 0.52 -0.30 7.82 87.66 0.69 0.39 16 10 O -0.58 -5.92 15.64 -3.04 -0.05 -5.97 16 11 N -0.70 4.89 5.26 -440.02 -2.32 2.58 16 12 C 0.13 -0.57 4.32 45.52 0.20 -0.37 16 13 H 0.10 0.05 7.47 -2.39 -0.02 0.03 16 14 C -0.12 0.86 7.42 31.12 0.23 1.09 16 15 C -0.57 4.23 4.20 31.12 0.13 4.36 16 16 H 0.19 -2.71 8.14 -2.39 -0.02 -2.73 16 17 S 2.50 3.93 5.09 -56.49 -0.29 3.64 16 18 O -0.97 -7.93 17.12 -127.65 -2.19 -10.11 16 19 O -0.97 -7.87 16.44 -127.65 -2.10 -9.97 16 20 C -0.67 -0.86 5.66 22.27 0.13 -0.74 16 21 C -0.04 -0.03 9.47 22.27 0.21 0.18 16 22 C -0.15 0.25 10.05 22.27 0.22 0.48 16 23 C -0.07 0.22 10.05 22.27 0.22 0.44 16 24 C -0.15 0.35 10.05 22.27 0.22 0.57 16 25 C -0.04 0.00 9.47 22.27 0.21 0.21 16 26 C -0.13 0.70 7.44 31.12 0.23 0.93 16 27 C -0.11 -0.62 9.70 22.27 0.22 -0.41 16 28 C -0.15 -1.26 8.67 22.27 0.19 -1.06 16 29 H 0.40 -3.79 8.74 -74.06 -0.65 -4.44 16 30 H 0.09 -0.12 7.96 -2.39 -0.02 -0.14 16 31 H -0.29 -2.21 7.05 99.48 0.70 -1.51 16 32 H -0.30 -2.14 7.11 99.48 0.71 -1.44 16 33 H 0.14 0.44 8.06 -2.91 -0.02 0.42 16 34 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 35 H 0.14 -1.57 8.09 -2.39 -0.02 -1.59 16 36 H 0.13 -1.41 8.08 -2.39 -0.02 -1.43 16 37 H 0.42 -5.99 8.70 -92.71 -0.81 -6.80 16 38 H 0.12 -1.35 8.14 -2.39 -0.02 -1.37 16 39 H 0.11 -0.72 8.10 -2.38 -0.02 -0.74 16 40 H 0.14 -0.15 7.57 -2.91 -0.02 -0.18 16 41 H 0.15 -0.90 8.06 -2.91 -0.02 -0.93 16 42 H 0.15 -1.27 8.06 -2.91 -0.02 -1.29 16 43 H 0.15 -1.10 8.06 -2.91 -0.02 -1.12 16 44 H 0.15 -0.39 7.57 -2.91 -0.02 -0.41 16 45 H 0.11 -0.47 7.53 -2.39 -0.02 -0.49 16 46 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 47 H 0.14 0.21 8.06 -2.91 -0.02 0.18 16 48 H 0.11 0.92 4.87 -2.91 -0.01 0.90 16 Total: 0.00 -37.40 415.89 -3.50 -40.90 By element: Atomic # 1 Polarization: -25.61 SS G_CDS: -0.42 Total: -26.03 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 3.71 Total: 5.10 kcal Atomic # 7 Polarization: 4.89 SS G_CDS: -2.32 Total: 2.58 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -6.24 Total: -28.74 kcal Atomic # 14 Polarization: 0.50 SS G_CDS: 2.05 Total: 2.55 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -0.29 Total: 3.64 kcal Total: -37.40 -3.50 -40.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.294 kcal (2) G-P(sol) polarization free energy of solvation -37.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds