Wall clock time and date at job start Sat Mar 6 2021 17:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86300 * 109.46933 * 2 1 4 4 C 1.50702 * 109.47477 * 120.00014 * 2 1 3 5 5 C 1.37941 * 119.91839 * 65.27864 * 4 2 1 6 6 C 1.39593 * 119.86941 * 180.27242 * 5 4 2 7 7 C 1.47847 * 120.14102 * 179.71900 * 6 5 4 8 8 O 1.21553 * 119.99742 * 359.73050 * 7 6 5 9 9 N 1.34776 * 120.00454 * 179.72617 * 7 6 5 10 10 C 1.46503 * 120.00464 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84232 * 23.81187 * 10 9 7 12 12 C 1.53784 * 113.61411 * 155.00178 * 10 9 7 13 13 C 1.53775 * 87.07911 * 89.20600 * 12 10 9 14 14 H 1.09002 * 113.61339 * 270.80012 * 13 12 10 15 15 S 1.81395 * 113.61487 * 139.98008 * 13 12 10 16 16 O 1.42100 * 110.54285 * 73.37572 * 15 13 12 17 17 O 1.42095 * 110.54335 * 296.62427 * 15 13 12 18 18 C 1.76203 * 104.45150 * 184.99844 * 15 13 12 19 19 C 1.38231 * 119.99891 * 269.93398 * 18 15 13 20 20 C 1.38243 * 120.00070 * 179.97438 * 19 18 15 21 21 C 1.38235 * 119.99602 * 0.07188 * 20 19 18 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00214 * 89.99713 * 18 15 13 24 24 C 1.53772 * 113.69516 * 252.54108 * 10 9 7 25 25 C 1.39544 * 119.72161 * 359.45333 * 6 5 4 26 26 C 1.38070 * 119.84182 * 0.26759 * 25 6 5 27 27 Br 1.89099 * 119.93913 * 179.97438 * 26 25 6 28 28 C 1.38365 * 119.92043 * 244.99841 * 4 2 1 29 29 H 0.96706 * 114.00193 * 299.99730 * 1 2 3 30 30 H 1.09002 * 109.47259 * 240.00328 * 2 1 3 31 31 H 1.48501 * 110.00101 * 178.68630 * 3 2 1 32 32 H 1.48498 * 110.00171 * 300.00041 * 3 2 1 33 33 H 1.08002 * 120.06547 * 0.02562 * 5 4 2 34 34 H 0.97002 * 119.99773 * 0.02562 * 9 7 6 35 35 H 1.09000 * 113.61510 * 334.65299 * 12 10 9 36 36 H 1.09001 * 113.68932 * 203.76584 * 12 10 9 37 37 H 1.08001 * 120.00367 * 0.06476 * 19 18 15 38 38 H 1.08000 * 119.99728 * 180.34119 * 20 19 18 39 39 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00371 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99751 * 0.02562 * 23 18 15 42 42 H 1.08996 * 113.61748 * 156.32011 * 24 10 9 43 43 H 1.09005 * 113.61708 * 25.41948 * 24 10 9 44 44 H 1.08004 * 120.07555 * 180.25249 * 25 6 5 45 45 H 1.07997 * 119.85896 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6893 -2.0586 1.3935 6 6 2.1503 -2.7144 2.5364 7 6 1.8888 -4.1579 2.7203 8 8 1.2672 -4.7751 1.8776 9 7 2.3399 -4.7895 3.8221 10 6 2.0804 -6.2198 4.0046 11 1 1.9027 -6.7410 3.0639 12 6 3.1041 -6.9206 4.9133 13 6 2.1905 -6.5520 6.0941 14 1 2.4138 -5.5790 6.5318 15 16 2.0426 -7.8659 7.3361 16 8 3.2375 -7.9682 8.0984 17 8 1.4324 -9.0186 6.7723 18 6 0.8484 -7.2573 8.4798 19 6 1.2536 -6.5116 9.5709 20 6 0.3166 -6.0337 10.4680 21 6 -1.0254 -6.3029 10.2747 22 6 -1.4306 -7.0495 9.1841 23 6 -0.4936 -7.5268 8.2868 24 6 1.0300 -6.5243 5.0856 25 6 2.8636 -2.0030 3.5019 26 6 3.1042 -0.6551 3.3240 27 35 4.0700 0.3117 4.6311 28 6 2.6393 -0.0100 2.1910 29 1 -0.3934 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 3.5345 1.7704 0.0320 32 1 1.5613 2.4679 -1.2085 33 1 1.1408 -2.6048 0.6404 34 1 2.8358 -4.2969 4.4947 35 1 4.0747 -6.4252 4.9409 36 1 3.1816 -7.9939 4.7396 37 1 2.3021 -6.3009 9.7218 38 1 0.6327 -5.4463 11.3174 39 1 -1.7574 -5.9299 10.9757 40 1 -2.4790 -7.2602 9.0333 41 1 -0.8101 -8.1107 7.4351 42 1 0.5392 -7.4891 4.9580 43 1 0.3260 -5.7089 5.2523 44 1 3.2264 -2.5056 4.3864 45 1 2.8296 1.0445 2.0564 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12550010_12335870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:55:00 Heat of formation + Delta-G solvation = -35.328660 kcal Electronic energy + Delta-G solvation = -32888.166099 eV Core-core repulsion = 28205.280860 eV Total energy + Delta-G solvation = -4682.885239 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 452.017 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.88603 -40.73197 -40.16464 -39.28475 -38.13866 -37.78242 -36.98858 -34.84031 -33.74445 -32.93251 -32.42381 -32.12157 -30.59845 -27.56203 -27.27649 -27.06905 -25.22599 -24.23393 -23.83322 -22.94752 -21.89201 -21.24902 -19.98568 -19.43450 -19.03079 -18.26578 -17.98522 -17.57447 -17.40672 -17.08741 -17.02798 -16.70635 -16.48882 -16.15662 -15.97644 -15.72404 -15.65549 -15.49860 -15.07198 -14.92774 -14.63306 -14.44606 -14.38795 -14.26417 -14.13956 -13.92567 -13.91552 -13.43616 -13.32561 -13.12888 -13.11063 -13.02648 -12.37467 -12.36228 -12.28817 -12.22508 -12.06635 -12.03352 -11.83940 -11.58890 -11.34529 -11.23304 -10.67505 -10.49946 -10.46108 -10.31149 -10.14498 -10.04616 -5.20309 -1.05848 -0.63845 -0.29792 -0.25931 0.19404 0.28998 1.07830 1.41792 1.48808 1.67789 1.74631 1.84691 2.31828 2.35641 2.59260 2.74978 2.93197 3.11303 3.16792 3.27202 3.31365 3.36155 3.51693 3.62615 3.71165 3.74157 3.80171 3.84007 3.90420 4.07789 4.11069 4.18183 4.20315 4.21927 4.28348 4.36041 4.38037 4.44152 4.56948 4.57722 4.60401 4.65467 4.79910 4.81508 4.95509 4.96447 5.13397 5.17167 5.26966 5.27799 5.72293 6.14843 6.39239 6.90475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.067 4.067 3 Si 0.681 3.319 4 C -0.119 4.119 5 C -0.016 4.016 6 C -0.129 4.129 7 C 0.566 3.434 8 O -0.520 6.520 9 N -0.710 5.710 10 C 0.135 3.865 11 H 0.121 0.879 12 C -0.118 4.118 13 C -0.605 4.605 14 H 0.155 0.845 15 S 2.500 3.500 16 O -0.934 6.934 17 O -0.929 6.929 18 C -0.658 4.658 19 C -0.026 4.026 20 C -0.140 4.140 21 C -0.064 4.064 22 C -0.140 4.140 23 C -0.023 4.023 24 C -0.124 4.124 25 C -0.054 4.054 26 C -0.095 4.095 27 Br -0.031 7.031 28 C -0.061 4.061 29 H 0.381 0.619 30 H 0.121 0.879 31 H -0.253 1.253 32 H -0.248 1.248 33 H 0.149 0.851 34 H 0.402 0.598 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.138 0.862 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.089 5.757 3.007 6.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.178 4.178 3 Si 0.582 3.418 4 C -0.120 4.120 5 C -0.035 4.035 6 C -0.133 4.133 7 C 0.353 3.647 8 O -0.396 6.396 9 N -0.362 5.362 10 C 0.028 3.972 11 H 0.138 0.862 12 C -0.157 4.157 13 C -0.714 4.714 14 H 0.173 0.827 15 S 2.681 3.319 16 O -0.931 6.931 17 O -0.926 6.926 18 C -0.745 4.745 19 C -0.045 4.045 20 C -0.159 4.159 21 C -0.082 4.082 22 C -0.158 4.158 23 C -0.042 4.042 24 C -0.163 4.163 25 C -0.075 4.075 26 C -0.174 4.174 27 Br 0.055 6.945 28 C -0.081 4.081 29 H 0.228 0.772 30 H 0.138 0.862 31 H -0.177 1.177 32 H -0.172 1.172 33 H 0.167 0.833 34 H 0.238 0.762 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.159 0.841 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.159 0.841 42 H 0.135 0.865 43 H 0.112 0.888 44 H 0.156 0.844 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.170 5.164 1.971 5.530 hybrid contribution -0.296 0.253 0.424 0.576 sum -0.466 5.417 2.396 5.941 Atomic orbital electron populations 1.86557 1.16506 1.81625 1.49253 1.25087 0.85680 1.10177 0.96850 0.94897 0.81387 0.77545 0.87948 1.20394 0.99742 0.94560 0.97300 1.21310 0.93489 0.93144 0.95564 1.19905 1.02959 0.93552 0.96857 1.18097 0.78812 0.86405 0.81372 1.90843 1.39351 1.66976 1.42392 1.45539 1.57897 1.09720 1.23021 1.21687 0.94786 0.81196 0.99489 0.86156 1.23095 0.98368 1.03116 0.91161 1.31796 1.07502 1.19458 1.12681 0.82715 1.05395 0.74626 0.76383 0.75530 1.93587 1.45421 1.85718 1.68362 1.93593 1.76834 1.43165 1.79036 1.30499 1.11868 1.16309 1.15858 1.20990 1.00495 0.91552 0.91454 1.21363 0.93290 1.01152 1.00065 1.21576 0.96328 0.94184 0.96159 1.21371 1.00265 0.98939 0.95265 1.20991 0.90946 0.93856 0.98360 1.23245 0.95033 1.05318 0.92702 1.21276 0.95486 0.92395 0.98318 1.21655 1.03994 0.95091 0.96669 1.96861 1.72430 1.73529 1.51695 1.21219 0.95143 0.99917 0.91787 0.77193 0.86164 1.17712 1.17210 0.83329 0.76211 0.88219 0.86929 0.84133 0.84828 0.85020 0.84798 0.84056 0.86492 0.88793 0.84420 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.53 12.83 -35.23 -0.45 0.08 16 2 C -0.07 0.11 2.80 36.01 0.10 0.21 16 3 Si 0.68 -1.55 29.79 -169.99 -5.06 -6.62 16 4 C -0.12 0.17 5.34 -104.68 -0.56 -0.39 16 5 C -0.02 0.00 9.23 -39.18 -0.36 -0.36 16 6 C -0.13 0.09 5.87 -104.97 -0.62 -0.53 16 7 C 0.57 0.24 7.77 -12.33 -0.10 0.14 16 8 O -0.52 -2.16 15.95 5.32 0.08 -2.08 16 9 N -0.71 1.76 5.22 -53.96 -0.28 1.48 16 10 C 0.14 -0.32 4.32 -67.12 -0.29 -0.61 16 11 H 0.12 -0.14 7.46 -51.93 -0.39 -0.53 16 12 C -0.12 0.42 7.42 -25.92 -0.19 0.23 16 13 C -0.61 2.12 4.20 -25.92 -0.11 2.01 16 14 H 0.15 -0.93 8.14 -51.93 -0.42 -1.35 16 15 S 2.50 0.22 5.09 -107.50 -0.55 -0.33 16 16 O -0.93 -3.07 17.12 -57.54 -0.99 -4.06 16 17 O -0.93 -2.60 16.44 -57.54 -0.95 -3.55 16 18 C -0.66 -0.12 5.66 -39.59 -0.22 -0.35 16 19 C -0.03 0.00 9.47 -39.58 -0.37 -0.37 16 20 C -0.14 0.13 10.05 -39.58 -0.40 -0.27 16 21 C -0.06 0.08 10.05 -39.59 -0.40 -0.32 16 22 C -0.14 0.12 10.05 -39.59 -0.40 -0.28 16 23 C -0.02 0.00 9.47 -39.58 -0.37 -0.37 16 24 C -0.12 0.37 7.44 -25.92 -0.19 0.18 16 25 C -0.05 0.12 9.28 -39.16 -0.36 -0.24 16 26 C -0.09 0.16 6.22 -39.58 -0.25 -0.08 16 27 Br -0.03 0.05 33.69 -68.01 -2.29 -2.24 16 28 C -0.06 0.12 8.40 -39.47 -0.33 -0.21 16 29 H 0.38 -1.89 8.70 45.56 0.40 -1.49 16 30 H 0.12 -0.15 7.96 -51.93 -0.41 -0.57 16 31 H -0.25 0.01 7.11 56.52 0.40 0.41 16 32 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 33 H 0.15 0.12 7.65 -52.49 -0.40 -0.29 16 34 H 0.40 -2.03 6.74 -40.82 -0.28 -2.30 16 35 H 0.10 -0.48 8.14 -51.93 -0.42 -0.91 16 36 H 0.11 -0.45 8.10 -51.93 -0.42 -0.87 16 37 H 0.14 -0.21 7.57 -52.49 -0.40 -0.61 16 38 H 0.13 -0.40 8.06 -52.49 -0.42 -0.82 16 39 H 0.13 -0.45 8.06 -52.49 -0.42 -0.87 16 40 H 0.13 -0.38 8.06 -52.49 -0.42 -0.80 16 41 H 0.14 -0.21 7.57 -52.49 -0.40 -0.61 16 42 H 0.12 -0.37 7.53 -51.93 -0.39 -0.77 16 43 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 44 H 0.14 -0.65 6.40 -52.48 -0.34 -0.99 16 45 H 0.14 -0.50 4.89 -52.49 -0.26 -0.75 16 LS Contribution 412.56 15.07 6.22 6.22 Total: 0.00 -12.69 412.56 -14.70 -27.39 By element: Atomic # 1 Polarization: -9.69 SS G_CDS: -5.01 Total: -14.70 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -5.42 Total: -1.59 kcal Atomic # 7 Polarization: 1.76 SS G_CDS: -0.28 Total: 1.48 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -2.30 Total: -9.60 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: -5.06 Total: -6.62 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -0.55 Total: -0.33 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -2.29 Total: -2.24 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -12.69 -14.70 -27.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_12335870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.937 kcal (2) G-P(sol) polarization free energy of solvation -12.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds