Wall clock time and date at job start Sat Mar 6 2021 17:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86300 * 109.46933 * 2 1 4 4 C 1.50702 * 109.47477 * 120.00014 * 2 1 3 5 5 C 1.37941 * 119.91839 * 65.27864 * 4 2 1 6 6 C 1.39593 * 119.86941 * 180.27242 * 5 4 2 7 7 C 1.47847 * 120.14102 * 179.71900 * 6 5 4 8 8 O 1.21553 * 119.99742 * 359.73050 * 7 6 5 9 9 N 1.34776 * 120.00454 * 179.72617 * 7 6 5 10 10 C 1.46503 * 120.00464 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84232 * 23.81187 * 10 9 7 12 12 C 1.53784 * 113.61411 * 155.00178 * 10 9 7 13 13 C 1.53775 * 87.07911 * 89.20600 * 12 10 9 14 14 H 1.09002 * 113.61339 * 270.80012 * 13 12 10 15 15 S 1.81395 * 113.61487 * 139.98008 * 13 12 10 16 16 O 1.42100 * 110.54285 * 73.37572 * 15 13 12 17 17 O 1.42095 * 110.54335 * 296.62427 * 15 13 12 18 18 C 1.76203 * 104.45150 * 184.99844 * 15 13 12 19 19 C 1.38231 * 119.99891 * 269.93398 * 18 15 13 20 20 C 1.38243 * 120.00070 * 179.97438 * 19 18 15 21 21 C 1.38235 * 119.99602 * 0.07188 * 20 19 18 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00214 * 89.99713 * 18 15 13 24 24 C 1.53772 * 113.69516 * 252.54108 * 10 9 7 25 25 C 1.39544 * 119.72161 * 359.45333 * 6 5 4 26 26 C 1.38070 * 119.84182 * 0.26759 * 25 6 5 27 27 Br 1.89099 * 119.93913 * 179.97438 * 26 25 6 28 28 C 1.38365 * 119.92043 * 244.99841 * 4 2 1 29 29 H 0.96706 * 114.00193 * 299.99730 * 1 2 3 30 30 H 1.09002 * 109.47259 * 240.00328 * 2 1 3 31 31 H 1.48501 * 110.00101 * 178.68630 * 3 2 1 32 32 H 1.48498 * 110.00171 * 300.00041 * 3 2 1 33 33 H 1.08002 * 120.06547 * 0.02562 * 5 4 2 34 34 H 0.97002 * 119.99773 * 0.02562 * 9 7 6 35 35 H 1.09000 * 113.61510 * 334.65299 * 12 10 9 36 36 H 1.09001 * 113.68932 * 203.76584 * 12 10 9 37 37 H 1.08001 * 120.00367 * 0.06476 * 19 18 15 38 38 H 1.08000 * 119.99728 * 180.34119 * 20 19 18 39 39 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.00371 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.99751 * 0.02562 * 23 18 15 42 42 H 1.08996 * 113.61748 * 156.32011 * 24 10 9 43 43 H 1.09005 * 113.61708 * 25.41948 * 24 10 9 44 44 H 1.08004 * 120.07555 * 180.25249 * 25 6 5 45 45 H 1.07997 * 119.85896 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6893 -2.0586 1.3935 6 6 2.1503 -2.7144 2.5364 7 6 1.8888 -4.1579 2.7203 8 8 1.2672 -4.7751 1.8776 9 7 2.3399 -4.7895 3.8221 10 6 2.0804 -6.2198 4.0046 11 1 1.9027 -6.7410 3.0639 12 6 3.1041 -6.9206 4.9133 13 6 2.1905 -6.5520 6.0941 14 1 2.4138 -5.5790 6.5318 15 16 2.0426 -7.8659 7.3361 16 8 3.2375 -7.9682 8.0984 17 8 1.4324 -9.0186 6.7723 18 6 0.8484 -7.2573 8.4798 19 6 1.2536 -6.5116 9.5709 20 6 0.3166 -6.0337 10.4680 21 6 -1.0254 -6.3029 10.2747 22 6 -1.4306 -7.0495 9.1841 23 6 -0.4936 -7.5268 8.2868 24 6 1.0300 -6.5243 5.0856 25 6 2.8636 -2.0030 3.5019 26 6 3.1042 -0.6551 3.3240 27 35 4.0700 0.3117 4.6311 28 6 2.6393 -0.0100 2.1910 29 1 -0.3934 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8900 31 1 3.5345 1.7704 0.0320 32 1 1.5613 2.4679 -1.2085 33 1 1.1408 -2.6048 0.6404 34 1 2.8358 -4.2969 4.4947 35 1 4.0747 -6.4252 4.9409 36 1 3.1816 -7.9939 4.7396 37 1 2.3021 -6.3009 9.7218 38 1 0.6327 -5.4463 11.3174 39 1 -1.7574 -5.9299 10.9757 40 1 -2.4790 -7.2602 9.0333 41 1 -0.8101 -8.1107 7.4351 42 1 0.5392 -7.4891 4.9580 43 1 0.3260 -5.7089 5.2523 44 1 3.2264 -2.5056 4.3864 45 1 2.8296 1.0445 2.0564 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_12335870.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:54:59 Heat of formation + Delta-G solvation = -38.202820 kcal Electronic energy + Delta-G solvation = -32888.290732 eV Core-core repulsion = 28205.280860 eV Total energy + Delta-G solvation = -4683.009872 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 452.017 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.80890 -40.58819 -40.04752 -39.24453 -38.22770 -37.67811 -37.08595 -34.79467 -33.62245 -32.80541 -32.31576 -32.00804 -30.46108 -27.43969 -27.04892 -26.93406 -25.12770 -24.13424 -23.72227 -22.82986 -21.79402 -21.14575 -19.92925 -19.33129 -18.96090 -18.19577 -17.85344 -17.48375 -17.28059 -17.00182 -16.95977 -16.58329 -16.40992 -16.11668 -15.88390 -15.65647 -15.55165 -15.40589 -14.96933 -14.84439 -14.50469 -14.35412 -14.27935 -14.16240 -14.00602 -13.80510 -13.76406 -13.29729 -13.25681 -13.24728 -13.13268 -13.02769 -12.23952 -12.22873 -12.15978 -12.03870 -11.98341 -11.94436 -11.76744 -11.48971 -11.28083 -11.20176 -10.56816 -10.42228 -10.36098 -10.16692 -10.05185 -9.91933 -5.06094 -1.00948 -0.53364 -0.18496 -0.16854 0.28872 0.43414 1.20928 1.47701 1.59196 1.75085 1.84029 1.94804 2.41817 2.44319 2.72451 2.88843 3.05708 3.26421 3.32257 3.34669 3.50876 3.55682 3.77130 3.81101 3.86300 3.87325 3.94237 3.95957 4.09540 4.19565 4.26442 4.37643 4.39930 4.43509 4.48024 4.48241 4.53872 4.67926 4.70301 4.75473 4.81129 4.84385 4.91609 4.94527 5.07423 5.08308 5.26566 5.31237 5.38580 5.38835 5.85385 6.30319 6.71751 6.98437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.074 4.074 3 Si 0.769 3.231 4 C -0.117 4.117 5 C -0.029 4.029 6 C -0.135 4.135 7 C 0.565 3.435 8 O -0.566 6.566 9 N -0.693 5.693 10 C 0.129 3.871 11 H 0.105 0.895 12 C -0.120 4.120 13 C -0.576 4.576 14 H 0.188 0.812 15 S 2.500 3.500 16 O -0.972 6.972 17 O -0.966 6.966 18 C -0.666 4.666 19 C -0.042 4.042 20 C -0.147 4.147 21 C -0.070 4.070 22 C -0.148 4.148 23 C -0.040 4.040 24 C -0.125 4.125 25 C -0.044 4.044 26 C -0.099 4.099 27 Br -0.028 7.028 28 C -0.059 4.059 29 H 0.397 0.603 30 H 0.112 0.888 31 H -0.278 1.278 32 H -0.295 1.295 33 H 0.131 0.869 34 H 0.417 0.583 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.115 0.885 43 H 0.102 0.898 44 H 0.165 0.835 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 7.333 4.478 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.183 4.183 3 Si 0.674 3.326 4 C -0.118 4.118 5 C -0.049 4.049 6 C -0.139 4.139 7 C 0.353 3.647 8 O -0.446 6.446 9 N -0.346 5.346 10 C 0.022 3.978 11 H 0.123 0.877 12 C -0.159 4.159 13 C -0.689 4.689 14 H 0.206 0.794 15 S 2.686 3.314 16 O -0.969 6.969 17 O -0.963 6.963 18 C -0.753 4.753 19 C -0.061 4.061 20 C -0.165 4.165 21 C -0.088 4.088 22 C -0.167 4.167 23 C -0.059 4.059 24 C -0.165 4.165 25 C -0.064 4.064 26 C -0.179 4.179 27 Br 0.058 6.942 28 C -0.078 4.078 29 H 0.247 0.753 30 H 0.130 0.870 31 H -0.204 1.204 32 H -0.223 1.223 33 H 0.149 0.851 34 H 0.256 0.744 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.134 0.866 43 H 0.121 0.879 44 H 0.182 0.818 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.194 6.699 3.529 7.574 hybrid contribution -0.433 -0.193 -0.073 0.480 sum -0.240 6.505 3.456 7.370 Atomic orbital electron populations 1.86518 1.16817 1.82135 1.50552 1.25220 0.85622 1.10889 0.96615 0.93920 0.78324 0.74806 0.85536 1.20326 0.99946 0.94047 0.97497 1.21271 0.94091 0.93742 0.95752 1.19821 1.03798 0.93043 0.97270 1.18293 0.78228 0.86767 0.81371 1.90823 1.41664 1.67944 1.44119 1.45411 1.57001 1.09677 1.22463 1.21682 0.95776 0.81167 0.99143 0.87653 1.23234 0.99091 1.03544 0.90044 1.31676 1.07542 1.18927 1.10751 0.79418 1.05149 0.73670 0.76882 0.75722 1.93533 1.46819 1.86778 1.69790 1.93540 1.77192 1.46064 1.79545 1.30426 1.11866 1.16775 1.16276 1.21229 1.01270 0.91908 0.91666 1.21682 0.93391 1.01060 1.00407 1.21912 0.96822 0.93758 0.96327 1.21671 1.01071 0.98752 0.95209 1.21199 0.91192 0.94425 0.99081 1.23303 0.95240 1.05684 0.92236 1.21484 0.94253 0.92205 0.98485 1.21747 1.04041 0.95353 0.96760 1.96876 1.72349 1.73502 1.51481 1.21379 0.94413 1.00606 0.91428 0.75269 0.87030 1.20433 1.22263 0.85109 0.74422 0.86096 0.86714 0.83343 0.82904 0.82855 0.83148 0.83620 0.86634 0.87949 0.81797 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.82 12.83 -148.98 -1.91 -1.09 16 2 C -0.07 0.20 2.80 71.24 0.20 0.40 16 3 Si 0.77 -3.49 29.79 68.60 2.04 -1.44 16 4 C -0.12 0.32 5.34 -19.90 -0.11 0.21 16 5 C -0.03 -0.01 9.23 22.53 0.21 0.19 16 6 C -0.14 0.21 5.87 -20.09 -0.12 0.09 16 7 C 0.57 0.63 7.77 86.79 0.67 1.31 16 8 O -0.57 -5.63 15.95 -3.88 -0.06 -5.69 16 9 N -0.69 4.09 5.22 -442.91 -2.31 1.78 16 10 C 0.13 -0.64 4.32 45.52 0.20 -0.45 16 11 H 0.11 -0.13 7.46 -2.39 -0.02 -0.15 16 12 C -0.12 0.95 7.42 31.12 0.23 1.18 16 13 C -0.58 4.56 4.20 31.12 0.13 4.69 16 14 H 0.19 -2.74 8.14 -2.39 -0.02 -2.76 16 15 S 2.50 2.27 5.09 -56.49 -0.29 1.98 16 16 O -0.97 -7.33 17.12 -127.65 -2.19 -9.51 16 17 O -0.97 -7.00 16.44 -127.65 -2.10 -9.10 16 18 C -0.67 -0.54 5.66 22.27 0.13 -0.41 16 19 C -0.04 0.02 9.47 22.27 0.21 0.23 16 20 C -0.15 0.39 10.05 22.27 0.22 0.61 16 21 C -0.07 0.23 10.05 22.27 0.22 0.46 16 22 C -0.15 0.30 10.05 22.27 0.22 0.52 16 23 C -0.04 -0.01 9.47 22.27 0.21 0.20 16 24 C -0.13 0.79 7.44 31.12 0.23 1.02 16 25 C -0.04 0.27 9.28 22.54 0.21 0.48 16 26 C -0.10 0.49 6.22 22.27 0.14 0.63 16 27 Br -0.03 0.14 33.69 -20.37 -0.69 -0.55 16 28 C -0.06 0.29 8.40 22.34 0.19 0.48 16 29 H 0.40 -3.98 8.70 -74.05 -0.64 -4.62 16 30 H 0.11 -0.14 7.96 -2.39 -0.02 -0.16 16 31 H -0.28 0.08 7.11 99.48 0.71 0.79 16 32 H -0.29 -1.00 7.11 99.48 0.71 -0.29 16 33 H 0.13 0.51 7.65 -2.91 -0.02 0.49 16 34 H 0.42 -5.16 6.74 -92.71 -0.62 -5.78 16 35 H 0.12 -1.43 8.14 -2.39 -0.02 -1.45 16 36 H 0.11 -0.91 8.10 -2.39 -0.02 -0.93 16 37 H 0.15 -0.44 7.57 -2.91 -0.02 -0.46 16 38 H 0.15 -1.12 8.06 -2.91 -0.02 -1.14 16 39 H 0.15 -1.28 8.06 -2.91 -0.02 -1.31 16 40 H 0.15 -0.94 8.06 -2.91 -0.02 -0.97 16 41 H 0.15 -0.26 7.57 -2.91 -0.02 -0.28 16 42 H 0.12 -0.65 7.53 -2.39 -0.02 -0.67 16 43 H 0.10 -0.78 8.14 -2.38 -0.02 -0.80 16 44 H 0.16 -2.00 6.40 -2.91 -0.02 -2.01 16 45 H 0.16 -1.31 4.89 -2.91 -0.01 -1.32 16 Total: 0.00 -31.35 412.56 -4.25 -35.60 By element: Atomic # 1 Polarization: -23.66 SS G_CDS: -0.16 Total: -23.82 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 3.40 Total: 11.84 kcal Atomic # 7 Polarization: 4.09 SS G_CDS: -2.31 Total: 1.78 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -6.26 Total: -25.39 kcal Atomic # 14 Polarization: -3.49 SS G_CDS: 2.04 Total: -1.44 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -0.29 Total: 1.98 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -0.69 Total: -0.55 kcal Total: -31.35 -4.25 -35.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_12335870.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.600 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds