Wall clock time and date at job start Sat Mar 6 2021 17:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35654 * 117.00226 * 2 1 4 4 C 1.40139 * 120.15334 * 179.97438 * 3 2 1 5 5 C 1.47539 * 120.18854 * 359.97438 * 4 3 2 6 6 O 1.21583 * 119.99933 * 359.71954 * 5 4 3 7 7 N 1.34782 * 119.99513 * 179.72218 * 5 4 3 8 8 C 1.46498 * 119.99457 * 179.97438 * 7 5 4 9 9 H 1.09006 * 112.85342 * 23.80323 * 8 7 5 10 10 C 1.53785 * 113.61396 * 154.99979 * 8 7 5 11 11 C 1.53778 * 87.07879 * 89.11263 * 10 8 7 12 12 H 1.08998 * 113.61922 * 270.80144 * 11 10 8 13 13 S 1.81407 * 113.61073 * 139.98062 * 11 10 8 14 14 O 1.42099 * 110.54176 * 74.90949 * 13 11 10 15 15 O 1.42100 * 110.54264 * 298.15611 * 13 11 10 16 16 C 1.76201 * 104.44792 * 186.53241 * 13 11 10 17 17 C 1.38235 * 120.00139 * 90.00143 * 16 13 11 18 18 C 1.38230 * 119.99899 * 180.02562 * 17 16 13 19 19 C 1.38235 * 120.00326 * 359.95697 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99635 * 270.02112 * 16 13 11 22 22 C 1.53781 * 87.17517 * 25.39329 * 11 10 8 23 23 C 1.39707 * 119.61962 * 179.71840 * 4 3 2 24 24 C 1.37796 * 119.90651 * 0.25305 * 23 4 3 25 25 C 1.50698 * 119.84803 * 180.02562 * 24 23 4 26 26 O 1.42896 * 109.46878 * 65.00712 * 25 24 23 27 27 Si 1.86300 * 109.46771 * 185.00177 * 25 24 23 28 28 C 1.38548 * 120.29605 * 0.02562 * 24 23 4 29 29 C 1.38046 * 120.39617 * 359.97438 * 28 24 23 30 30 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47209 * 300.00307 * 1 2 3 32 32 H 1.09002 * 109.46936 * 60.00323 * 1 2 3 33 33 H 0.96992 * 119.99923 * 359.97438 * 7 5 4 34 34 H 1.09002 * 113.61314 * 334.56864 * 10 8 7 35 35 H 1.08997 * 113.68936 * 203.67644 * 10 8 7 36 36 H 1.08001 * 119.99730 * 359.97438 * 17 16 13 37 37 H 1.08000 * 120.00376 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 39 39 H 1.08001 * 120.00279 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.00441 * 0.02562 * 21 16 13 41 41 H 1.08998 * 113.61748 * 89.15200 * 22 11 10 42 42 H 1.08998 * 113.61810 * 220.05644 * 22 11 10 43 43 H 1.07997 * 120.04889 * 180.27316 * 23 4 3 44 44 H 1.08998 * 109.47319 * 304.99951 * 25 24 23 45 45 H 0.96696 * 114.00779 * 59.99568 * 26 25 24 46 46 H 1.48503 * 110.00218 * 58.68484 * 27 25 24 47 47 H 1.48497 * 110.00049 * 179.97438 * 27 25 24 48 48 H 1.08008 * 119.79857 * 180.02562 * 28 24 23 49 49 H 1.07998 * 119.96291 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2550 0.0531 0.0017 6 8 3.7094 -1.0334 0.0073 7 7 5.6005 0.1317 -0.0035 8 6 6.4056 -1.0922 -0.0018 9 1 5.8691 -1.9525 -0.4020 10 6 7.8089 -0.9072 -0.6030 11 6 8.2798 -0.5318 0.8119 12 1 8.1945 0.5322 1.0327 13 16 9.9059 -1.2120 1.2409 14 8 10.9375 -0.4931 0.5789 15 8 9.8734 -2.6325 1.2204 16 6 10.1170 -0.8067 2.9426 17 6 9.6849 -1.6830 3.9206 18 6 9.8500 -1.3647 5.2556 19 6 10.4480 -0.1707 5.6127 20 6 10.8814 0.7049 4.6348 21 6 10.7143 0.3877 3.2997 22 6 7.1031 -1.3674 1.3429 23 6 4.0668 2.5363 -0.0054 24 6 3.3038 3.6837 -0.0065 25 6 3.9768 5.0320 -0.0136 26 8 4.6943 5.1998 -1.2379 27 14 2.6891 6.3696 0.1398 28 6 1.9206 3.6033 -0.0012 29 6 1.2925 2.3740 0.0047 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 6.0356 0.9986 -0.0083 34 1 7.8733 -0.0859 -1.3168 35 1 8.2494 -1.8305 -0.9792 36 1 9.2175 -2.6158 3.6415 37 1 9.5121 -2.0491 6.0197 38 1 10.5730 0.0800 6.6558 39 1 11.3490 1.6376 4.9137 40 1 11.0513 1.0726 2.5357 41 1 7.3491 -2.4175 1.5002 42 1 6.5985 -0.9172 2.1977 43 1 5.1447 2.6037 -0.0095 44 1 4.6695 5.0967 0.8255 45 1 4.1396 5.1537 -2.0285 46 1 1.9146 6.1877 1.3937 47 1 3.3400 7.7043 0.1347 48 1 1.3304 4.5078 -0.0025 49 1 0.2139 2.3195 0.0084 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12550010_12496546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:55:28 Heat of formation + Delta-G solvation = -71.074047 kcal Electronic energy + Delta-G solvation = -35779.772223 eV Core-core repulsion = 30960.935139 eV Total energy + Delta-G solvation = -4818.837084 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -41.91060 -40.87657 -40.12899 -39.28609 -39.05775 -38.07102 -37.23190 -36.92920 -34.51284 -32.56268 -32.38176 -32.08724 -31.92378 -28.70413 -27.25125 -27.12425 -26.28734 -25.13846 -24.20976 -23.79890 -22.89513 -21.66349 -21.07996 -19.92114 -19.58772 -19.08060 -18.52915 -18.33065 -17.77699 -17.39121 -17.03903 -16.97462 -16.90242 -16.74154 -16.31758 -16.03315 -15.97373 -15.86040 -15.76293 -15.57752 -15.36717 -14.75634 -14.64572 -14.59851 -14.45128 -14.24867 -14.07329 -13.95303 -13.85220 -13.77069 -13.47130 -13.28599 -13.24740 -13.06842 -12.96807 -12.50998 -12.32837 -12.24805 -12.24544 -12.14690 -12.11266 -11.91193 -11.77608 -11.25089 -10.95175 -10.51401 -10.43455 -10.33295 -10.14638 -10.10779 -9.36692 -5.16536 -0.99493 -0.34577 -0.22065 0.10852 0.22826 1.16014 1.50829 1.73881 1.78537 1.86402 1.95859 2.14366 2.36644 2.61549 2.68450 2.83367 3.01207 3.29561 3.33462 3.38830 3.46032 3.52344 3.57922 3.61826 3.78379 3.83557 3.86450 3.93303 3.97781 4.12641 4.14454 4.24583 4.25163 4.26801 4.30731 4.35728 4.38919 4.44060 4.51671 4.54597 4.58741 4.61142 4.66942 4.75799 4.82699 4.85008 4.98705 5.00222 5.14866 5.16563 5.30009 5.38733 5.42013 5.75708 6.20101 6.42255 6.44241 7.21918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.279 6.279 3 C 0.194 3.806 4 C -0.176 4.176 5 C 0.566 3.434 6 O -0.510 6.510 7 N -0.715 5.715 8 C 0.139 3.861 9 H 0.119 0.881 10 C -0.119 4.119 11 C -0.603 4.603 12 H 0.154 0.846 13 S 2.500 3.500 14 O -0.935 6.935 15 O -0.930 6.930 16 C -0.658 4.658 17 C -0.022 4.022 18 C -0.140 4.140 19 C -0.065 4.065 20 C -0.140 4.140 21 C -0.026 4.026 22 C -0.124 4.124 23 C -0.020 4.020 24 C -0.169 4.169 25 C -0.062 4.062 26 O -0.540 6.540 27 Si 0.683 3.317 28 C -0.045 4.045 29 C -0.213 4.213 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.400 0.600 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.134 0.866 44 H 0.114 0.886 45 H 0.380 0.620 46 H -0.257 1.257 47 H -0.253 1.253 48 H 0.134 0.866 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 4.802 0.610 7.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.189 6.189 3 C 0.145 3.855 4 C -0.180 4.180 5 C 0.353 3.647 6 O -0.384 6.384 7 N -0.368 5.368 8 C 0.032 3.968 9 H 0.137 0.863 10 C -0.158 4.158 11 C -0.712 4.712 12 H 0.172 0.828 13 S 2.681 3.319 14 O -0.932 6.932 15 O -0.927 6.927 16 C -0.745 4.745 17 C -0.041 4.041 18 C -0.159 4.159 19 C -0.083 4.083 20 C -0.159 4.159 21 C -0.045 4.045 22 C -0.164 4.164 23 C -0.039 4.039 24 C -0.169 4.169 25 C -0.173 4.173 26 O -0.346 6.346 27 Si 0.585 3.415 28 C -0.062 4.062 29 C -0.232 4.232 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.236 0.764 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.111 0.889 43 H 0.152 0.848 44 H 0.131 0.869 45 H 0.228 0.772 46 H -0.182 1.182 47 H -0.178 1.178 48 H 0.152 0.848 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.184 4.085 0.995 6.674 hybrid contribution 0.053 0.844 1.161 1.437 sum -5.131 4.929 2.157 7.434 Atomic orbital electron populations 1.23247 0.78068 1.04846 1.01488 1.86379 1.21301 1.25139 1.86108 1.19085 0.90894 0.85115 0.90360 1.19278 0.90886 0.93723 1.14091 1.17945 0.81588 0.88786 0.76339 1.90859 1.71354 1.28538 1.47697 1.45545 1.05820 1.08914 1.76538 1.21653 0.90575 0.89093 0.95508 0.86322 1.23100 0.96032 1.04247 0.92422 1.31774 1.19590 1.12363 1.07517 0.82799 1.05406 0.76741 0.75356 0.74431 1.93583 1.52034 1.74425 1.73129 1.93590 1.86578 1.26549 1.85958 1.30521 1.14999 1.04797 1.24136 1.20991 0.93320 0.97225 0.92594 1.21366 1.00493 0.97629 0.96391 1.21568 0.93407 0.93262 1.00087 1.21358 1.01164 1.00535 0.92861 1.20992 0.92254 0.93758 0.97484 1.23278 0.93064 1.00456 0.99599 1.20962 0.99825 0.89896 0.93188 1.20128 0.93563 0.96050 1.07200 1.24956 1.03188 0.98984 0.90179 1.86505 1.37948 1.95130 1.14979 0.94831 0.81213 0.77755 0.87667 1.20986 0.93607 0.97293 0.94347 1.21247 1.00822 0.91537 1.09600 0.87595 0.92322 0.92189 0.76433 0.88260 0.87030 0.84044 0.84830 0.85063 0.84869 0.84131 0.86708 0.88935 0.84792 0.86867 0.77240 1.18176 1.17769 0.84828 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.28 -0.73 8.57 -40.54 -0.35 -1.08 16 3 C 0.19 0.27 6.70 -38.69 -0.26 0.01 16 4 C -0.18 -0.21 5.89 -104.84 -0.62 -0.82 16 5 C 0.57 1.38 7.76 -12.47 -0.10 1.29 16 6 O -0.51 -3.16 14.76 -16.59 -0.24 -3.40 16 7 N -0.72 0.56 5.21 -53.96 -0.28 0.28 16 8 C 0.14 -0.14 4.33 -67.03 -0.29 -0.43 16 9 H 0.12 0.03 7.46 -51.93 -0.39 -0.35 16 10 C -0.12 0.29 7.42 -25.92 -0.19 0.09 16 11 C -0.60 1.45 4.19 -25.92 -0.11 1.34 16 12 H 0.15 -0.72 8.14 -51.93 -0.42 -1.15 16 13 S 2.50 2.18 5.07 -107.50 -0.55 1.64 16 14 O -0.93 -3.77 17.13 -57.54 -0.99 -4.76 16 15 O -0.93 -3.24 16.49 -57.54 -0.95 -4.19 16 16 C -0.66 -0.62 5.66 -39.58 -0.22 -0.84 16 17 C -0.02 -0.01 9.47 -39.59 -0.37 -0.39 16 18 C -0.14 0.03 10.05 -39.59 -0.40 -0.37 16 19 C -0.07 0.04 10.05 -39.58 -0.40 -0.36 16 20 C -0.14 0.03 10.05 -39.58 -0.40 -0.37 16 21 C -0.03 -0.02 9.47 -39.58 -0.37 -0.39 16 22 C -0.12 0.23 7.45 -25.83 -0.19 0.03 16 23 C -0.02 0.02 9.16 -39.19 -0.36 -0.34 16 24 C -0.17 0.28 5.35 -104.67 -0.56 -0.28 16 25 C -0.06 0.13 2.79 36.00 0.10 0.23 16 26 O -0.54 0.91 12.83 -35.23 -0.45 0.46 16 27 Si 0.68 -1.73 29.78 -169.99 -5.06 -6.79 16 28 C -0.04 0.09 8.65 -39.54 -0.34 -0.25 16 29 C -0.21 0.25 9.03 -39.48 -0.36 -0.10 16 30 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 31 H 0.06 -0.17 7.65 -51.93 -0.40 -0.57 16 32 H 0.06 -0.19 7.67 -51.93 -0.40 -0.59 16 33 H 0.40 -1.30 6.73 -40.82 -0.27 -1.57 16 34 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16 35 H 0.11 -0.33 8.10 -51.93 -0.42 -0.75 16 36 H 0.14 -0.11 7.57 -52.49 -0.40 -0.51 16 37 H 0.13 -0.30 8.06 -52.49 -0.42 -0.72 16 38 H 0.13 -0.36 8.06 -52.49 -0.42 -0.78 16 39 H 0.13 -0.31 8.06 -52.49 -0.42 -0.73 16 40 H 0.14 -0.10 7.57 -52.49 -0.40 -0.50 16 41 H 0.11 -0.25 7.57 -51.93 -0.39 -0.64 16 42 H 0.09 -0.18 8.14 -51.93 -0.42 -0.61 16 43 H 0.13 -0.40 6.40 -52.49 -0.34 -0.74 16 44 H 0.11 -0.22 7.96 -51.93 -0.41 -0.63 16 45 H 0.38 -2.00 8.70 45.56 0.40 -1.61 16 46 H -0.26 0.04 7.11 56.52 0.40 0.44 16 47 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 48 H 0.13 -0.58 4.88 -52.48 -0.26 -0.84 16 49 H 0.14 -0.48 6.30 -52.49 -0.33 -0.81 16 LS Contribution 418.65 15.07 6.31 6.31 Total: 0.00 -14.32 418.65 -13.17 -27.49 By element: Atomic # 1 Polarization: -8.80 SS G_CDS: -6.16 Total: -14.97 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -4.45 Total: -0.98 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -0.28 Total: 0.28 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -2.98 Total: -12.98 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: -5.06 Total: -6.79 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -0.55 Total: 1.64 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -14.32 -13.17 -27.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_12496546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.586 kcal (2) G-P(sol) polarization free energy of solvation -14.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds