Wall clock time and date at job start Sat Mar 6 2021 17:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35654 * 117.00226 * 2 1 4 4 C 1.40139 * 120.15334 * 179.97438 * 3 2 1 5 5 C 1.47539 * 120.18854 * 359.97438 * 4 3 2 6 6 O 1.21583 * 119.99933 * 359.71954 * 5 4 3 7 7 N 1.34782 * 119.99513 * 179.72218 * 5 4 3 8 8 C 1.46498 * 119.99457 * 179.97438 * 7 5 4 9 9 H 1.09006 * 112.85342 * 23.80323 * 8 7 5 10 10 C 1.53785 * 113.61396 * 154.99979 * 8 7 5 11 11 C 1.53778 * 87.07879 * 89.11263 * 10 8 7 12 12 H 1.08998 * 113.61922 * 270.80144 * 11 10 8 13 13 S 1.81407 * 113.61073 * 139.98062 * 11 10 8 14 14 O 1.42099 * 110.54176 * 74.90949 * 13 11 10 15 15 O 1.42100 * 110.54264 * 298.15611 * 13 11 10 16 16 C 1.76201 * 104.44792 * 186.53241 * 13 11 10 17 17 C 1.38235 * 120.00139 * 90.00143 * 16 13 11 18 18 C 1.38230 * 119.99899 * 180.02562 * 17 16 13 19 19 C 1.38235 * 120.00326 * 359.95697 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99635 * 270.02112 * 16 13 11 22 22 C 1.53781 * 87.17517 * 25.39329 * 11 10 8 23 23 C 1.39707 * 119.61962 * 179.71840 * 4 3 2 24 24 C 1.37796 * 119.90651 * 0.25305 * 23 4 3 25 25 C 1.50698 * 119.84803 * 180.02562 * 24 23 4 26 26 O 1.42896 * 109.46878 * 65.00712 * 25 24 23 27 27 Si 1.86300 * 109.46771 * 185.00177 * 25 24 23 28 28 C 1.38548 * 120.29605 * 0.02562 * 24 23 4 29 29 C 1.38046 * 120.39617 * 359.97438 * 28 24 23 30 30 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47209 * 300.00307 * 1 2 3 32 32 H 1.09002 * 109.46936 * 60.00323 * 1 2 3 33 33 H 0.96992 * 119.99923 * 359.97438 * 7 5 4 34 34 H 1.09002 * 113.61314 * 334.56864 * 10 8 7 35 35 H 1.08997 * 113.68936 * 203.67644 * 10 8 7 36 36 H 1.08001 * 119.99730 * 359.97438 * 17 16 13 37 37 H 1.08000 * 120.00376 * 179.97438 * 18 17 16 38 38 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 39 39 H 1.08001 * 120.00279 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.00441 * 0.02562 * 21 16 13 41 41 H 1.08998 * 113.61748 * 89.15200 * 22 11 10 42 42 H 1.08998 * 113.61810 * 220.05644 * 22 11 10 43 43 H 1.07997 * 120.04889 * 180.27316 * 23 4 3 44 44 H 1.08998 * 109.47319 * 304.99951 * 25 24 23 45 45 H 0.96696 * 114.00779 * 59.99568 * 26 25 24 46 46 H 1.48503 * 110.00218 * 58.68484 * 27 25 24 47 47 H 1.48497 * 110.00049 * 179.97438 * 27 25 24 48 48 H 1.08008 * 119.79857 * 180.02562 * 28 24 23 49 49 H 1.07998 * 119.96291 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2550 0.0531 0.0017 6 8 3.7094 -1.0334 0.0073 7 7 5.6005 0.1317 -0.0035 8 6 6.4056 -1.0922 -0.0018 9 1 5.8691 -1.9525 -0.4020 10 6 7.8089 -0.9072 -0.6030 11 6 8.2798 -0.5318 0.8119 12 1 8.1945 0.5322 1.0327 13 16 9.9059 -1.2120 1.2409 14 8 10.9375 -0.4931 0.5789 15 8 9.8734 -2.6325 1.2204 16 6 10.1170 -0.8067 2.9426 17 6 9.6849 -1.6830 3.9206 18 6 9.8500 -1.3647 5.2556 19 6 10.4480 -0.1707 5.6127 20 6 10.8814 0.7049 4.6348 21 6 10.7143 0.3877 3.2997 22 6 7.1031 -1.3674 1.3429 23 6 4.0668 2.5363 -0.0054 24 6 3.3038 3.6837 -0.0065 25 6 3.9768 5.0320 -0.0136 26 8 4.6943 5.1998 -1.2379 27 14 2.6891 6.3696 0.1398 28 6 1.9206 3.6033 -0.0012 29 6 1.2925 2.3740 0.0047 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 6.0356 0.9986 -0.0083 34 1 7.8733 -0.0859 -1.3168 35 1 8.2494 -1.8305 -0.9792 36 1 9.2175 -2.6158 3.6415 37 1 9.5121 -2.0491 6.0197 38 1 10.5730 0.0800 6.6558 39 1 11.3490 1.6376 4.9137 40 1 11.0513 1.0726 2.5357 41 1 7.3491 -2.4175 1.5002 42 1 6.5985 -0.9172 2.1977 43 1 5.1447 2.6037 -0.0095 44 1 4.6695 5.0967 0.8255 45 1 4.1396 5.1537 -2.0285 46 1 1.9146 6.1877 1.3937 47 1 3.3400 7.7043 0.1347 48 1 1.3304 4.5078 -0.0025 49 1 0.2139 2.3195 0.0084 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_12496546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:55:26 Heat of formation + Delta-G solvation = -75.729022 kcal Electronic energy + Delta-G solvation = -35779.974078 eV Core-core repulsion = 30960.935139 eV Total energy + Delta-G solvation = -4819.038939 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.88376 -40.82388 -40.07495 -39.20117 -39.11118 -38.23245 -37.09976 -37.09524 -34.57473 -32.47369 -32.33505 -32.03666 -31.80301 -28.55891 -27.18482 -27.01959 -26.14374 -25.08660 -24.17447 -23.75133 -22.78967 -21.64032 -21.07203 -19.94187 -19.50984 -19.07481 -18.48684 -18.24039 -17.77431 -17.29444 -17.00813 -16.98648 -16.85478 -16.71858 -16.22542 -15.95487 -15.88837 -15.81949 -15.74140 -15.54707 -15.32059 -14.67373 -14.53489 -14.52959 -14.45589 -14.22331 -14.04116 -13.86270 -13.78252 -13.65131 -13.38752 -13.27322 -13.26416 -13.14572 -13.09900 -12.43030 -12.25702 -12.15516 -12.13135 -12.03343 -12.01741 -11.81176 -11.76526 -11.25746 -11.05114 -10.40271 -10.38216 -10.31776 -10.09422 -10.07502 -9.29473 -4.97733 -1.02428 -0.27556 -0.21038 0.21516 0.26041 1.34266 1.65555 1.71827 1.76616 1.97113 2.01482 2.26827 2.39763 2.65952 2.72423 2.87324 3.05627 3.33218 3.47123 3.52007 3.58712 3.68171 3.76682 3.78007 3.85094 3.91469 3.97871 4.06413 4.15375 4.30836 4.34698 4.37026 4.38184 4.38671 4.44201 4.47001 4.53157 4.55936 4.67428 4.67869 4.70349 4.74925 4.80038 4.86047 4.91749 4.93379 5.04716 5.11275 5.23535 5.27750 5.35657 5.42457 5.56140 5.82571 6.29103 6.46961 6.81850 7.16826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.172 3.828 4 C -0.197 4.197 5 C 0.562 3.438 6 O -0.558 6.558 7 N -0.700 5.700 8 C 0.131 3.869 9 H 0.102 0.898 10 C -0.119 4.119 11 C -0.576 4.576 12 H 0.184 0.816 13 S 2.503 3.497 14 O -0.972 6.972 15 O -0.964 6.964 16 C -0.666 4.666 17 C -0.040 4.040 18 C -0.148 4.148 19 C -0.071 4.071 20 C -0.147 4.147 21 C -0.043 4.043 22 C -0.125 4.125 23 C -0.017 4.017 24 C -0.168 4.168 25 C -0.062 4.062 26 O -0.554 6.554 27 Si 0.766 3.234 28 C -0.041 4.041 29 C -0.212 4.212 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.413 0.587 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.152 0.848 44 H 0.113 0.887 45 H 0.396 0.604 46 H -0.285 1.285 47 H -0.303 1.303 48 H 0.158 0.842 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 6.673 0.926 9.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.123 3.877 4 C -0.201 4.201 5 C 0.351 3.649 6 O -0.437 6.437 7 N -0.353 5.353 8 C 0.024 3.976 9 H 0.120 0.880 10 C -0.158 4.158 11 C -0.688 4.688 12 H 0.202 0.798 13 S 2.688 3.312 14 O -0.969 6.969 15 O -0.962 6.962 16 C -0.753 4.753 17 C -0.059 4.059 18 C -0.167 4.167 19 C -0.088 4.088 20 C -0.166 4.166 21 C -0.061 4.061 22 C -0.165 4.165 23 C -0.036 4.036 24 C -0.169 4.169 25 C -0.173 4.173 26 O -0.362 6.362 27 Si 0.673 3.327 28 C -0.058 4.058 29 C -0.231 4.231 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.252 0.748 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.166 0.834 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.169 0.831 44 H 0.130 0.870 45 H 0.246 0.754 46 H -0.212 1.212 47 H -0.231 1.231 48 H 0.175 0.825 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.701 5.946 1.289 8.338 hybrid contribution 0.198 0.341 1.096 1.165 sum -5.504 6.287 2.385 8.689 Atomic orbital electron populations 1.23446 0.76516 1.05472 1.02863 1.86333 1.23196 1.26371 1.86509 1.19421 0.91354 0.85565 0.91315 1.19361 0.91092 0.93870 1.15728 1.18266 0.82399 0.88680 0.75598 1.90826 1.72361 1.30224 1.50273 1.45424 1.04985 1.09661 1.75263 1.21662 0.90903 0.88703 0.96306 0.87967 1.23225 0.94552 1.05367 0.92698 1.31649 1.15970 1.13691 1.07499 0.79841 1.05086 0.77493 0.74428 0.74158 1.93530 1.54588 1.74739 1.74018 1.93539 1.87494 1.28722 1.86409 1.30438 1.15797 1.05282 1.23810 1.21207 0.93909 0.97593 0.93173 1.21675 1.00312 0.98257 0.96466 1.21915 0.92718 0.92923 1.01292 1.21680 1.00916 1.01425 0.92580 1.21230 0.92615 0.93941 0.98350 1.23322 0.92905 1.00836 0.99401 1.21123 1.00770 0.89180 0.92488 1.20245 0.93861 0.95999 1.06781 1.25009 1.03254 0.98711 0.90293 1.86476 1.38901 1.95069 1.15725 0.93891 0.79122 0.74149 0.85532 1.21276 0.93686 0.97852 0.92990 1.21482 1.01819 0.90916 1.08866 0.87495 0.91011 0.90637 0.74823 0.86323 0.86614 0.83568 0.83086 0.82807 0.82921 0.83396 0.86642 0.88402 0.83088 0.86955 0.75416 1.21161 1.23124 0.82482 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.31 -2.08 8.57 -68.78 -0.59 -2.67 16 3 C 0.17 0.57 6.70 22.85 0.15 0.72 16 4 C -0.20 -0.54 5.89 -20.01 -0.12 -0.66 16 5 C 0.56 3.38 7.76 86.70 0.67 4.06 16 6 O -0.56 -8.23 14.76 16.94 0.25 -7.98 16 7 N -0.70 1.04 5.21 -442.90 -2.31 -1.26 16 8 C 0.13 -0.19 4.33 45.58 0.20 0.01 16 9 H 0.10 0.25 7.46 -2.38 -0.02 0.23 16 10 C -0.12 0.60 7.42 31.12 0.23 0.83 16 11 C -0.58 2.93 4.19 31.12 0.13 3.06 16 12 H 0.18 -2.04 8.14 -2.39 -0.02 -2.06 16 13 S 2.50 6.89 5.07 -56.49 -0.29 6.61 16 14 O -0.97 -8.99 17.13 -127.65 -2.19 -11.17 16 15 O -0.96 -8.42 16.49 -127.65 -2.11 -10.53 16 16 C -0.67 -1.72 5.66 22.27 0.13 -1.60 16 17 C -0.04 -0.07 9.47 22.27 0.21 0.14 16 18 C -0.15 0.08 10.05 22.27 0.22 0.31 16 19 C -0.07 0.13 10.05 22.27 0.22 0.36 16 20 C -0.15 0.15 10.05 22.27 0.22 0.37 16 21 C -0.04 -0.06 9.47 22.27 0.21 0.15 16 22 C -0.12 0.40 7.45 31.18 0.23 0.64 16 23 C -0.02 0.05 9.16 22.52 0.21 0.26 16 24 C -0.17 0.79 5.35 -19.90 -0.11 0.69 16 25 C -0.06 0.36 2.79 71.24 0.20 0.56 16 26 O -0.55 2.78 12.83 -148.98 -1.91 0.87 16 27 Si 0.77 -4.72 29.78 68.60 2.04 -2.68 16 28 C -0.04 0.24 8.65 22.30 0.19 0.43 16 29 C -0.21 0.69 9.03 22.34 0.20 0.89 16 30 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.07 -0.43 7.65 -2.39 -0.02 -0.45 16 32 H 0.08 -0.49 7.67 -2.39 -0.02 -0.51 16 33 H 0.41 -3.11 6.73 -92.71 -0.62 -3.73 16 34 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 35 H 0.12 -0.64 8.10 -2.39 -0.02 -0.66 16 36 H 0.15 -0.03 7.57 -2.91 -0.02 -0.06 16 37 H 0.15 -0.75 8.06 -2.91 -0.02 -0.78 16 38 H 0.15 -1.09 8.06 -2.91 -0.02 -1.11 16 39 H 0.15 -0.88 8.06 -2.91 -0.02 -0.90 16 40 H 0.15 -0.16 7.57 -2.91 -0.02 -0.18 16 41 H 0.12 -0.36 7.57 -2.39 -0.02 -0.38 16 42 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.15 -1.13 6.40 -2.91 -0.02 -1.15 16 44 H 0.11 -0.60 7.96 -2.39 -0.02 -0.62 16 45 H 0.40 -4.92 8.70 -74.06 -0.64 -5.56 16 46 H -0.28 0.40 7.11 99.48 0.71 1.11 16 47 H -0.30 -0.72 7.11 99.48 0.71 -0.01 16 48 H 0.16 -1.75 4.88 -2.91 -0.01 -1.76 16 49 H 0.16 -1.33 6.30 -2.91 -0.02 -1.34 16 Total: 0.00 -35.55 418.65 -2.78 -38.32 By element: Atomic # 1 Polarization: -21.58 SS G_CDS: -0.21 Total: -21.79 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 4.52 Total: 12.28 kcal Atomic # 7 Polarization: 1.04 SS G_CDS: -2.31 Total: -1.26 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -6.54 Total: -31.48 kcal Atomic # 14 Polarization: -4.72 SS G_CDS: 2.04 Total: -2.68 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -0.29 Total: 6.61 kcal Total: -35.55 -2.78 -38.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_12496546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.406 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds