Wall clock time and date at job start Sat Mar 6 2021 17:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34653 * 124.85421 * 2 1 4 4 C 1.36773 * 108.39949 * 179.97438 * 3 2 1 5 5 C 1.47256 * 126.94617 * 180.02562 * 4 3 2 6 6 O 1.21628 * 120.00454 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99881 * 0.02562 * 5 4 3 8 8 C 1.46506 * 119.99873 * 179.97438 * 7 5 4 9 9 H 1.09002 * 112.85053 * 23.81070 * 8 7 5 10 10 C 1.53781 * 113.61132 * 155.00131 * 8 7 5 11 11 C 1.53785 * 87.08168 * 89.11771 * 10 8 7 12 12 H 1.09005 * 113.61450 * 270.88472 * 11 10 8 13 13 S 1.81391 * 113.61492 * 140.06306 * 11 10 8 14 14 O 1.42106 * 110.54512 * 296.62440 * 13 11 10 15 15 O 1.42095 * 110.54358 * 73.37935 * 13 11 10 16 16 C 1.76207 * 104.45166 * 185.00123 * 13 11 10 17 17 C 1.38237 * 119.99978 * 269.72993 * 16 13 11 18 18 C 1.38228 * 119.99824 * 179.80401 * 17 16 13 19 19 C 1.38238 * 120.00160 * 0.40071 * 18 17 16 20 20 C 1.38232 * 119.99902 * 359.85217 * 19 18 17 21 21 C 1.38232 * 119.99789 * 89.99461 * 16 13 11 22 22 C 1.53782 * 113.61543 * 252.49944 * 8 7 5 23 23 C 1.46698 * 106.11238 * 0.26770 * 4 3 2 24 24 C 1.34485 * 106.32883 * 359.56171 * 23 4 3 25 25 C 1.50702 * 125.56708 * 180.14494 * 24 23 4 26 26 O 1.42898 * 109.46990 * 210.34063 * 25 24 23 27 27 Si 1.86298 * 109.47452 * 330.34142 * 25 24 23 28 28 H 1.08996 * 109.47232 * 90.01326 * 1 2 3 29 29 H 1.08996 * 109.47626 * 210.02175 * 1 2 3 30 30 H 1.09004 * 109.46802 * 330.02174 * 1 2 3 31 31 H 1.08001 * 125.80230 * 359.96864 * 3 2 1 32 32 H 0.96995 * 120.00018 * 0.27699 * 7 5 4 33 33 H 1.09001 * 113.61611 * 203.66335 * 10 8 7 34 34 H 1.08999 * 113.61877 * 334.48763 * 10 8 7 35 35 H 1.07996 * 119.99904 * 359.97438 * 17 16 13 36 36 H 1.08001 * 120.00050 * 180.22879 * 18 17 16 37 37 H 1.08003 * 119.99907 * 179.83421 * 19 18 17 38 38 H 1.08004 * 120.00283 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.00618 * 359.97438 * 21 16 13 40 40 H 1.09002 * 113.61503 * 25.43252 * 22 8 7 41 41 H 1.08994 * 113.61294 * 156.33804 * 22 8 7 42 42 H 1.07995 * 126.82899 * 179.74068 * 23 4 3 43 43 H 1.08996 * 109.47021 * 90.34456 * 25 24 23 44 44 H 0.96705 * 114.00456 * 60.00568 * 26 25 24 45 45 H 1.48498 * 110.00007 * 180.02562 * 27 25 24 46 46 H 1.48501 * 109.99783 * 301.31897 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1050 0.0000 4 6 3.5462 0.7176 0.0006 5 6 4.7284 1.5955 0.0013 6 8 5.8447 1.1125 0.0013 7 7 4.5735 2.9343 0.0020 8 6 5.7497 3.8078 0.0033 9 1 6.6377 3.3226 -0.4019 10 6 5.4832 5.2007 -0.5915 11 6 5.0864 5.6439 0.8266 12 1 4.0300 5.4960 1.0507 13 16 5.6724 7.3052 1.2593 14 8 7.0928 7.3464 1.2680 15 8 4.9149 8.2947 0.5765 16 6 5.2216 7.5037 2.9511 17 6 3.9932 8.0456 3.2801 18 6 3.6380 8.1975 4.6073 19 6 4.5145 7.8152 5.6056 20 6 5.7450 7.2782 5.2766 21 6 6.0986 7.1225 3.9493 22 6 5.9908 4.5145 1.3477 23 6 3.5375 -0.7494 -0.0056 24 6 2.2447 -1.1198 0.0005 25 6 1.7396 -2.5397 0.0005 26 8 0.4810 -2.5976 -0.6735 27 14 2.9649 -3.6347 -0.8771 28 1 -0.3633 -0.0002 -1.0276 29 1 -0.3634 -0.8897 0.5141 30 1 -0.3633 0.8902 0.5135 31 1 1.8768 2.1240 -0.0005 32 1 3.6834 3.3196 0.0061 33 1 6.3795 5.6934 -0.9682 34 1 4.6582 5.2209 -1.3036 35 1 3.3100 8.3477 2.5002 36 1 2.6768 8.6175 4.8644 37 1 4.2380 7.9365 6.6426 38 1 6.4300 6.9799 6.0565 39 1 7.0600 6.7027 3.6923 40 1 5.5745 3.9810 2.2022 41 1 7.0258 4.8196 1.5011 42 1 4.3980 -1.4019 -0.0108 43 1 1.6175 -2.8818 1.0282 44 1 0.5145 -2.3068 -1.5952 45 1 2.4782 -5.0377 -0.8844 46 1 3.1643 -3.1595 -2.2698 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_13287730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:57:04 Heat of formation + Delta-G solvation = -21.680501 kcal Electronic energy + Delta-G solvation = -31590.204083 eV Core-core repulsion = 27154.991286 eV Total energy + Delta-G solvation = -4435.212797 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.118 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.45736 -41.01742 -40.04071 -39.09250 -38.19931 -37.87027 -37.06361 -34.42210 -33.63860 -32.30941 -32.00240 -31.35477 -27.91491 -26.99638 -26.83588 -26.01940 -24.20791 -23.74136 -23.68657 -21.15636 -21.01154 -20.60671 -19.86904 -19.21417 -18.91367 -18.04909 -17.46179 -17.03358 -16.99111 -16.92340 -16.79716 -16.71919 -15.90652 -15.80352 -15.56736 -15.46426 -15.39363 -15.35389 -14.77378 -14.49895 -14.47940 -14.19884 -14.08150 -13.99164 -13.78183 -13.72424 -13.40461 -13.23809 -13.23379 -13.18601 -13.11478 -13.07961 -12.41055 -12.22236 -12.09440 -12.00728 -11.97858 -11.73196 -11.20616 -11.02209 -10.94607 -10.36129 -10.15407 -10.04569 -9.56886 -9.20159 -4.89364 -0.98392 -0.17622 0.29483 0.74052 1.04093 1.46399 1.63039 1.78503 1.81257 2.04290 2.21607 2.43315 2.54430 2.76161 2.92016 3.11244 3.21324 3.38200 3.57261 3.61561 3.82556 3.86768 3.90427 3.95024 3.96800 4.09817 4.28500 4.38167 4.40884 4.42612 4.46747 4.51228 4.52237 4.53688 4.60556 4.70903 4.73893 4.79515 4.86812 4.88228 4.95230 4.97791 5.04687 5.08228 5.26988 5.39180 5.51854 5.67274 5.85985 5.97415 6.23373 6.35424 6.63523 7.34355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.427 5.427 3 C 0.072 3.928 4 C -0.260 4.260 5 C 0.593 3.407 6 O -0.587 6.587 7 N -0.699 5.699 8 C 0.132 3.868 9 H 0.100 0.900 10 C -0.120 4.120 11 C -0.572 4.572 12 H 0.188 0.812 13 S 2.500 3.500 14 O -0.967 6.967 15 O -0.972 6.972 16 C -0.665 4.665 17 C -0.042 4.042 18 C -0.147 4.147 19 C -0.071 4.071 20 C -0.149 4.149 21 C -0.040 4.040 22 C -0.126 4.126 23 C -0.155 4.155 24 C -0.024 4.024 25 C -0.043 4.043 26 O -0.541 6.541 27 Si 0.771 3.229 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.209 0.791 32 H 0.415 0.585 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.154 0.846 43 H 0.133 0.867 44 H 0.386 0.614 45 H -0.291 1.291 46 H -0.295 1.295 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -0.848 3.317 8.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.101 5.101 3 C -0.066 4.066 4 C -0.270 4.270 5 C 0.383 3.617 6 O -0.468 6.468 7 N -0.351 5.351 8 C 0.024 3.976 9 H 0.118 0.882 10 C -0.159 4.159 11 C -0.685 4.685 12 H 0.205 0.795 13 S 2.686 3.314 14 O -0.964 6.964 15 O -0.970 6.970 16 C -0.753 4.753 17 C -0.061 4.061 18 C -0.166 4.166 19 C -0.089 4.089 20 C -0.167 4.167 21 C -0.059 4.059 22 C -0.165 4.165 23 C -0.179 4.179 24 C -0.133 4.133 25 C -0.153 4.153 26 O -0.349 6.349 27 Si 0.676 3.324 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.226 0.774 32 H 0.252 0.748 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.172 0.828 43 H 0.150 0.850 44 H 0.235 0.765 45 H -0.218 1.218 46 H -0.222 1.222 Dipole moment (debyes) X Y Z Total from point charges -7.073 -1.324 2.721 7.693 hybrid contribution -1.377 0.385 -0.063 1.431 sum -8.450 -0.939 2.658 8.908 Atomic orbital electron populations 1.22441 0.74609 1.05916 1.04838 1.43722 1.08027 1.04700 1.53667 1.22428 0.89046 0.93204 1.01907 1.20282 0.92119 0.93869 1.20780 1.17633 0.87826 0.81935 0.74268 1.90772 1.27600 1.76034 1.52374 1.45289 1.09674 1.04610 1.75496 1.21594 0.90058 0.89722 0.96190 0.88240 1.23220 1.04928 0.95058 0.92681 1.31639 1.13134 1.16285 1.07416 0.79474 1.05156 0.74208 0.77884 0.74163 1.93540 1.29174 1.87246 1.86452 1.93527 1.73074 1.57101 1.73250 1.30436 1.04879 1.16457 1.23505 1.21225 0.93798 0.92515 0.98534 1.21676 1.01492 1.00894 0.92502 1.21911 0.93025 0.92743 1.01196 1.21673 0.97955 1.00445 0.96663 1.21204 0.98031 0.93650 0.93021 1.23297 0.99951 0.93673 0.99622 1.21827 0.95547 0.93640 1.06837 1.20834 0.90505 0.89727 1.12233 1.24699 0.92522 0.94113 1.03948 1.86561 1.29443 1.89027 1.29819 0.93385 0.84507 0.74595 0.79924 0.89538 0.88910 0.87761 0.77446 0.74755 0.86999 0.86209 0.83305 0.82891 0.82865 0.83169 0.83654 0.88212 0.86919 0.82807 0.84985 0.76477 1.21774 1.22176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.62 9.81 127.77 1.25 0.63 16 2 N -0.43 1.99 3.09 -533.24 -1.65 0.34 16 3 C 0.07 -0.40 10.83 83.92 0.91 0.51 16 4 C -0.26 -0.39 6.29 -19.04 -0.12 -0.51 16 5 C 0.59 2.62 7.81 86.61 0.68 3.29 16 6 O -0.59 -8.11 16.57 -4.12 -0.07 -8.18 16 7 N -0.70 2.68 5.25 -443.44 -2.33 0.35 16 8 C 0.13 -0.39 4.32 45.52 0.20 -0.19 16 9 H 0.10 0.15 7.46 -2.39 -0.02 0.13 16 10 C -0.12 0.79 7.42 31.12 0.23 1.02 16 11 C -0.57 3.97 4.19 31.12 0.13 4.10 16 12 H 0.19 -2.58 8.14 -2.38 -0.02 -2.60 16 13 S 2.50 3.80 5.09 -56.49 -0.29 3.51 16 14 O -0.97 -7.74 16.45 -127.65 -2.10 -9.84 16 15 O -0.97 -7.69 17.12 -127.65 -2.19 -9.87 16 16 C -0.67 -0.88 5.66 22.27 0.13 -0.75 16 17 C -0.04 0.00 9.47 22.27 0.21 0.22 16 18 C -0.15 0.35 10.05 22.27 0.22 0.57 16 19 C -0.07 0.21 10.05 22.27 0.22 0.43 16 20 C -0.15 0.22 10.05 22.27 0.22 0.44 16 21 C -0.04 -0.04 9.47 22.27 0.21 0.18 16 22 C -0.13 0.59 7.44 31.12 0.23 0.82 16 23 C -0.15 -0.37 9.49 23.62 0.22 -0.15 16 24 C -0.02 0.03 6.14 40.98 0.25 0.28 16 25 C -0.04 0.14 2.87 71.24 0.20 0.34 16 26 O -0.54 1.68 10.32 -148.98 -1.54 0.15 16 27 Si 0.77 -1.20 31.11 68.60 2.13 0.93 16 28 H 0.09 -1.02 8.14 -2.39 -0.02 -1.03 16 29 H 0.09 -0.73 6.73 -2.39 -0.02 -0.74 16 30 H 0.10 -1.46 8.13 -2.38 -0.02 -1.48 16 31 H 0.21 -3.03 7.45 -2.91 -0.02 -3.05 16 32 H 0.41 -4.66 7.64 -92.71 -0.71 -5.37 16 33 H 0.11 -0.73 8.10 -2.39 -0.02 -0.75 16 34 H 0.12 -1.27 8.14 -2.39 -0.02 -1.29 16 35 H 0.15 -0.42 7.56 -2.91 -0.02 -0.44 16 36 H 0.15 -1.10 8.06 -2.91 -0.02 -1.12 16 37 H 0.15 -1.23 8.06 -2.91 -0.02 -1.25 16 38 H 0.15 -0.86 8.06 -2.91 -0.02 -0.88 16 39 H 0.15 -0.14 7.57 -2.91 -0.02 -0.16 16 40 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H 0.11 -0.45 7.54 -2.39 -0.02 -0.46 16 42 H 0.15 0.29 6.88 -2.91 -0.02 0.27 16 43 H 0.13 -0.67 7.96 -2.39 -0.02 -0.69 16 44 H 0.39 -2.88 8.70 -74.05 -0.64 -3.53 16 45 H -0.29 -1.33 7.11 99.48 0.71 -0.63 16 46 H -0.30 -1.41 7.11 99.48 0.71 -0.70 16 Total: 0.00 -34.83 399.03 -2.89 -37.72 By element: Atomic # 1 Polarization: -26.08 SS G_CDS: -0.28 Total: -26.36 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.41 Total: 11.24 kcal Atomic # 7 Polarization: 4.66 SS G_CDS: -3.97 Total: 0.69 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -5.89 Total: -27.74 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: 2.13 Total: 0.93 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -0.29 Total: 3.51 kcal Total: -34.83 -2.89 -37.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_13287730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.044 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds