Wall clock time and date at job start Sat Mar 6 2021 17:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38981 * 119.95396 * 2 1 4 4 O 1.35715 * 119.90985 * 359.97438 * 3 2 1 5 5 C 1.39016 * 120.17975 * 179.97438 * 3 2 1 6 6 C 1.50699 * 119.95888 * 180.02562 * 5 3 2 7 7 O 1.42892 * 109.47249 * 285.00173 * 6 5 3 8 8 Si 1.86298 * 109.47032 * 164.99559 * 6 5 3 9 9 C 1.37679 * 120.08412 * 0.29222 * 5 3 2 10 10 C 1.39758 * 119.91325 * 359.44124 * 9 5 3 11 11 C 1.47606 * 120.08825 * 180.31629 * 10 9 5 12 12 O 1.21581 * 119.99811 * 0.22177 * 11 10 9 13 13 N 1.34777 * 119.99735 * 180.21979 * 11 10 9 14 14 C 1.46500 * 119.99759 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.85446 * 336.20033 * 14 13 11 16 16 C 1.53784 * 113.61298 * 107.50664 * 14 13 11 17 17 C 1.53784 * 87.08027 * 89.11393 * 16 14 13 18 18 H 1.08994 * 113.69301 * 270.87131 * 17 16 14 19 19 S 1.81397 * 113.61267 * 139.97917 * 17 16 14 20 20 O 1.42104 * 110.54406 * 194.12957 * 19 17 16 21 21 O 1.42102 * 110.54430 * 330.87949 * 19 17 16 22 22 C 1.76199 * 104.45028 * 82.50410 * 19 17 16 23 23 C 1.38240 * 120.00201 * 269.73078 * 22 19 17 24 24 C 1.38235 * 120.00159 * 179.78402 * 23 22 19 25 25 C 1.38236 * 119.99651 * 0.44064 * 24 23 22 26 26 C 1.38235 * 120.00287 * 359.81173 * 25 24 23 27 27 C 1.38231 * 119.99926 * 359.97438 * 26 25 24 28 28 C 1.53777 * 113.61286 * 205.00351 * 14 13 11 29 29 C 1.37721 * 119.96012 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47010 * 90.00795 * 1 2 3 31 31 H 1.09006 * 109.47005 * 210.00079 * 1 2 3 32 32 H 1.08993 * 109.47496 * 330.00354 * 1 2 3 33 33 H 0.96690 * 114.00098 * 269.98002 * 4 3 2 34 34 H 1.09004 * 109.46453 * 45.00242 * 6 5 3 35 35 H 0.96703 * 114.00176 * 299.99748 * 7 6 5 36 36 H 1.48506 * 109.99834 * 58.68765 * 8 6 5 37 37 H 1.48502 * 110.00011 * 180.02562 * 8 6 5 38 38 H 1.08004 * 120.04579 * 179.72715 * 9 5 3 39 39 H 0.96995 * 120.00086 * 0.02562 * 13 11 10 40 40 H 1.08994 * 113.61570 * 203.66356 * 16 14 13 41 41 H 1.09001 * 113.61270 * 334.56788 * 16 14 13 42 42 H 1.07999 * 119.99553 * 359.97438 * 23 22 19 43 43 H 1.07998 * 119.99999 * 180.27020 * 24 23 22 44 44 H 1.08003 * 120.00114 * 179.83177 * 25 24 23 45 45 H 1.08008 * 119.99968 * 180.02562 * 26 25 24 46 46 H 1.08006 * 119.99884 * 180.02562 * 27 26 25 47 47 H 1.09001 * 113.61963 * 25.43441 * 28 14 13 48 48 H 1.09003 * 113.61529 * 156.33586 * 28 14 13 49 49 H 1.07996 * 120.04478 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2009 1.2042 0.0000 4 8 1.5195 2.3779 -0.0005 5 6 3.5910 1.2096 0.0005 6 6 4.3384 2.5182 0.0011 7 8 4.2724 3.1051 -1.3001 8 14 6.1194 2.2159 0.4565 9 6 4.2859 0.0211 -0.0050 10 6 3.5918 -1.1920 0.0006 11 6 4.3329 -2.4685 0.0018 12 8 5.5487 -2.4656 0.0019 13 7 3.6618 -3.6373 0.0027 14 6 4.3973 -4.9043 0.0033 15 1 5.4045 -4.8093 -0.4024 16 6 4.3404 -5.6490 1.3476 17 6 3.0632 -6.3292 0.8271 18 1 2.1505 -5.7773 1.0514 19 16 2.9479 -8.0869 1.2605 20 8 1.9362 -8.7244 0.4929 21 8 4.2441 -8.6567 1.3815 22 6 2.3150 -8.0938 2.9048 23 6 3.1837 -8.0693 3.9800 24 6 2.6870 -8.0702 5.2700 25 6 1.3219 -8.1048 5.4850 26 6 0.4534 -8.1345 4.4100 27 6 0.9499 -8.1291 3.1199 28 6 3.6020 -6.0785 -0.5912 29 6 2.1947 -1.1932 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5137 33 1 1.3227 2.7180 -0.8840 34 1 3.8873 3.1939 0.7278 35 1 4.6564 2.5575 -1.9985 36 1 6.7370 1.2711 -0.5086 37 1 6.8673 3.4989 0.4612 38 1 5.3659 0.0261 -0.0090 39 1 2.6918 -3.6396 0.0023 40 1 5.1709 -6.3381 1.5005 41 1 4.1693 -4.9946 2.2024 42 1 4.2503 -8.0465 3.8119 43 1 3.3656 -8.0467 6.1099 44 1 0.9339 -8.1082 6.4929 45 1 -0.6132 -8.1610 4.5780 46 1 0.2713 -8.1519 2.2800 47 1 2.8347 -5.7710 -1.3017 48 1 4.2306 -6.8851 -0.9685 49 1 1.6548 -2.1285 0.0014 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12550010_13287732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:57:13 Heat of formation + Delta-G solvation = -84.280268 kcal Electronic energy + Delta-G solvation = -35482.570934 eV Core-core repulsion = 30663.161186 eV Total energy + Delta-G solvation = -4819.409748 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -41.93328 -41.04188 -40.16493 -39.45339 -38.13953 -38.00117 -37.56212 -36.98241 -34.72193 -34.07552 -32.42583 -32.12251 -31.81748 -28.18607 -27.45532 -27.24633 -26.78339 -24.84378 -24.21665 -23.83225 -22.26461 -21.79038 -21.19091 -19.97888 -19.66711 -19.30064 -18.84283 -18.25736 -17.93809 -17.49498 -17.11368 -17.02744 -16.86275 -16.53631 -16.16741 -16.12647 -16.04364 -15.80709 -15.65530 -15.54594 -15.06260 -14.82595 -14.63251 -14.55743 -14.34023 -14.20255 -14.13808 -13.98317 -13.95920 -13.88218 -13.39452 -13.32457 -13.13520 -13.12009 -13.02259 -12.88940 -12.48265 -12.36453 -12.33998 -12.19414 -11.84316 -11.78590 -11.72367 -11.32927 -11.11391 -10.64759 -10.47846 -10.36514 -10.14692 -10.10604 -9.76648 -4.97569 -1.05186 -0.49299 -0.26003 -0.03670 0.19302 1.21828 1.52192 1.58123 1.71146 1.81275 1.92728 2.32417 2.44798 2.58581 2.76791 2.93599 2.99766 3.25340 3.29292 3.32033 3.38676 3.42719 3.53404 3.57855 3.74264 3.80156 3.83610 3.90363 4.08052 4.16566 4.20273 4.21888 4.22239 4.30084 4.37710 4.41027 4.44783 4.46333 4.52785 4.57574 4.58401 4.60471 4.69374 4.81449 4.89897 4.96416 4.97085 5.00373 5.13304 5.17733 5.23893 5.26860 5.43142 5.72207 6.22797 6.28815 6.48758 6.99305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C 0.163 3.837 4 O -0.488 6.488 5 C -0.147 4.147 6 C -0.067 4.067 7 O -0.528 6.528 8 Si 0.684 3.316 9 C -0.052 4.052 10 C -0.140 4.140 11 C 0.566 3.434 12 O -0.526 6.526 13 N -0.711 5.711 14 C 0.135 3.865 15 H 0.120 0.880 16 C -0.124 4.124 17 C -0.604 4.604 18 H 0.154 0.846 19 S 2.500 3.500 20 O -0.934 6.934 21 O -0.929 6.929 22 C -0.659 4.659 23 C -0.022 4.022 24 C -0.140 4.140 25 C -0.065 4.065 26 C -0.140 4.140 27 C -0.026 4.026 28 C -0.118 4.118 29 C -0.066 4.066 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.399 0.601 34 H 0.124 0.876 35 H 0.375 0.625 36 H -0.254 1.254 37 H -0.252 1.252 38 H 0.146 0.854 39 H 0.402 0.598 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.141 0.859 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 1.571 2.048 5.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.118 4.118 3 C 0.118 3.882 4 O -0.299 6.299 5 C -0.148 4.148 6 C -0.177 4.177 7 O -0.334 6.334 8 Si 0.585 3.415 9 C -0.071 4.071 10 C -0.143 4.143 11 C 0.354 3.646 12 O -0.402 6.402 13 N -0.363 5.363 14 C 0.028 3.972 15 H 0.138 0.862 16 C -0.164 4.164 17 C -0.714 4.714 18 H 0.172 0.828 19 S 2.681 3.319 20 O -0.931 6.931 21 O -0.926 6.926 22 C -0.746 4.746 23 C -0.041 4.041 24 C -0.158 4.158 25 C -0.083 4.083 26 C -0.159 4.159 27 C -0.045 4.045 28 C -0.157 4.157 29 C -0.085 4.085 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.258 0.742 34 H 0.142 0.858 35 H 0.223 0.777 36 H -0.179 1.179 37 H -0.177 1.177 38 H 0.163 0.837 39 H 0.238 0.762 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.159 0.841 47 H 0.117 0.883 48 H 0.129 0.871 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.959 1.334 2.246 3.947 hybrid contribution -1.380 0.438 -0.847 1.678 sum -4.339 1.772 1.399 4.891 Atomic orbital electron populations 1.20742 0.89676 1.03880 1.02861 1.20214 0.97334 0.92070 1.02166 1.18320 0.88793 0.85316 0.95804 1.84659 1.75610 1.35658 1.34010 1.20578 0.93821 0.95872 1.04539 1.24907 1.10551 0.93799 0.88416 1.86615 1.82774 1.47665 1.16374 0.94698 0.74262 0.81333 0.91213 1.21171 1.00935 0.90194 0.94796 1.19746 0.93412 0.93227 1.07935 1.18146 0.87247 0.83432 0.75818 1.90829 1.13219 1.87384 1.48781 1.45534 1.10158 1.04785 1.75793 1.21683 0.97505 0.82116 0.95890 0.86224 1.23260 0.93862 0.99750 0.99479 1.31791 1.08032 1.24130 1.07426 0.82773 1.05397 0.74771 0.77272 0.74486 1.93587 1.58865 1.71644 1.69007 1.93593 1.39497 1.73795 1.85740 1.30513 1.02956 1.18618 1.22475 1.20997 0.99689 0.91556 0.91886 1.21376 0.95883 1.01319 0.97270 1.21579 0.93682 0.93376 0.99623 1.21360 1.00570 1.01432 0.92540 1.20988 0.93177 0.91942 0.98421 1.23083 1.00559 0.99588 0.92448 1.21092 0.92560 0.97815 0.96992 0.90833 0.91058 0.90301 0.74230 0.85798 0.77733 1.17918 1.17708 0.83654 0.76247 0.86417 0.88781 0.84025 0.84793 0.85024 0.84844 0.84145 0.88262 0.87104 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.35 9.78 36.00 0.35 0.70 16 2 C -0.12 0.18 5.89 -104.54 -0.62 -0.44 16 3 C 0.16 -0.07 6.66 -39.02 -0.26 -0.33 16 4 O -0.49 0.36 11.84 -18.85 -0.22 0.14 16 5 C -0.15 0.03 5.27 -104.54 -0.55 -0.52 16 6 C -0.07 0.02 2.37 36.01 0.09 0.11 16 7 O -0.53 -0.14 12.88 -35.23 -0.45 -0.59 16 8 Si 0.68 -0.20 30.25 -169.99 -5.14 -5.35 16 9 C -0.05 -0.02 8.20 -39.22 -0.32 -0.34 16 10 C -0.14 0.04 5.88 -104.96 -0.62 -0.58 16 11 C 0.57 0.38 7.76 -12.44 -0.10 0.29 16 12 O -0.53 -2.28 15.94 5.29 0.08 -2.19 16 13 N -0.71 1.70 5.21 -54.04 -0.28 1.42 16 14 C 0.13 -0.31 4.32 -67.12 -0.29 -0.60 16 15 H 0.12 -0.13 7.46 -51.93 -0.39 -0.52 16 16 C -0.12 0.37 7.44 -25.92 -0.19 0.18 16 17 C -0.60 2.17 4.20 -25.92 -0.11 2.06 16 18 H 0.15 -0.94 8.14 -51.93 -0.42 -1.37 16 19 S 2.50 -0.11 5.13 -107.50 -0.55 -0.66 16 20 O -0.93 -2.92 17.13 -57.54 -0.99 -3.91 16 21 O -0.93 -2.51 16.30 -57.54 -0.94 -3.45 16 22 C -0.66 -0.06 5.66 -39.58 -0.22 -0.28 16 23 C -0.02 0.00 9.47 -39.58 -0.37 -0.37 16 24 C -0.14 0.13 10.05 -39.58 -0.40 -0.27 16 25 C -0.06 0.08 10.05 -39.58 -0.40 -0.32 16 26 C -0.14 0.14 10.05 -39.59 -0.40 -0.26 16 27 C -0.03 0.01 9.47 -39.58 -0.37 -0.37 16 28 C -0.12 0.42 7.42 -25.92 -0.19 0.23 16 29 C -0.07 0.14 9.18 -39.22 -0.36 -0.22 16 30 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 31 H 0.07 -0.29 8.08 -51.93 -0.42 -0.71 16 32 H 0.08 -0.18 7.52 -51.93 -0.39 -0.57 16 33 H 0.40 -1.57 9.06 45.56 0.41 -1.16 16 34 H 0.12 -0.03 7.82 -51.93 -0.41 -0.44 16 35 H 0.38 -0.92 8.70 45.56 0.40 -0.52 16 36 H -0.25 -0.47 6.68 56.52 0.38 -0.09 16 37 H -0.25 -0.67 7.11 56.52 0.40 -0.26 16 38 H 0.15 0.12 4.44 -52.48 -0.23 -0.11 16 39 H 0.40 -2.04 6.72 -40.82 -0.27 -2.31 16 40 H 0.12 -0.36 7.43 -51.93 -0.39 -0.75 16 41 H 0.09 -0.31 8.14 -51.93 -0.42 -0.74 16 42 H 0.14 -0.21 7.56 -52.49 -0.40 -0.61 16 43 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 44 H 0.13 -0.45 8.06 -52.48 -0.42 -0.87 16 45 H 0.13 -0.41 8.06 -52.48 -0.42 -0.83 16 46 H 0.14 -0.23 7.57 -52.48 -0.40 -0.63 16 47 H 0.10 -0.49 8.14 -51.93 -0.42 -0.91 16 48 H 0.11 -0.45 8.10 -51.93 -0.42 -0.87 16 49 H 0.13 -0.67 6.39 -52.49 -0.34 -1.01 16 LS Contribution 421.17 15.07 6.35 6.35 Total: 0.00 -13.43 421.17 -12.90 -26.33 By element: Atomic # 1 Polarization: -11.35 SS G_CDS: -5.42 Total: -16.76 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -5.33 Total: -1.33 kcal Atomic # 7 Polarization: 1.70 SS G_CDS: -0.28 Total: 1.42 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -2.52 Total: -10.00 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: -5.14 Total: -5.35 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -0.55 Total: -0.66 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -13.43 -12.90 -26.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_13287732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.953 kcal (2) G-P(sol) polarization free energy of solvation -13.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds