Wall clock time and date at job start Sat Mar 6 2021 17:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38981 * 119.95396 * 2 1 4 4 O 1.35715 * 119.90985 * 359.97438 * 3 2 1 5 5 C 1.39016 * 120.17975 * 179.97438 * 3 2 1 6 6 C 1.50699 * 119.95888 * 180.02562 * 5 3 2 7 7 O 1.42892 * 109.47249 * 285.00173 * 6 5 3 8 8 Si 1.86298 * 109.47032 * 164.99559 * 6 5 3 9 9 C 1.37679 * 120.08412 * 0.29222 * 5 3 2 10 10 C 1.39758 * 119.91325 * 359.44124 * 9 5 3 11 11 C 1.47606 * 120.08825 * 180.31629 * 10 9 5 12 12 O 1.21581 * 119.99811 * 0.22177 * 11 10 9 13 13 N 1.34777 * 119.99735 * 180.21979 * 11 10 9 14 14 C 1.46500 * 119.99759 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.85446 * 336.20033 * 14 13 11 16 16 C 1.53784 * 113.61298 * 107.50664 * 14 13 11 17 17 C 1.53784 * 87.08027 * 89.11393 * 16 14 13 18 18 H 1.08994 * 113.69301 * 270.87131 * 17 16 14 19 19 S 1.81397 * 113.61267 * 139.97917 * 17 16 14 20 20 O 1.42104 * 110.54406 * 194.12957 * 19 17 16 21 21 O 1.42102 * 110.54430 * 330.87949 * 19 17 16 22 22 C 1.76199 * 104.45028 * 82.50410 * 19 17 16 23 23 C 1.38240 * 120.00201 * 269.73078 * 22 19 17 24 24 C 1.38235 * 120.00159 * 179.78402 * 23 22 19 25 25 C 1.38236 * 119.99651 * 0.44064 * 24 23 22 26 26 C 1.38235 * 120.00287 * 359.81173 * 25 24 23 27 27 C 1.38231 * 119.99926 * 359.97438 * 26 25 24 28 28 C 1.53777 * 113.61286 * 205.00351 * 14 13 11 29 29 C 1.37721 * 119.96012 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47010 * 90.00795 * 1 2 3 31 31 H 1.09006 * 109.47005 * 210.00079 * 1 2 3 32 32 H 1.08993 * 109.47496 * 330.00354 * 1 2 3 33 33 H 0.96690 * 114.00098 * 269.98002 * 4 3 2 34 34 H 1.09004 * 109.46453 * 45.00242 * 6 5 3 35 35 H 0.96703 * 114.00176 * 299.99748 * 7 6 5 36 36 H 1.48506 * 109.99834 * 58.68765 * 8 6 5 37 37 H 1.48502 * 110.00011 * 180.02562 * 8 6 5 38 38 H 1.08004 * 120.04579 * 179.72715 * 9 5 3 39 39 H 0.96995 * 120.00086 * 0.02562 * 13 11 10 40 40 H 1.08994 * 113.61570 * 203.66356 * 16 14 13 41 41 H 1.09001 * 113.61270 * 334.56788 * 16 14 13 42 42 H 1.07999 * 119.99553 * 359.97438 * 23 22 19 43 43 H 1.07998 * 119.99999 * 180.27020 * 24 23 22 44 44 H 1.08003 * 120.00114 * 179.83177 * 25 24 23 45 45 H 1.08008 * 119.99968 * 180.02562 * 26 25 24 46 46 H 1.08006 * 119.99884 * 180.02562 * 27 26 25 47 47 H 1.09001 * 113.61963 * 25.43441 * 28 14 13 48 48 H 1.09003 * 113.61529 * 156.33586 * 28 14 13 49 49 H 1.07996 * 120.04478 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2009 1.2042 0.0000 4 8 1.5195 2.3779 -0.0005 5 6 3.5910 1.2096 0.0005 6 6 4.3384 2.5182 0.0011 7 8 4.2724 3.1051 -1.3001 8 14 6.1194 2.2159 0.4565 9 6 4.2859 0.0211 -0.0050 10 6 3.5918 -1.1920 0.0006 11 6 4.3329 -2.4685 0.0018 12 8 5.5487 -2.4656 0.0019 13 7 3.6618 -3.6373 0.0027 14 6 4.3973 -4.9043 0.0033 15 1 5.4045 -4.8093 -0.4024 16 6 4.3404 -5.6490 1.3476 17 6 3.0632 -6.3292 0.8271 18 1 2.1505 -5.7773 1.0514 19 16 2.9479 -8.0869 1.2605 20 8 1.9362 -8.7244 0.4929 21 8 4.2441 -8.6567 1.3815 22 6 2.3150 -8.0938 2.9048 23 6 3.1837 -8.0693 3.9800 24 6 2.6870 -8.0702 5.2700 25 6 1.3219 -8.1048 5.4850 26 6 0.4534 -8.1345 4.4100 27 6 0.9499 -8.1291 3.1199 28 6 3.6020 -6.0785 -0.5912 29 6 2.1947 -1.1932 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5137 33 1 1.3227 2.7180 -0.8840 34 1 3.8873 3.1939 0.7278 35 1 4.6564 2.5575 -1.9985 36 1 6.7370 1.2711 -0.5086 37 1 6.8673 3.4989 0.4612 38 1 5.3659 0.0261 -0.0090 39 1 2.6918 -3.6396 0.0023 40 1 5.1709 -6.3381 1.5005 41 1 4.1693 -4.9946 2.2024 42 1 4.2503 -8.0465 3.8119 43 1 3.3656 -8.0467 6.1099 44 1 0.9339 -8.1082 6.4929 45 1 -0.6132 -8.1610 4.5780 46 1 0.2713 -8.1519 2.2800 47 1 2.8347 -5.7710 -1.3017 48 1 4.2306 -6.8851 -0.9685 49 1 1.6548 -2.1285 0.0014 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_13287732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:57:11 Heat of formation + Delta-G solvation = -90.346293 kcal Electronic energy + Delta-G solvation = -35482.833977 eV Core-core repulsion = 30663.161186 eV Total energy + Delta-G solvation = -4819.672791 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.85505 -40.92363 -40.03752 -39.39245 -38.21440 -37.97544 -37.48844 -37.06488 -34.66432 -33.95423 -32.30769 -31.99863 -31.71815 -27.98960 -27.34887 -27.01033 -26.69176 -24.76201 -24.10836 -23.71095 -22.15626 -21.70639 -21.07704 -19.90858 -19.56811 -19.21299 -18.77865 -18.20867 -17.86624 -17.38111 -16.99942 -16.94626 -16.78875 -16.46093 -16.12352 -16.10679 -15.97783 -15.76223 -15.58051 -15.47286 -14.98123 -14.73423 -14.49332 -14.35610 -14.21170 -14.12351 -13.99622 -13.90934 -13.79248 -13.74061 -13.31114 -13.23629 -13.22941 -13.11274 -12.91333 -12.76613 -12.48156 -12.21873 -12.13136 -12.00086 -11.91307 -11.75859 -11.64006 -11.25603 -11.13495 -10.64386 -10.36971 -10.28632 -10.04375 -9.98184 -9.65707 -5.01021 -0.98878 -0.40889 -0.17518 0.07073 0.29779 1.20670 1.51068 1.56772 1.78181 1.84462 1.92198 2.43568 2.53090 2.72638 2.91053 3.08278 3.14479 3.33336 3.38214 3.46093 3.51425 3.58177 3.69978 3.81977 3.88611 3.95346 4.01773 4.10329 4.17715 4.36898 4.38561 4.42370 4.45660 4.49701 4.50215 4.56051 4.63678 4.71213 4.71827 4.74387 4.82504 4.84338 4.88306 4.95522 5.04741 5.08396 5.08735 5.21800 5.27427 5.33602 5.38728 5.39717 5.59851 5.86266 6.38899 6.39992 6.70854 7.06979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 C 0.157 3.843 4 O -0.497 6.497 5 C -0.152 4.152 6 C -0.062 4.062 7 O -0.540 6.540 8 Si 0.744 3.256 9 C -0.065 4.065 10 C -0.150 4.150 11 C 0.564 3.436 12 O -0.572 6.572 13 N -0.693 5.693 14 C 0.129 3.871 15 H 0.104 0.896 16 C -0.126 4.126 17 C -0.575 4.575 18 H 0.189 0.811 19 S 2.500 3.500 20 O -0.971 6.971 21 O -0.967 6.967 22 C -0.666 4.666 23 C -0.040 4.040 24 C -0.149 4.149 25 C -0.071 4.071 26 C -0.147 4.147 27 C -0.042 4.042 28 C -0.119 4.119 29 C -0.053 4.053 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.412 0.588 34 H 0.126 0.874 35 H 0.386 0.614 36 H -0.287 1.287 37 H -0.293 1.293 38 H 0.133 0.867 39 H 0.418 0.582 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.150 0.850 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 1.640 2.492 7.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C 0.112 3.888 4 O -0.311 6.311 5 C -0.153 4.153 6 C -0.172 4.172 7 O -0.348 6.348 8 Si 0.650 3.350 9 C -0.084 4.084 10 C -0.153 4.153 11 C 0.353 3.647 12 O -0.452 6.452 13 N -0.345 5.345 14 C 0.022 3.978 15 H 0.122 0.878 16 C -0.166 4.166 17 C -0.687 4.687 18 H 0.207 0.793 19 S 2.686 3.314 20 O -0.969 6.969 21 O -0.964 6.964 22 C -0.753 4.753 23 C -0.059 4.059 24 C -0.167 4.167 25 C -0.089 4.089 26 C -0.166 4.166 27 C -0.060 4.060 28 C -0.158 4.158 29 C -0.072 4.072 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.272 0.728 34 H 0.143 0.857 35 H 0.235 0.765 36 H -0.214 1.214 37 H -0.221 1.221 38 H 0.150 0.850 39 H 0.257 0.743 40 H 0.133 0.867 41 H 0.121 0.879 42 H 0.164 0.836 43 H 0.168 0.832 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.167 0.833 47 H 0.140 0.860 48 H 0.131 0.869 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.507 1.337 2.690 6.273 hybrid contribution -0.589 0.464 -1.002 1.252 sum -6.097 1.801 1.688 6.577 Atomic orbital electron populations 1.20774 0.88295 1.04258 1.03596 1.20443 0.98294 0.91731 1.01525 1.18472 0.88674 0.85956 0.95735 1.84625 1.75475 1.35735 1.35240 1.20481 0.94152 0.95354 1.05292 1.24835 1.10018 0.94030 0.88302 1.86579 1.82915 1.48406 1.16872 0.93955 0.73296 0.77634 0.90088 1.21129 1.00476 0.90987 0.95793 1.19747 0.94314 0.92424 1.08804 1.18335 0.86755 0.84374 0.75213 1.90811 1.15197 1.87994 1.51183 1.45384 1.10903 1.03900 1.74363 1.21677 0.97228 0.82389 0.96535 0.87822 1.23313 0.94081 0.99681 0.99499 1.31669 1.09394 1.20271 1.07412 0.79331 1.05148 0.73390 0.78744 0.74104 1.93534 1.59560 1.73873 1.69900 1.93540 1.40777 1.75929 1.86156 1.30445 1.03331 1.19345 1.22214 1.21202 1.00096 0.92219 0.92399 1.21671 0.96639 1.00954 0.97479 1.21913 0.93552 0.92685 1.00723 1.21680 1.01770 1.00820 0.92291 1.21232 0.93206 0.92322 0.99288 1.23219 1.00971 0.98862 0.92749 1.21384 0.91588 0.99095 0.95101 0.89846 0.89447 0.91174 0.72798 0.85659 0.76524 1.21404 1.22054 0.84986 0.74337 0.86720 0.87935 0.83642 0.83194 0.82904 0.82907 0.83267 0.86042 0.86919 0.81717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.96 9.78 71.23 0.70 1.65 16 2 C -0.12 0.58 5.89 -19.81 -0.12 0.46 16 3 C 0.16 -0.25 6.66 22.63 0.15 -0.10 16 4 O -0.50 1.07 11.84 -90.37 -1.07 0.00 16 5 C -0.15 0.02 5.27 -19.81 -0.10 -0.08 16 6 C -0.06 -0.01 2.37 71.24 0.17 0.16 16 7 O -0.54 -0.58 12.88 -148.98 -1.92 -2.50 16 8 Si 0.74 0.93 30.25 68.60 2.08 3.01 16 9 C -0.07 -0.09 8.20 22.51 0.18 0.09 16 10 C -0.15 0.15 5.88 -20.08 -0.12 0.03 16 11 C 0.56 0.73 7.76 86.72 0.67 1.40 16 12 O -0.57 -5.79 15.94 -3.97 -0.06 -5.85 16 13 N -0.69 4.30 5.21 -443.14 -2.31 1.99 16 14 C 0.13 -0.67 4.32 45.52 0.20 -0.47 16 15 H 0.10 -0.13 7.46 -2.39 -0.02 -0.14 16 16 C -0.13 0.81 7.44 31.12 0.23 1.05 16 17 C -0.57 4.85 4.20 31.12 0.13 4.98 16 18 H 0.19 -2.90 8.14 -2.39 -0.02 -2.92 16 19 S 2.50 1.03 5.13 -56.49 -0.29 0.75 16 20 O -0.97 -6.74 17.13 -127.65 -2.19 -8.92 16 21 O -0.97 -6.70 16.30 -127.65 -2.08 -8.78 16 22 C -0.67 -0.26 5.66 22.27 0.13 -0.14 16 23 C -0.04 0.00 9.47 22.27 0.21 0.21 16 24 C -0.15 0.32 10.05 22.27 0.22 0.55 16 25 C -0.07 0.25 10.05 22.27 0.22 0.47 16 26 C -0.15 0.44 10.05 22.27 0.22 0.66 16 27 C -0.04 0.04 9.47 22.27 0.21 0.25 16 28 C -0.12 1.00 7.42 31.12 0.23 1.23 16 29 C -0.05 0.35 9.18 22.50 0.21 0.55 16 30 H 0.08 -0.84 8.14 -2.38 -0.02 -0.86 16 31 H 0.09 -1.00 8.08 -2.38 -0.02 -1.02 16 32 H 0.07 -0.43 7.52 -2.39 -0.02 -0.45 16 33 H 0.41 -3.49 9.06 -74.06 -0.67 -4.16 16 34 H 0.13 -0.02 7.82 -2.38 -0.02 -0.04 16 35 H 0.39 -1.58 8.70 -74.06 -0.64 -2.22 16 36 H -0.29 -1.85 6.68 99.48 0.66 -1.19 16 37 H -0.29 -2.29 7.11 99.48 0.71 -1.58 16 38 H 0.13 0.50 4.44 -2.91 -0.01 0.48 16 39 H 0.42 -5.50 6.72 -92.71 -0.62 -6.12 16 40 H 0.11 -0.62 7.43 -2.39 -0.02 -0.64 16 41 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.15 -0.27 7.56 -2.91 -0.02 -0.29 16 43 H 0.15 -0.95 8.06 -2.91 -0.02 -0.98 16 44 H 0.15 -1.30 8.06 -2.91 -0.02 -1.32 16 45 H 0.15 -1.17 8.06 -2.91 -0.02 -1.20 16 46 H 0.15 -0.54 7.57 -2.91 -0.02 -0.56 16 47 H 0.12 -1.51 8.14 -2.39 -0.02 -1.53 16 48 H 0.11 -0.94 8.10 -2.39 -0.02 -0.95 16 49 H 0.17 -2.34 6.39 -2.91 -0.02 -2.35 16 Total: 0.00 -33.21 421.17 -4.99 -38.21 By element: Atomic # 1 Polarization: -29.96 SS G_CDS: -0.90 Total: -30.86 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 3.75 Total: 12.97 kcal Atomic # 7 Polarization: 4.30 SS G_CDS: -2.31 Total: 1.99 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -7.32 Total: -26.06 kcal Atomic # 14 Polarization: 0.93 SS G_CDS: 2.08 Total: 3.01 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -0.29 Total: 0.75 kcal Total: -33.21 -4.99 -38.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_13287732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.140 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds