Wall clock time and date at job start Sat Mar 6 2021 17:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47076 * 2 1 4 4 C 1.50704 * 109.47296 * 240.00421 * 2 1 3 5 5 C 1.33744 * 125.11383 * 300.00116 * 4 2 1 6 6 C 1.37804 * 115.07932 * 179.97438 * 5 4 2 7 7 C 1.34986 * 114.69861 * 0.02562 * 6 5 4 8 8 C 1.47555 * 125.27478 * 179.97438 * 7 6 5 9 9 C 1.39824 * 119.99767 * 359.74833 * 8 7 6 10 10 C 1.36564 * 120.00101 * 179.76536 * 9 8 7 11 11 C 1.39840 * 119.99866 * 0.50912 * 10 9 8 12 12 C 1.47555 * 120.00338 * 179.76539 * 11 10 9 13 13 O 1.21595 * 119.99972 * 179.97438 * 12 11 10 14 14 N 1.34773 * 120.00133 * 359.97438 * 12 11 10 15 15 C 1.46500 * 120.00465 * 179.97438 * 14 12 11 16 16 H 1.09001 * 112.84776 * 334.66985 * 15 14 12 17 17 C 1.53777 * 113.61348 * 105.85973 * 15 14 12 18 18 C 1.54055 * 86.98391 * 89.16529 * 17 15 14 19 19 H 1.08998 * 113.61544 * 270.88381 * 18 17 15 20 20 S 1.81398 * 113.69418 * 139.98740 * 18 17 15 21 21 O 1.42101 * 110.54185 * 194.09164 * 20 18 17 22 22 O 1.42101 * 110.54658 * 330.84251 * 20 18 17 23 23 C 1.76204 * 104.45044 * 82.46642 * 20 18 17 24 24 C 1.38224 * 120.00217 * 269.72722 * 23 20 18 25 25 C 1.38234 * 120.00237 * 179.78828 * 24 23 20 26 26 C 1.38242 * 119.99663 * 0.43647 * 25 24 23 27 27 C 1.38233 * 119.99755 * 359.81734 * 26 25 24 28 28 C 1.38225 * 120.00417 * 359.97438 * 27 26 25 29 29 C 1.53775 * 113.61743 * 203.47320 * 15 14 12 30 30 C 1.39830 * 119.99308 * 359.74174 * 11 10 9 31 31 C 1.36565 * 120.00220 * 0.02562 * 30 11 10 32 32 S 1.75853 * 125.12121 * 119.97076 * 4 2 1 33 33 H 0.96697 * 114.00010 * 299.99354 * 1 2 3 34 34 H 1.08999 * 109.47107 * 120.00421 * 2 1 3 35 35 H 1.48504 * 110.00005 * 178.68037 * 3 2 1 36 36 H 1.48500 * 110.00020 * 300.00234 * 3 2 1 37 37 H 1.07997 * 122.46347 * 359.70306 * 5 4 2 38 38 H 1.07998 * 122.65025 * 179.97438 * 6 5 4 39 39 H 1.07993 * 120.00158 * 359.97438 * 9 8 7 40 40 H 1.07995 * 120.00726 * 180.25621 * 10 9 8 41 41 H 0.97008 * 119.99816 * 0.02562 * 14 12 11 42 42 H 1.09005 * 113.61293 * 203.66435 * 17 15 14 43 43 H 1.09002 * 113.61862 * 334.57632 * 17 15 14 44 44 H 1.08004 * 120.00367 * 359.97438 * 24 23 20 45 45 H 1.08000 * 120.00801 * 180.27496 * 25 24 23 46 46 H 1.08001 * 119.99815 * 179.83817 * 26 25 24 47 47 H 1.08005 * 119.99465 * 179.97438 * 27 26 25 48 48 H 1.08003 * 120.00367 * 180.02562 * 28 27 26 49 49 H 1.08995 * 113.61815 * 25.42648 * 29 15 14 50 50 H 1.08996 * 113.61992 * 156.25203 * 29 15 14 51 51 H 1.08004 * 119.99862 * 180.02562 * 30 11 10 52 52 H 1.08004 * 120.00016 * 179.97438 * 31 30 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.6721 -1.9847 -1.5429 6 6 2.2372 -2.4240 -2.7205 7 6 2.9668 -1.4968 -3.3764 8 6 3.6721 -1.7149 -4.6539 9 6 3.6183 -2.9652 -5.2776 10 6 4.2671 -3.1658 -6.4624 11 6 4.9940 -2.1238 -7.0466 12 6 5.6993 -2.3419 -8.3242 13 8 6.3310 -1.4357 -8.8324 14 7 5.6433 -3.5456 -8.9279 15 6 6.3431 -3.7620 -10.1967 16 1 6.4882 -2.8417 -10.7624 17 6 7.6196 -4.6084 -10.0595 18 6 6.7264 -5.8441 -10.2801 19 1 6.3105 -6.2523 -9.3590 20 16 7.4832 -7.1119 -11.3338 21 8 6.5083 -8.0547 -11.7580 22 8 8.3809 -6.5184 -12.2618 23 6 8.5250 -8.0244 -10.2444 24 6 9.8413 -7.6423 -10.0652 25 6 10.6574 -8.3556 -9.2072 26 6 10.1596 -9.4565 -8.5354 27 6 8.8448 -9.8417 -8.7187 28 6 8.0275 -9.1259 -9.5733 29 6 5.7606 -4.9137 -11.0328 30 6 5.0520 -0.8750 -6.4202 31 6 4.3993 -0.6732 -5.2378 32 16 2.9461 0.0117 -2.4721 33 1 -0.3933 0.4416 0.7651 34 1 1.7923 -0.5139 0.8899 35 1 3.5346 1.7703 0.0321 36 1 1.5614 2.4679 -1.2085 37 1 1.0680 -2.6238 -0.9161 38 1 2.1073 -3.4308 -3.0891 39 1 3.0609 -3.7714 -4.8240 40 1 4.2221 -4.1303 -6.9463 41 1 5.1391 -4.2684 -8.5227 42 1 8.3413 -4.4430 -10.8595 43 1 8.0685 -4.5641 -9.0672 44 1 10.2314 -6.7847 -10.5931 45 1 11.6846 -8.0545 -9.0637 46 1 10.7979 -10.0153 -7.8671 47 1 8.4560 -10.7021 -8.1941 48 1 7.0001 -9.4266 -9.7162 49 1 4.7097 -5.1155 -10.8258 50 1 5.9737 -4.8308 -12.0985 51 1 5.6131 -0.0700 -6.8716 52 1 4.4445 0.2913 -4.7538 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_13308390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:57:39 Heat of formation + Delta-G solvation = -6.874245 kcal Electronic energy + Delta-G solvation = -38084.178823 eV Core-core repulsion = 33007.517909 eV Total energy + Delta-G solvation = -5076.660914 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 456.094 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.71400 -40.45258 -40.06535 -39.41877 -38.82175 -38.24230 -37.41472 -37.09812 -34.79827 -33.45666 -32.33985 -32.28358 -32.02643 -30.63918 -27.74854 -27.05175 -26.63516 -24.73051 -24.19763 -24.01989 -23.73928 -23.40821 -21.99859 -21.14376 -20.19749 -19.93446 -19.36302 -18.94257 -18.61324 -18.37208 -17.96452 -17.24566 -17.08056 -17.00226 -16.97290 -16.36302 -16.19291 -16.14529 -15.77702 -15.67536 -15.59140 -15.52501 -15.21995 -14.99399 -14.70408 -14.53111 -14.51832 -14.36483 -14.22203 -14.16008 -14.03002 -13.88101 -13.77859 -13.43180 -13.26856 -13.26288 -13.25558 -13.16456 -13.14402 -12.69783 -12.39139 -12.24563 -12.18974 -12.17103 -12.02911 -11.84938 -11.78134 -11.30458 -11.18582 -10.88640 -10.40195 -10.37213 -10.27390 -10.25569 -10.07120 -9.73406 -9.12093 -5.27178 -1.02269 -0.98783 -0.20355 0.14529 0.25745 0.27070 0.31147 0.66980 1.15976 1.44451 1.54003 1.74511 1.86349 1.87431 1.89829 2.40688 2.67924 2.74312 2.87460 3.04919 3.29988 3.34692 3.39208 3.49254 3.62462 3.63752 3.75164 3.79089 3.81732 3.85829 3.92624 4.07822 4.11354 4.22849 4.33212 4.35896 4.37961 4.42369 4.42663 4.46619 4.47050 4.51529 4.56184 4.67977 4.68520 4.79983 4.83748 4.84521 4.91934 4.92800 5.01662 5.05690 5.13386 5.19279 5.23762 5.24779 5.35410 5.36985 5.39854 5.64892 5.83633 6.36281 6.83235 7.03961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.035 4.035 3 Si 0.747 3.253 4 C -0.187 4.187 5 C -0.103 4.103 6 C -0.112 4.112 7 C -0.153 4.153 8 C 0.005 3.995 9 C -0.106 4.106 10 C -0.064 4.064 11 C -0.148 4.148 12 C 0.563 3.437 13 O -0.574 6.574 14 N -0.692 5.692 15 C 0.128 3.872 16 H 0.102 0.898 17 C -0.126 4.126 18 C -0.575 4.575 19 H 0.189 0.811 20 S 2.499 3.501 21 O -0.970 6.970 22 O -0.967 6.967 23 C -0.667 4.667 24 C -0.041 4.041 25 C -0.149 4.149 26 C -0.070 4.070 27 C -0.146 4.146 28 C -0.042 4.042 29 C -0.118 4.118 30 C -0.062 4.062 31 C -0.134 4.134 32 S 0.056 5.944 33 H 0.407 0.593 34 H 0.112 0.888 35 H -0.273 1.273 36 H -0.286 1.286 37 H 0.166 0.834 38 H 0.178 0.822 39 H 0.165 0.835 40 H 0.170 0.830 41 H 0.418 0.582 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.145 0.855 45 H 0.150 0.850 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.150 0.850 49 H 0.123 0.877 50 H 0.114 0.886 51 H 0.129 0.871 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 -3.649 10.615 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.148 4.148 3 Si 0.652 3.348 4 C -0.304 4.304 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.269 4.269 8 C 0.003 3.997 9 C -0.125 4.125 10 C -0.083 4.083 11 C -0.152 4.152 12 C 0.352 3.648 13 O -0.454 6.454 14 N -0.345 5.345 15 C 0.021 3.979 16 H 0.120 0.880 17 C -0.166 4.166 18 C -0.687 4.687 19 H 0.207 0.793 20 S 2.685 3.315 21 O -0.968 6.968 22 O -0.964 6.964 23 C -0.754 4.754 24 C -0.060 4.060 25 C -0.168 4.168 26 C -0.088 4.088 27 C -0.165 4.165 28 C -0.060 4.060 29 C -0.157 4.157 30 C -0.081 4.081 31 C -0.152 4.152 32 S 0.322 5.678 33 H 0.259 0.741 34 H 0.129 0.871 35 H -0.199 1.199 36 H -0.213 1.213 37 H 0.183 0.817 38 H 0.195 0.805 39 H 0.182 0.818 40 H 0.187 0.813 41 H 0.258 0.742 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.163 0.837 45 H 0.168 0.832 46 H 0.172 0.828 47 H 0.172 0.828 48 H 0.168 0.832 49 H 0.141 0.859 50 H 0.132 0.868 51 H 0.147 0.853 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.719 -1.470 8.199 8.505 hybrid contribution -0.238 -1.699 0.814 1.899 sum -1.957 -3.169 9.013 9.753 Atomic orbital electron populations 1.86452 1.16562 1.82336 1.51642 1.24017 0.86137 1.09429 0.95254 0.94117 0.78747 0.76403 0.85550 1.24101 1.06689 0.98324 1.01247 1.20300 1.00593 0.94695 0.97744 1.20742 0.97263 1.01462 0.94793 1.23196 1.06982 0.97083 0.99684 1.18479 0.95116 0.94919 0.91213 1.21222 0.99929 0.96026 0.95352 1.21320 0.93482 0.98825 0.94633 1.19992 1.03069 0.96030 0.96062 1.18380 0.79636 0.82348 0.84432 1.90806 1.44190 1.43892 1.66555 1.45385 1.52822 1.13098 1.23190 1.21679 0.92356 0.98768 0.85083 0.87959 1.23358 0.96862 0.90531 1.05854 1.31721 1.10126 1.10938 1.15965 0.79323 1.05167 0.74450 0.75776 0.76092 1.93535 1.61818 1.60826 1.80578 1.93540 1.64163 1.78987 1.59719 1.30438 1.10317 1.13535 1.21132 1.21195 0.91666 0.98710 0.94424 1.21674 1.01368 0.96425 0.97301 1.21920 0.95771 0.94856 0.96266 1.21686 0.94484 1.01116 0.99214 1.21240 1.01129 0.91707 0.91964 1.23208 1.00966 0.91589 0.99944 1.20922 0.96500 0.96815 0.93891 1.20978 0.98772 0.99085 0.96405 1.84477 1.50859 1.15599 1.16848 0.74131 0.87067 1.19932 1.21307 0.81703 0.80528 0.81766 0.81255 0.74238 0.86724 0.88162 0.83724 0.83195 0.82818 0.82801 0.83211 0.85898 0.86810 0.85302 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.24 12.83 -148.98 -1.91 -0.67 16 2 C -0.04 0.07 2.95 71.24 0.21 0.28 16 3 Si 0.75 -1.23 30.96 68.60 2.12 0.89 16 4 C -0.19 -0.61 5.76 24.67 0.14 -0.47 16 5 C -0.10 -0.08 10.00 21.15 0.21 0.13 16 6 C -0.11 0.06 9.64 21.42 0.21 0.27 16 7 C -0.15 -0.47 6.37 23.98 0.15 -0.31 16 8 C 0.00 0.01 5.88 -20.05 -0.12 -0.11 16 9 C -0.11 0.43 9.48 22.26 0.21 0.64 16 10 C -0.06 0.35 9.48 22.27 0.21 0.56 16 11 C -0.15 -0.17 5.88 -20.05 -0.12 -0.29 16 12 C 0.56 1.81 7.76 86.70 0.67 2.48 16 13 O -0.57 -7.05 15.95 -4.02 -0.06 -7.12 16 14 N -0.69 3.26 5.21 -443.19 -2.31 0.95 16 15 C 0.13 -0.48 4.29 45.51 0.20 -0.29 16 16 H 0.10 0.03 7.50 -2.39 -0.02 0.01 16 17 C -0.13 0.63 7.46 31.21 0.23 0.86 16 18 C -0.57 4.19 4.21 31.22 0.13 4.32 16 19 H 0.19 -2.69 8.14 -2.39 -0.02 -2.71 16 20 S 2.50 3.54 5.13 -56.49 -0.29 3.25 16 21 O -0.97 -7.51 17.13 -127.65 -2.19 -9.70 16 22 O -0.97 -7.67 16.31 -127.65 -2.08 -9.75 16 23 C -0.67 -0.86 5.66 22.27 0.13 -0.74 16 24 C -0.04 -0.04 9.47 22.27 0.21 0.17 16 25 C -0.15 0.22 10.05 22.27 0.22 0.44 16 26 C -0.07 0.21 10.05 22.27 0.22 0.43 16 27 C -0.15 0.36 10.05 22.27 0.22 0.58 16 28 C -0.04 0.01 9.47 22.27 0.21 0.22 16 29 C -0.12 0.86 7.41 31.12 0.23 1.10 16 30 C -0.06 -0.28 9.53 22.26 0.21 -0.07 16 31 C -0.13 -0.54 9.54 22.26 0.21 -0.33 16 32 S 0.06 0.33 19.46 -56.49 -1.10 -0.76 16 33 H 0.41 -5.23 8.74 -74.06 -0.65 -5.88 16 34 H 0.11 -0.79 7.96 -2.39 -0.02 -0.81 16 35 H -0.27 -1.03 7.11 99.48 0.71 -0.33 16 36 H -0.29 -1.89 7.11 99.48 0.71 -1.19 16 37 H 0.17 -0.50 8.06 -2.91 -0.02 -0.53 16 38 H 0.18 -1.29 6.88 -2.91 -0.02 -1.31 16 39 H 0.16 -1.68 6.74 -2.91 -0.02 -1.70 16 40 H 0.17 -2.39 6.38 -2.91 -0.02 -2.40 16 41 H 0.42 -5.02 6.71 -92.70 -0.62 -5.65 16 42 H 0.11 -0.46 7.44 -2.38 -0.02 -0.48 16 43 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.15 -0.12 7.57 -2.91 -0.02 -0.14 16 45 H 0.15 -0.85 8.06 -2.91 -0.02 -0.87 16 46 H 0.15 -1.24 8.06 -2.91 -0.02 -1.27 16 47 H 0.15 -1.13 8.06 -2.91 -0.02 -1.15 16 48 H 0.15 -0.45 7.57 -2.91 -0.02 -0.47 16 49 H 0.12 -1.42 8.14 -2.39 -0.02 -1.44 16 50 H 0.11 -0.84 8.10 -2.39 -0.02 -0.86 16 51 H 0.13 0.80 7.64 -2.91 -0.02 0.78 16 52 H 0.12 0.51 7.26 -2.91 -0.02 0.49 16 Total: 0.00 -37.71 460.74 -3.83 -41.55 By element: Atomic # 1 Polarization: -28.28 SS G_CDS: -0.23 Total: -28.51 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 4.22 Total: 9.89 kcal Atomic # 7 Polarization: 3.26 SS G_CDS: -2.31 Total: 0.95 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -6.24 Total: -27.24 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: 2.12 Total: 0.89 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.39 Total: 2.49 kcal Total: -37.71 -3.83 -41.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_13308390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.672 kcal (2) G-P(sol) polarization free energy of solvation -37.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds