Wall clock time and date at job start Sat Mar 6 2021 17:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86295 * 109.47335 * 2 1 4 4 C 1.50699 * 109.46963 * 120.00066 * 2 1 3 5 5 C 1.38051 * 119.80763 * 65.01783 * 4 2 1 6 6 C 1.38709 * 120.08468 * 179.71928 * 5 4 2 7 7 O 1.35656 * 120.14942 * 180.28196 * 6 5 4 8 8 C 1.40129 * 119.69926 * 0.53935 * 6 5 4 9 9 C 1.47539 * 120.19095 * 179.74671 * 8 6 5 10 10 O 1.21591 * 120.00412 * 359.71836 * 9 8 6 11 11 N 1.34781 * 119.99824 * 179.72213 * 9 8 6 12 12 C 1.46504 * 119.99665 * 179.97438 * 11 9 8 13 13 H 1.08999 * 112.85136 * 336.19533 * 12 11 9 14 14 C 1.53779 * 113.61484 * 107.49929 * 12 11 9 15 15 C 1.53785 * 87.08093 * 89.11287 * 14 12 11 16 16 H 1.09002 * 113.61570 * 270.88522 * 15 14 12 17 17 S 1.81402 * 113.69069 * 139.99057 * 15 14 12 18 18 O 1.42096 * 110.54223 * 192.56319 * 17 15 14 19 19 O 1.42104 * 110.54421 * 329.31231 * 17 15 14 20 20 C 1.76196 * 104.44932 * 80.93663 * 17 15 14 21 21 C 1.38233 * 120.00422 * 269.72857 * 20 17 15 22 22 C 1.38238 * 120.00503 * 179.78830 * 21 20 17 23 23 C 1.38237 * 119.99453 * 0.45959 * 22 21 20 24 24 C 1.38233 * 120.00330 * 359.77215 * 23 22 21 25 25 C 1.38233 * 119.99778 * 0.02562 * 24 23 22 26 26 C 1.53781 * 87.08241 * 25.43228 * 15 14 12 27 27 C 1.39708 * 119.61851 * 359.46652 * 8 6 5 28 28 C 1.37781 * 119.90491 * 0.25230 * 27 8 6 29 29 H 0.96703 * 114.00115 * 300.00083 * 1 2 3 30 30 H 1.09001 * 109.47054 * 239.99524 * 2 1 3 31 31 H 1.48501 * 110.00144 * 178.68072 * 3 2 1 32 32 H 1.48503 * 109.99969 * 300.00156 * 3 2 1 33 33 H 1.08002 * 119.95470 * 0.02562 * 5 4 2 34 34 H 0.96708 * 113.99918 * 270.25581 * 7 6 5 35 35 H 0.96996 * 120.00382 * 359.97438 * 11 9 8 36 36 H 1.09003 * 113.61775 * 334.57164 * 14 12 11 37 37 H 1.08996 * 113.61960 * 203.65890 * 14 12 11 38 38 H 1.08008 * 119.99860 * 0.02562 * 21 20 17 39 39 H 1.07999 * 119.99746 * 180.25467 * 22 21 20 40 40 H 1.08007 * 119.99312 * 179.79202 * 23 22 21 41 41 H 1.07994 * 119.99775 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.00068 * 179.97438 * 25 24 23 43 43 H 1.09005 * 113.61302 * 89.11252 * 26 15 14 44 44 H 1.08993 * 113.62030 * 220.02098 * 26 15 14 45 45 H 1.08000 * 120.04486 * 180.28075 * 27 8 6 46 46 H 1.08005 * 119.85136 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6831 -2.0586 1.3939 6 6 2.1477 -2.7195 2.5214 7 8 1.9095 -4.0454 2.6806 8 6 2.8597 -2.0101 3.4979 9 6 3.3541 -2.7010 4.7041 10 8 3.1397 -3.8883 4.8556 11 7 4.0433 -2.0161 5.6382 12 6 4.5337 -2.7021 6.8362 13 1 3.9640 -3.6008 7.0725 14 6 6.0565 -2.9163 6.8435 15 6 6.1678 -1.5402 7.5209 16 1 6.2496 -0.7122 6.8168 17 16 7.4166 -1.4735 8.8350 18 8 7.2704 -0.2863 9.6020 19 8 7.5465 -2.7410 9.4643 20 6 8.9421 -1.2541 7.9810 21 6 9.6769 -2.3557 7.5843 22 6 10.8715 -2.1836 6.9104 23 6 11.3361 -0.9096 6.6417 24 6 10.6037 0.1921 7.0426 25 6 9.4070 0.0198 7.7127 26 6 4.7384 -1.7680 8.0405 27 6 3.1038 -0.6461 3.3199 28 6 2.6399 -0.0068 2.1909 29 1 -0.3933 0.4417 0.7651 30 1 1.7923 -0.5139 -0.8900 31 1 3.5347 1.7702 0.0321 32 1 1.5615 2.4679 -1.2085 33 1 1.1306 -2.6004 0.6405 34 1 1.0838 -4.2439 3.1434 35 1 4.2146 -1.0691 5.5173 36 1 6.4977 -2.9494 5.8473 37 1 6.3783 -3.7424 7.4776 38 1 9.3157 -3.3510 7.7974 39 1 11.4435 -3.0444 6.5969 40 1 12.2712 -0.7752 6.1182 41 1 10.9669 1.1873 6.8330 42 1 8.8350 0.8806 8.0263 43 1 4.6998 -2.2802 9.0019 44 1 4.1153 -0.8742 8.0107 45 1 3.6557 -0.0936 4.0659 46 1 2.8287 1.0478 2.0544 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12550010_13422076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:57:50 Heat of formation + Delta-G solvation = -77.962852 kcal Electronic energy + Delta-G solvation = -33217.161719 eV Core-core repulsion = 28553.563534 eV Total energy + Delta-G solvation = -4663.598186 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.106 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.88390 -40.78341 -40.16237 -39.23390 -38.38828 -38.11641 -37.24112 -36.97740 -34.62381 -32.67781 -32.41808 -32.12024 -31.21390 -28.04741 -27.24477 -26.70157 -24.30155 -24.05489 -23.83587 -23.66433 -21.95132 -21.19020 -19.96378 -19.57705 -19.18193 -18.80043 -18.29830 -17.99671 -17.44763 -17.08925 -17.00412 -16.76308 -16.59503 -16.35802 -16.09179 -15.83322 -15.77780 -15.63385 -15.40222 -15.29075 -14.89985 -14.63070 -14.46934 -14.30300 -14.13271 -13.97928 -13.95042 -13.86132 -13.33694 -13.31612 -13.11223 -13.05223 -13.01483 -12.40115 -12.36221 -12.34319 -12.22954 -12.17928 -11.83839 -11.76082 -11.31488 -10.95798 -10.62123 -10.47356 -10.34410 -10.17747 -10.14392 -9.90314 -5.19645 -1.04501 -0.52123 -0.25702 -0.00096 0.19495 1.09887 1.47776 1.63202 1.72133 1.83384 1.84284 2.32765 2.45693 2.60071 2.77656 2.94666 2.99970 3.27295 3.29140 3.31304 3.38228 3.48530 3.55354 3.62808 3.74666 3.80333 3.87125 3.90423 4.09497 4.19413 4.22041 4.22574 4.24051 4.30682 4.38032 4.45503 4.48734 4.57812 4.59134 4.61644 4.69819 4.81649 4.84670 4.96648 5.01173 5.09951 5.13433 5.26989 5.28375 5.42510 5.72409 6.27119 6.38365 6.62421 7.06381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.075 4.075 3 Si 0.690 3.310 4 C -0.075 4.075 5 C -0.129 4.129 6 C 0.175 3.825 7 O -0.476 6.476 8 C -0.166 4.166 9 C 0.563 3.437 10 O -0.511 6.511 11 N -0.713 5.713 12 C 0.137 3.863 13 H 0.119 0.881 14 C -0.125 4.125 15 C -0.604 4.604 16 H 0.154 0.846 17 S 2.500 3.500 18 O -0.934 6.934 19 O -0.929 6.929 20 C -0.659 4.659 21 C -0.022 4.022 22 C -0.140 4.140 23 C -0.065 4.065 24 C -0.140 4.140 25 C -0.026 4.026 26 C -0.117 4.117 27 C -0.065 4.065 28 C -0.134 4.134 29 H 0.380 0.620 30 H 0.118 0.882 31 H -0.256 1.256 32 H -0.252 1.252 33 H 0.141 0.859 34 H 0.399 0.601 35 H 0.400 0.600 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.134 0.866 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 5.402 -1.654 5.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.185 4.185 3 Si 0.592 3.408 4 C -0.075 4.075 5 C -0.147 4.147 6 C 0.128 3.872 7 O -0.288 6.288 8 C -0.169 4.169 9 C 0.351 3.649 10 O -0.386 6.386 11 N -0.366 5.366 12 C 0.030 3.970 13 H 0.137 0.863 14 C -0.164 4.164 15 C -0.713 4.713 16 H 0.172 0.828 17 S 2.681 3.319 18 O -0.931 6.931 19 O -0.926 6.926 20 C -0.746 4.746 21 C -0.041 4.041 22 C -0.159 4.159 23 C -0.083 4.083 24 C -0.159 4.159 25 C -0.045 4.045 26 C -0.157 4.157 27 C -0.084 4.084 28 C -0.152 4.152 29 H 0.228 0.772 30 H 0.136 0.864 31 H -0.181 1.181 32 H -0.177 1.177 33 H 0.159 0.841 34 H 0.258 0.742 35 H 0.236 0.764 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.159 0.841 43 H 0.129 0.871 44 H 0.118 0.882 45 H 0.151 0.849 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.015 4.681 -1.918 5.059 hybrid contribution 0.360 0.170 -0.894 0.979 sum 0.345 4.851 -2.812 5.618 Atomic orbital electron populations 1.86546 1.16631 1.81669 1.49279 1.25193 0.85598 1.10471 0.97247 0.94787 0.81053 0.77413 0.87574 1.20463 0.96599 0.94214 0.96264 1.21367 1.00890 0.93899 0.98558 1.18507 0.93596 0.83475 0.91585 1.84766 1.46225 1.17796 1.79984 1.20365 1.05939 0.94375 0.96267 1.18045 0.77863 0.86657 0.82375 1.90854 1.56199 1.14417 1.77167 1.45552 1.56998 1.13104 1.20927 1.21652 0.94536 0.96697 0.84138 0.86299 1.23258 0.97997 0.92549 1.02613 1.31789 1.13297 1.08093 1.18161 0.82788 1.05392 0.75445 0.74815 0.76252 1.93584 1.85763 1.47869 1.65884 1.93593 1.85296 1.42197 1.71554 1.30518 1.23465 0.99976 1.20601 1.20998 0.93634 0.97855 0.91644 1.21377 0.96782 0.97890 0.99818 1.21578 0.98736 0.92766 0.95205 1.21356 0.95416 0.99592 0.99548 1.20989 0.95746 0.95400 0.92384 1.23086 0.91312 1.01912 0.99345 1.21136 0.97376 0.92573 0.97318 1.20931 1.00032 0.99844 0.94388 0.77215 0.86446 1.18052 1.17698 0.84133 0.74203 0.76377 0.88908 0.86513 0.84036 0.84811 0.85039 0.84843 0.84116 0.87103 0.88228 0.84862 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.73 12.83 -35.23 -0.45 0.28 16 2 C -0.07 0.14 2.79 36.01 0.10 0.24 16 3 Si 0.69 -1.93 29.78 -169.99 -5.06 -7.00 16 4 C -0.07 0.12 5.35 -104.58 -0.56 -0.44 16 5 C -0.13 0.03 9.60 -39.48 -0.38 -0.35 16 6 C 0.18 0.15 6.72 -38.70 -0.26 -0.11 16 7 O -0.48 -0.90 11.58 -40.55 -0.47 -1.37 16 8 C -0.17 0.03 5.89 -104.85 -0.62 -0.59 16 9 C 0.56 0.53 7.76 -12.47 -0.10 0.44 16 10 O -0.51 -2.38 14.76 -16.59 -0.24 -2.62 16 11 N -0.71 1.63 5.21 -54.05 -0.28 1.34 16 12 C 0.14 -0.29 4.32 -67.11 -0.29 -0.58 16 13 H 0.12 -0.10 7.46 -51.93 -0.39 -0.49 16 14 C -0.12 0.32 7.44 -25.92 -0.19 0.13 16 15 C -0.60 2.06 4.19 -25.92 -0.11 1.96 16 16 H 0.15 -0.92 8.14 -51.93 -0.42 -1.34 16 17 S 2.50 0.27 5.12 -107.50 -0.55 -0.28 16 18 O -0.93 -2.97 17.13 -57.54 -0.99 -3.95 16 19 O -0.93 -2.69 16.35 -57.54 -0.94 -3.63 16 20 C -0.66 -0.21 5.66 -39.58 -0.22 -0.43 16 21 C -0.02 0.00 9.47 -39.58 -0.37 -0.38 16 22 C -0.14 0.08 10.05 -39.58 -0.40 -0.32 16 23 C -0.06 0.06 10.05 -39.58 -0.40 -0.33 16 24 C -0.14 0.11 10.05 -39.59 -0.40 -0.29 16 25 C -0.03 0.00 9.47 -39.58 -0.37 -0.37 16 26 C -0.12 0.42 7.42 -25.92 -0.19 0.23 16 27 C -0.07 0.19 9.54 -39.20 -0.37 -0.18 16 28 C -0.13 0.40 8.64 -39.63 -0.34 0.06 16 29 H 0.38 -2.06 8.70 45.56 0.40 -1.66 16 30 H 0.12 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H -0.26 0.14 7.11 56.52 0.40 0.54 16 32 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 33 H 0.14 -0.05 8.06 -52.49 -0.42 -0.47 16 34 H 0.40 -0.73 9.06 45.56 0.41 -0.32 16 35 H 0.40 -2.05 6.73 -40.82 -0.27 -2.33 16 36 H 0.09 -0.24 8.14 -51.93 -0.42 -0.67 16 37 H 0.12 -0.31 7.47 -51.93 -0.39 -0.70 16 38 H 0.14 -0.16 7.57 -52.48 -0.40 -0.56 16 39 H 0.13 -0.34 8.06 -52.49 -0.42 -0.76 16 40 H 0.13 -0.41 8.06 -52.48 -0.42 -0.84 16 41 H 0.13 -0.39 8.06 -52.49 -0.42 -0.81 16 42 H 0.14 -0.22 7.57 -52.48 -0.40 -0.62 16 43 H 0.11 -0.45 8.10 -51.93 -0.42 -0.87 16 44 H 0.10 -0.50 8.14 -51.93 -0.42 -0.93 16 45 H 0.13 -0.81 6.40 -52.49 -0.34 -1.14 16 46 H 0.14 -0.71 4.88 -52.48 -0.26 -0.97 16 LS Contribution 399.93 15.07 6.03 6.03 Total: 0.00 -14.75 399.93 -13.06 -27.81 By element: Atomic # 1 Polarization: -10.67 SS G_CDS: -4.62 Total: -15.29 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -5.48 Total: -1.32 kcal Atomic # 7 Polarization: 1.63 SS G_CDS: -0.28 Total: 1.34 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -3.09 Total: -11.29 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: -5.06 Total: -7.00 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -0.55 Total: -0.28 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -14.75 -13.06 -27.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_13422076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.151 kcal (2) G-P(sol) polarization free energy of solvation -14.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds