Wall clock time and date at job start Sat Mar 6 2021 17:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86295 * 109.47335 * 2 1 4 4 C 1.50699 * 109.46963 * 120.00066 * 2 1 3 5 5 C 1.38051 * 119.80763 * 65.01783 * 4 2 1 6 6 C 1.38709 * 120.08468 * 179.71928 * 5 4 2 7 7 O 1.35656 * 120.14942 * 180.28196 * 6 5 4 8 8 C 1.40129 * 119.69926 * 0.53935 * 6 5 4 9 9 C 1.47539 * 120.19095 * 179.74671 * 8 6 5 10 10 O 1.21591 * 120.00412 * 359.71836 * 9 8 6 11 11 N 1.34781 * 119.99824 * 179.72213 * 9 8 6 12 12 C 1.46504 * 119.99665 * 179.97438 * 11 9 8 13 13 H 1.08999 * 112.85136 * 336.19533 * 12 11 9 14 14 C 1.53779 * 113.61484 * 107.49929 * 12 11 9 15 15 C 1.53785 * 87.08093 * 89.11287 * 14 12 11 16 16 H 1.09002 * 113.61570 * 270.88522 * 15 14 12 17 17 S 1.81402 * 113.69069 * 139.99057 * 15 14 12 18 18 O 1.42096 * 110.54223 * 192.56319 * 17 15 14 19 19 O 1.42104 * 110.54421 * 329.31231 * 17 15 14 20 20 C 1.76196 * 104.44932 * 80.93663 * 17 15 14 21 21 C 1.38233 * 120.00422 * 269.72857 * 20 17 15 22 22 C 1.38238 * 120.00503 * 179.78830 * 21 20 17 23 23 C 1.38237 * 119.99453 * 0.45959 * 22 21 20 24 24 C 1.38233 * 120.00330 * 359.77215 * 23 22 21 25 25 C 1.38233 * 119.99778 * 0.02562 * 24 23 22 26 26 C 1.53781 * 87.08241 * 25.43228 * 15 14 12 27 27 C 1.39708 * 119.61851 * 359.46652 * 8 6 5 28 28 C 1.37781 * 119.90491 * 0.25230 * 27 8 6 29 29 H 0.96703 * 114.00115 * 300.00083 * 1 2 3 30 30 H 1.09001 * 109.47054 * 239.99524 * 2 1 3 31 31 H 1.48501 * 110.00144 * 178.68072 * 3 2 1 32 32 H 1.48503 * 109.99969 * 300.00156 * 3 2 1 33 33 H 1.08002 * 119.95470 * 0.02562 * 5 4 2 34 34 H 0.96708 * 113.99918 * 270.25581 * 7 6 5 35 35 H 0.96996 * 120.00382 * 359.97438 * 11 9 8 36 36 H 1.09003 * 113.61775 * 334.57164 * 14 12 11 37 37 H 1.08996 * 113.61960 * 203.65890 * 14 12 11 38 38 H 1.08008 * 119.99860 * 0.02562 * 21 20 17 39 39 H 1.07999 * 119.99746 * 180.25467 * 22 21 20 40 40 H 1.08007 * 119.99312 * 179.79202 * 23 22 21 41 41 H 1.07994 * 119.99775 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.00068 * 179.97438 * 25 24 23 43 43 H 1.09005 * 113.61302 * 89.11252 * 26 15 14 44 44 H 1.08993 * 113.62030 * 220.02098 * 26 15 14 45 45 H 1.08000 * 120.04486 * 180.28075 * 27 8 6 46 46 H 1.08005 * 119.85136 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6831 -2.0586 1.3939 6 6 2.1477 -2.7195 2.5214 7 8 1.9095 -4.0454 2.6806 8 6 2.8597 -2.0101 3.4979 9 6 3.3541 -2.7010 4.7041 10 8 3.1397 -3.8883 4.8556 11 7 4.0433 -2.0161 5.6382 12 6 4.5337 -2.7021 6.8362 13 1 3.9640 -3.6008 7.0725 14 6 6.0565 -2.9163 6.8435 15 6 6.1678 -1.5402 7.5209 16 1 6.2496 -0.7122 6.8168 17 16 7.4166 -1.4735 8.8350 18 8 7.2704 -0.2863 9.6020 19 8 7.5465 -2.7410 9.4643 20 6 8.9421 -1.2541 7.9810 21 6 9.6769 -2.3557 7.5843 22 6 10.8715 -2.1836 6.9104 23 6 11.3361 -0.9096 6.6417 24 6 10.6037 0.1921 7.0426 25 6 9.4070 0.0198 7.7127 26 6 4.7384 -1.7680 8.0405 27 6 3.1038 -0.6461 3.3199 28 6 2.6399 -0.0068 2.1909 29 1 -0.3933 0.4417 0.7651 30 1 1.7923 -0.5139 -0.8900 31 1 3.5347 1.7702 0.0321 32 1 1.5615 2.4679 -1.2085 33 1 1.1306 -2.6004 0.6405 34 1 1.0838 -4.2439 3.1434 35 1 4.2146 -1.0691 5.5173 36 1 6.4977 -2.9494 5.8473 37 1 6.3783 -3.7424 7.4776 38 1 9.3157 -3.3510 7.7974 39 1 11.4435 -3.0444 6.5969 40 1 12.2712 -0.7752 6.1182 41 1 10.9669 1.1873 6.8330 42 1 8.8350 0.8806 8.0263 43 1 4.6998 -2.2802 9.0019 44 1 4.1153 -0.8742 8.0107 45 1 3.6557 -0.0936 4.0659 46 1 2.8287 1.0478 2.0544 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_13422076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:57:48 Heat of formation + Delta-G solvation = -85.237609 kcal Electronic energy + Delta-G solvation = -33217.477176 eV Core-core repulsion = 28553.563534 eV Total energy + Delta-G solvation = -4663.913643 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.106 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.80814 -40.64767 -40.05307 -39.17990 -38.36535 -38.19215 -37.13548 -37.06932 -34.58800 -32.54161 -32.31677 -32.01502 -31.10330 -27.93064 -27.01596 -26.56068 -24.21284 -23.89880 -23.73323 -23.58395 -21.85463 -21.10213 -19.90883 -19.47798 -19.11369 -18.73165 -18.19179 -17.92743 -17.32610 -16.99381 -16.96184 -16.69121 -16.46184 -16.27121 -16.02034 -15.76507 -15.68685 -15.53645 -15.31966 -15.19074 -14.72161 -14.51007 -14.41517 -14.20756 -14.01319 -13.83868 -13.81990 -13.74435 -13.25162 -13.25008 -13.19212 -13.11389 -12.92662 -12.30159 -12.23593 -12.22761 -12.11181 -11.99495 -11.76794 -11.67995 -11.23284 -10.97902 -10.48570 -10.38069 -10.28180 -10.06134 -10.03109 -9.78458 -4.98820 -0.99293 -0.42208 -0.18991 0.14996 0.28044 1.28551 1.63878 1.70121 1.77911 1.94873 2.00829 2.42226 2.56495 2.72508 2.90548 3.08611 3.12134 3.37488 3.42822 3.53368 3.57154 3.68490 3.79748 3.81314 3.88091 3.93712 4.08374 4.08873 4.27203 4.36678 4.36851 4.40888 4.46174 4.49877 4.54731 4.61496 4.69592 4.72636 4.76839 4.83201 4.88100 4.93835 5.02508 5.06733 5.14662 5.25092 5.25588 5.37881 5.41810 5.60015 5.84577 6.44024 6.71356 6.75593 7.13870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.086 4.086 3 Si 0.791 3.209 4 C -0.073 4.073 5 C -0.142 4.142 6 C 0.153 3.847 7 O -0.499 6.499 8 C -0.179 4.179 9 C 0.561 3.439 10 O -0.559 6.559 11 N -0.695 5.695 12 C 0.131 3.869 13 H 0.102 0.898 14 C -0.129 4.129 15 C -0.574 4.574 16 H 0.190 0.810 17 S 2.501 3.499 18 O -0.970 6.970 19 O -0.968 6.968 20 C -0.666 4.666 21 C -0.041 4.041 22 C -0.150 4.150 23 C -0.072 4.072 24 C -0.147 4.147 25 C -0.041 4.041 26 C -0.117 4.117 27 C -0.052 4.052 28 C -0.130 4.130 29 H 0.398 0.602 30 H 0.106 0.894 31 H -0.277 1.277 32 H -0.305 1.305 33 H 0.131 0.869 34 H 0.408 0.592 35 H 0.417 0.583 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.173 0.827 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 7.916 -1.858 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.195 4.195 3 Si 0.696 3.304 4 C -0.074 4.074 5 C -0.161 4.161 6 C 0.106 3.894 7 O -0.312 6.312 8 C -0.183 4.183 9 C 0.349 3.651 10 O -0.438 6.438 11 N -0.348 5.348 12 C 0.024 3.976 13 H 0.120 0.880 14 C -0.168 4.168 15 C -0.687 4.687 16 H 0.207 0.793 17 S 2.687 3.313 18 O -0.967 6.967 19 O -0.965 6.965 20 C -0.754 4.754 21 C -0.060 4.060 22 C -0.169 4.169 23 C -0.089 4.089 24 C -0.165 4.165 25 C -0.060 4.060 26 C -0.156 4.156 27 C -0.070 4.070 28 C -0.147 4.147 29 H 0.248 0.752 30 H 0.123 0.877 31 H -0.204 1.204 32 H -0.234 1.234 33 H 0.149 0.851 34 H 0.268 0.732 35 H 0.257 0.743 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.131 0.869 44 H 0.143 0.857 45 H 0.190 0.810 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.576 7.215 -2.049 7.522 hybrid contribution 0.151 -0.612 -0.934 1.127 sum 0.727 6.602 -2.982 7.281 Atomic orbital electron populations 1.86509 1.16944 1.82232 1.50605 1.25424 0.85593 1.11668 0.96778 0.93715 0.77873 0.73828 0.84976 1.20570 0.96534 0.93605 0.96682 1.21341 1.01680 0.94743 0.98320 1.18761 0.94777 0.83241 0.92572 1.84721 1.47116 1.19046 1.80362 1.20404 1.06511 0.95591 0.95762 1.18281 0.77662 0.86216 0.82942 1.90832 1.58228 1.16500 1.78215 1.45381 1.55688 1.13748 1.19986 1.21636 0.94407 0.96813 0.84771 0.87992 1.23308 0.97657 0.92977 1.02891 1.31666 1.11350 1.08942 1.16702 0.79262 1.05143 0.75964 0.73303 0.76923 1.93533 1.86418 1.48730 1.67999 1.93540 1.86063 1.43353 1.73528 1.30468 1.23645 1.00387 1.20860 1.21194 0.94314 0.98148 0.92361 1.21666 0.96678 0.98911 0.99608 1.21911 0.99507 0.92509 0.95012 1.21685 0.95104 1.00735 0.99006 1.21248 0.96424 0.95547 0.92737 1.23219 0.91061 1.02579 0.98734 1.21534 0.96291 0.91300 0.97913 1.21243 0.98785 1.01072 0.93601 0.75212 0.87702 1.20388 1.23352 0.85116 0.73224 0.74348 0.88449 0.86916 0.83771 0.83320 0.82937 0.82821 0.83075 0.86928 0.85707 0.80974 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.56 12.83 -148.98 -1.91 -0.35 16 2 C -0.09 0.35 2.79 71.24 0.20 0.55 16 3 Si 0.79 -5.47 29.78 68.60 2.04 -3.43 16 4 C -0.07 0.28 5.35 -19.83 -0.11 0.18 16 5 C -0.14 -0.09 9.60 22.34 0.21 0.13 16 6 C 0.15 0.45 6.72 22.84 0.15 0.61 16 7 O -0.50 -3.12 11.58 -68.80 -0.80 -3.92 16 8 C -0.18 0.13 5.89 -20.01 -0.12 0.01 16 9 C 0.56 1.07 7.76 86.70 0.67 1.74 16 10 O -0.56 -6.11 14.76 16.92 0.25 -5.87 16 11 N -0.69 4.21 5.21 -443.17 -2.31 1.90 16 12 C 0.13 -0.63 4.32 45.52 0.20 -0.43 16 13 H 0.10 -0.07 7.46 -2.39 -0.02 -0.09 16 14 C -0.13 0.71 7.44 31.12 0.23 0.94 16 15 C -0.57 4.70 4.19 31.12 0.13 4.83 16 16 H 0.19 -2.89 8.14 -2.39 -0.02 -2.91 16 17 S 2.50 1.58 5.12 -56.49 -0.29 1.29 16 18 O -0.97 -6.60 17.13 -127.65 -2.19 -8.79 16 19 O -0.97 -7.11 16.35 -127.65 -2.09 -9.19 16 20 C -0.67 -0.56 5.66 22.27 0.13 -0.43 16 21 C -0.04 -0.03 9.47 22.27 0.21 0.18 16 22 C -0.15 0.21 10.05 22.27 0.22 0.43 16 23 C -0.07 0.21 10.05 22.27 0.22 0.43 16 24 C -0.15 0.39 10.05 22.27 0.22 0.61 16 25 C -0.04 0.03 9.47 22.27 0.21 0.24 16 26 C -0.12 1.00 7.42 31.12 0.23 1.23 16 27 C -0.05 0.44 9.54 22.52 0.21 0.65 16 28 C -0.13 1.09 8.64 22.24 0.19 1.29 16 29 H 0.40 -4.61 8.70 -74.06 -0.64 -5.26 16 30 H 0.11 -0.19 7.96 -2.39 -0.02 -0.21 16 31 H -0.28 0.87 7.11 99.48 0.71 1.58 16 32 H -0.31 -0.61 7.11 99.48 0.71 0.10 16 33 H 0.13 0.21 8.06 -2.91 -0.02 0.18 16 34 H 0.41 -0.29 9.06 -74.05 -0.67 -0.96 16 35 H 0.42 -5.67 6.73 -92.71 -0.62 -6.29 16 36 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.11 -0.49 7.47 -2.39 -0.02 -0.51 16 38 H 0.14 -0.13 7.57 -2.91 -0.02 -0.15 16 39 H 0.15 -0.80 8.06 -2.91 -0.02 -0.83 16 40 H 0.15 -1.20 8.06 -2.91 -0.02 -1.23 16 41 H 0.15 -1.15 8.06 -2.91 -0.02 -1.18 16 42 H 0.15 -0.56 7.57 -2.91 -0.02 -0.58 16 43 H 0.11 -0.95 8.10 -2.38 -0.02 -0.96 16 44 H 0.12 -1.64 8.14 -2.39 -0.02 -1.66 16 45 H 0.17 -2.90 6.40 -2.91 -0.02 -2.92 16 46 H 0.17 -2.37 4.88 -2.91 -0.01 -2.39 16 Total: 0.00 -37.36 399.93 -4.68 -42.04 By element: Atomic # 1 Polarization: -26.04 SS G_CDS: -0.83 Total: -26.87 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 3.43 Total: 13.17 kcal Atomic # 7 Polarization: 4.21 SS G_CDS: -2.31 Total: 1.90 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -6.73 Total: -28.12 kcal Atomic # 14 Polarization: -5.47 SS G_CDS: 2.04 Total: -3.43 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -0.29 Total: 1.29 kcal Total: -37.36 -4.68 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_13422076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.194 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds