Wall clock time and date at job start Sat Mar 6 2021 17:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39055 * 110.99854 * 236.04434 * 2 1 3 5 5 C 1.39189 * 119.93336 * 239.73141 * 4 2 1 6 6 C 1.50699 * 119.96513 * 359.97438 * 5 4 2 7 7 O 1.42904 * 109.47329 * 285.00504 * 6 5 4 8 8 Si 1.86299 * 109.47164 * 165.00376 * 6 5 4 9 9 C 1.37634 * 120.06841 * 179.72480 * 5 4 2 10 10 C 1.39773 * 119.92800 * 0.54663 * 9 5 4 11 11 C 1.47523 * 120.06701 * 179.74343 * 10 9 5 12 12 O 1.21593 * 120.00052 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99932 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00083 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.84551 * 336.19151 * 14 13 11 16 16 C 1.53781 * 113.61733 * 107.50058 * 14 13 11 17 17 C 1.53785 * 87.08028 * 89.11533 * 16 14 13 18 18 H 1.09002 * 113.61339 * 270.88819 * 17 16 14 19 19 S 1.81392 * 113.68875 * 139.99341 * 17 16 14 20 20 O 1.42103 * 110.54532 * 194.09281 * 19 17 16 21 21 O 1.42105 * 110.54747 * 330.83821 * 19 17 16 22 22 C 1.76197 * 104.44994 * 82.46713 * 19 17 16 23 23 C 1.38244 * 119.99908 * 269.72354 * 22 19 17 24 24 C 1.38233 * 119.99617 * 179.74555 * 23 22 19 25 25 C 1.38230 * 120.00251 * 0.55262 * 24 23 22 26 26 C 1.38232 * 120.00020 * 359.70171 * 25 24 23 27 27 C 1.38233 * 120.00133 * 0.02562 * 26 25 24 28 28 C 1.53773 * 113.61364 * 204.99953 * 14 13 11 29 29 C 1.39813 * 119.86667 * 359.72615 * 10 9 5 30 30 C 1.37595 * 119.92779 * 359.97438 * 29 10 9 31 31 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 32 32 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 33 33 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 34 34 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 35 35 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 37 37 H 1.08996 * 109.47131 * 45.00439 * 6 5 4 38 38 H 0.96702 * 113.99585 * 299.99492 * 7 6 5 39 39 H 1.48503 * 110.00258 * 58.68114 * 8 6 5 40 40 H 1.48503 * 110.00385 * 180.02562 * 8 6 5 41 41 H 1.08001 * 120.03741 * 180.24820 * 9 5 4 42 42 H 0.97002 * 119.99714 * 0.02562 * 13 11 10 43 43 H 1.08995 * 113.61464 * 203.66442 * 16 14 13 44 44 H 1.09002 * 113.61171 * 334.56992 * 16 14 13 45 45 H 1.08003 * 119.99627 * 0.02562 * 23 22 19 46 46 H 1.08002 * 119.99239 * 180.27650 * 24 23 22 47 47 H 1.07999 * 119.99906 * 179.72602 * 25 24 23 48 48 H 1.08000 * 120.00092 * 179.97438 * 26 25 24 49 49 H 1.08002 * 120.00130 * 179.97438 * 27 26 25 50 50 H 1.09000 * 113.61781 * 25.42853 * 28 14 13 51 51 H 1.09004 * 113.61764 * 156.33525 * 28 14 13 52 52 H 1.07995 * 120.04040 * 179.97438 * 29 10 9 53 53 H 1.07996 * 119.96661 * 180.02562 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7251 -1.0768 5 6 2.7838 -1.8297 -0.8521 6 6 3.1270 -2.2377 0.5575 7 8 4.0944 -1.3326 1.0933 8 14 3.8280 -3.9638 0.5511 9 6 3.2739 -2.5528 -1.9157 10 6 2.9602 -2.1700 -3.2228 11 6 3.4885 -2.9395 -4.3653 12 8 4.1980 -3.9075 -4.1703 13 7 3.1848 -2.5694 -5.6251 14 6 3.7089 -3.3339 -6.7597 15 1 4.6173 -3.8846 -6.5154 16 6 2.6448 -4.1832 -7.4746 17 6 2.3723 -2.9552 -8.3593 18 1 1.6169 -2.2829 -7.9525 19 16 2.0868 -3.3626 -10.1037 20 8 2.1651 -2.1938 -10.9081 21 8 2.7881 -4.5459 -10.4608 22 6 0.3883 -3.8259 -10.1747 23 6 0.0239 -5.1468 -9.9917 24 6 -1.3091 -5.5094 -10.0421 25 6 -2.2767 -4.5531 -10.2869 26 6 -1.9119 -3.2331 -10.4751 27 6 -0.5794 -2.8695 -10.4191 28 6 3.8148 -2.5158 -8.0574 29 6 2.1445 -1.0566 -3.4455 30 6 1.6526 -0.3415 -2.3778 31 1 -0.3634 -1.0252 0.0708 32 1 -0.3633 0.4513 -0.9233 33 1 -0.3633 0.5740 0.8525 34 1 1.6461 1.8947 0.8901 35 1 3.0851 1.3422 0.0005 36 1 1.6460 1.8948 -0.8900 37 1 2.2271 -2.2133 1.1721 38 1 4.9228 -1.3024 0.5953 39 1 5.0374 -4.0177 -0.3090 40 1 4.1700 -4.3783 1.9355 41 1 3.9042 -3.4122 -1.7406 42 1 2.6191 -1.7969 -5.7807 43 1 3.0576 -5.0315 -8.0203 44 1 1.8042 -4.4571 -6.8371 45 1 0.7804 -5.8947 -9.8048 46 1 -1.5940 -6.5406 -9.8947 47 1 -3.3177 -4.8371 -10.3307 48 1 -2.6679 -2.4860 -10.6668 49 1 -0.2944 -1.8383 -10.5666 50 1 3.9187 -1.4436 -7.8905 51 1 4.5474 -2.9083 -8.7626 52 1 1.9007 -0.7581 -4.4543 53 1 1.0220 0.5184 -2.5491 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_13422196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:57:59 Heat of formation + Delta-G solvation = -23.768582 kcal Electronic energy + Delta-G solvation = -37572.326854 eV Core-core repulsion = 32697.722132 eV Total energy + Delta-G solvation = -4874.604722 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.149 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.83548 -40.92638 -40.04282 -39.39245 -38.22093 -37.92218 -37.23116 -37.07174 -34.64453 -32.70907 -32.31054 -32.00316 -31.27439 -28.51209 -27.39492 -27.01143 -26.90204 -25.76468 -24.17374 -23.71709 -23.39953 -22.84499 -21.44914 -21.11312 -19.90348 -19.32917 -18.94204 -18.21736 -17.79855 -17.58444 -17.29406 -16.97915 -16.94926 -16.57804 -16.32014 -16.23140 -16.02734 -15.87699 -15.63981 -15.58975 -15.49288 -15.10311 -14.84327 -14.75247 -14.49786 -14.22661 -14.15514 -14.02402 -13.96752 -13.88039 -13.74727 -13.47386 -13.24085 -13.23608 -13.12127 -13.10322 -12.98298 -12.65099 -12.61377 -12.22308 -12.19453 -12.11564 -12.00313 -11.84496 -11.76092 -11.25798 -11.12975 -10.56816 -10.37403 -10.28975 -10.11400 -10.04820 -9.78209 -9.48375 -4.98226 -0.99577 -0.38298 -0.18001 0.15769 0.29331 1.27611 1.54452 1.62203 1.77816 1.89369 1.93077 2.43146 2.61488 2.72171 2.81697 2.90435 3.07828 3.37562 3.44510 3.50578 3.58783 3.63454 3.78804 3.81632 3.88119 3.94921 4.05211 4.09978 4.15719 4.25536 4.38152 4.39180 4.40666 4.44938 4.47200 4.49634 4.55293 4.56322 4.61923 4.69010 4.69212 4.70781 4.80366 4.84304 4.89265 4.95099 4.99176 5.01063 5.05472 5.08006 5.13082 5.27042 5.27252 5.38684 5.39289 5.56934 5.85850 5.87534 6.31054 6.39873 6.51798 7.07915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.524 5.524 3 C 0.034 3.966 4 C 0.141 3.859 5 C -0.111 4.111 6 C -0.048 4.048 7 O -0.534 6.534 8 Si 0.737 3.263 9 C -0.066 4.066 10 C -0.148 4.148 11 C 0.563 3.437 12 O -0.572 6.572 13 N -0.693 5.693 14 C 0.129 3.871 15 H 0.103 0.897 16 C -0.125 4.125 17 C -0.575 4.575 18 H 0.189 0.811 19 S 2.500 3.500 20 O -0.972 6.972 21 O -0.967 6.967 22 C -0.666 4.666 23 C -0.040 4.040 24 C -0.148 4.148 25 C -0.071 4.071 26 C -0.147 4.147 27 C -0.042 4.042 28 C -0.119 4.119 29 C -0.055 4.055 30 C -0.156 4.156 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.125 0.875 38 H 0.379 0.621 39 H -0.291 1.291 40 H -0.296 1.296 41 H 0.131 0.869 42 H 0.417 0.583 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.146 0.854 46 H 0.151 0.849 47 H 0.154 0.846 48 H 0.153 0.847 49 H 0.149 0.851 50 H 0.120 0.880 51 H 0.112 0.888 52 H 0.162 0.838 53 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 4.079 0.705 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.245 5.245 3 C -0.112 4.112 4 C 0.046 3.954 5 C -0.112 4.112 6 C -0.159 4.159 7 O -0.341 6.341 8 Si 0.644 3.356 9 C -0.085 4.085 10 C -0.151 4.151 11 C 0.352 3.648 12 O -0.452 6.452 13 N -0.346 5.346 14 C 0.022 3.978 15 H 0.121 0.879 16 C -0.165 4.165 17 C -0.687 4.687 18 H 0.206 0.794 19 S 2.686 3.314 20 O -0.969 6.969 21 O -0.964 6.964 22 C -0.753 4.753 23 C -0.059 4.059 24 C -0.167 4.167 25 C -0.088 4.088 26 C -0.166 4.166 27 C -0.061 4.061 28 C -0.159 4.159 29 C -0.074 4.074 30 C -0.176 4.176 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.142 0.858 38 H 0.227 0.773 39 H -0.218 1.218 40 H -0.223 1.223 41 H 0.149 0.851 42 H 0.256 0.744 43 H 0.133 0.867 44 H 0.121 0.879 45 H 0.164 0.836 46 H 0.168 0.832 47 H 0.171 0.829 48 H 0.171 0.829 49 H 0.167 0.833 50 H 0.139 0.861 51 H 0.131 0.869 52 H 0.180 0.820 53 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.928 2.812 1.153 7.565 hybrid contribution -0.158 1.281 -0.472 1.374 sum -7.086 4.093 0.681 8.212 Atomic orbital electron populations 1.22553 0.84366 1.03252 1.02022 1.59359 1.09466 1.14997 1.40665 1.22408 1.00494 0.86446 1.01858 1.18966 0.93843 0.92954 0.89611 1.20113 0.99375 0.96188 0.95521 1.24765 0.96410 1.02106 0.92594 1.86632 1.28169 1.63092 1.56160 0.94361 0.85083 0.78688 0.77431 1.21189 0.97317 0.98509 0.91517 1.19782 1.03548 0.99081 0.92671 1.18370 0.79427 0.83395 0.83593 1.90815 1.39204 1.29370 1.85844 1.45388 1.52470 1.32772 1.03949 1.21671 0.97789 0.93408 0.84967 0.87869 1.23308 1.01171 0.94683 0.97334 1.31668 1.08242 1.09829 1.18994 0.79361 1.05152 0.74062 0.73651 0.78553 1.93533 1.86193 1.50544 1.66635 1.93541 1.72257 1.48246 1.82350 1.30437 1.23883 1.02254 1.18759 1.21206 0.98047 0.94102 0.92550 1.21672 0.92733 1.01445 1.00856 1.21911 1.01220 0.93053 0.92657 1.21676 0.96469 0.97604 1.00809 1.21227 0.93089 0.99393 0.92365 1.23218 0.91229 1.04276 0.97137 1.21450 0.93260 0.91922 1.00730 1.21864 1.01956 1.01534 0.92247 0.90890 0.93817 0.90069 0.90256 0.92041 0.93944 0.85769 0.77261 1.21826 1.22326 0.85125 0.74355 0.86731 0.87875 0.83631 0.83157 0.82872 0.82916 0.83317 0.86123 0.86939 0.82028 0.83317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.12 9.34 127.69 1.19 1.07 16 2 N -0.52 0.79 4.20 -745.08 -3.13 -2.34 16 3 C 0.03 -0.10 9.32 127.69 1.19 1.09 16 4 C 0.14 -0.21 4.69 38.47 0.18 -0.03 16 5 C -0.11 -0.05 5.27 -19.78 -0.10 -0.16 16 6 C -0.05 -0.07 2.33 71.24 0.17 0.10 16 7 O -0.53 -2.03 12.88 -148.98 -1.92 -3.95 16 8 Si 0.74 1.54 30.23 68.60 2.07 3.61 16 9 C -0.07 -0.11 8.19 22.50 0.18 0.07 16 10 C -0.15 0.16 5.88 -20.08 -0.12 0.04 16 11 C 0.56 0.80 7.76 86.69 0.67 1.47 16 12 O -0.57 -5.94 15.94 -4.01 -0.06 -6.01 16 13 N -0.69 4.20 5.21 -443.22 -2.31 1.89 16 14 C 0.13 -0.64 4.32 45.51 0.20 -0.44 16 15 H 0.10 -0.09 7.46 -2.39 -0.02 -0.11 16 16 C -0.13 0.80 7.44 31.12 0.23 1.03 16 17 C -0.57 4.77 4.19 31.12 0.13 4.90 16 18 H 0.19 -2.87 8.14 -2.39 -0.02 -2.89 16 19 S 2.50 1.36 5.13 -56.49 -0.29 1.07 16 20 O -0.97 -6.92 17.13 -127.65 -2.19 -9.10 16 21 O -0.97 -6.82 16.31 -127.65 -2.08 -8.90 16 22 C -0.67 -0.26 5.66 22.27 0.13 -0.14 16 23 C -0.04 0.00 9.47 22.27 0.21 0.21 16 24 C -0.15 0.35 10.05 22.27 0.22 0.57 16 25 C -0.07 0.26 10.05 22.27 0.22 0.48 16 26 C -0.15 0.45 10.05 22.27 0.22 0.67 16 27 C -0.04 0.04 9.47 22.27 0.21 0.25 16 28 C -0.12 0.97 7.41 31.12 0.23 1.20 16 29 C -0.05 0.38 9.53 22.50 0.21 0.60 16 30 C -0.16 0.88 8.57 22.36 0.19 1.08 16 31 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.04 -0.32 7.09 -2.39 -0.02 -0.34 16 33 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 34 H 0.08 -0.29 8.14 -2.38 -0.02 -0.31 16 35 H 0.06 -0.03 8.12 -2.39 -0.02 -0.05 16 36 H 0.04 -0.24 7.45 -2.39 -0.02 -0.26 16 37 H 0.12 0.14 7.77 -2.39 -0.02 0.12 16 38 H 0.38 -0.43 8.70 -74.06 -0.64 -1.07 16 39 H -0.29 -2.21 6.69 99.48 0.67 -1.55 16 40 H -0.30 -2.61 7.11 99.48 0.71 -1.90 16 41 H 0.13 0.56 4.43 -2.91 -0.01 0.54 16 42 H 0.42 -5.45 6.72 -92.71 -0.62 -6.07 16 43 H 0.11 -0.61 7.44 -2.39 -0.02 -0.63 16 44 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 45 H 0.15 -0.28 7.57 -2.91 -0.02 -0.31 16 46 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16 47 H 0.15 -1.33 8.06 -2.91 -0.02 -1.36 16 48 H 0.15 -1.19 8.06 -2.91 -0.02 -1.21 16 49 H 0.15 -0.52 7.57 -2.91 -0.02 -0.55 16 50 H 0.12 -1.45 8.14 -2.39 -0.02 -1.47 16 51 H 0.11 -0.90 8.10 -2.38 -0.02 -0.92 16 52 H 0.16 -2.36 6.39 -2.91 -0.02 -2.38 16 53 H 0.15 -1.40 7.01 -2.91 -0.02 -1.42 16 Total: 0.00 -32.05 444.67 -4.43 -36.48 By element: Atomic # 1 Polarization: -26.51 SS G_CDS: -0.30 Total: -26.82 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.78 Total: 14.07 kcal Atomic # 7 Polarization: 4.99 SS G_CDS: -5.44 Total: -0.45 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -6.25 Total: -27.96 kcal Atomic # 14 Polarization: 1.54 SS G_CDS: 2.07 Total: 3.61 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -0.29 Total: 1.07 kcal Total: -32.05 -4.43 -36.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_13422196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.716 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds