Wall clock time and date at job start Sat Mar 6 2021 17:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47169 * 2 1 4 4 C 1.50698 * 109.47183 * 239.99919 * 2 1 3 5 5 C 1.32697 * 124.68370 * 300.02683 * 4 2 1 6 6 C 1.44506 * 113.09958 * 180.02562 * 5 4 2 7 7 C 1.47043 * 123.49412 * 180.02562 * 6 5 4 8 8 O 1.21652 * 120.00095 * 179.97438 * 7 6 5 9 9 N 1.34780 * 119.99882 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00150 * 180.02562 * 9 7 6 11 11 H 1.08996 * 112.84552 * 334.66604 * 10 9 7 12 12 C 1.53782 * 113.61667 * 105.86228 * 10 9 7 13 13 C 1.54044 * 86.98590 * 89.15914 * 12 10 9 14 14 H 1.08997 * 113.61519 * 270.88381 * 13 12 10 15 15 S 1.81401 * 113.69408 * 139.98643 * 13 12 10 16 16 O 1.42097 * 110.54364 * 194.09153 * 15 13 12 17 17 O 1.42099 * 110.54301 * 330.84855 * 15 13 12 18 18 C 1.76205 * 104.44640 * 82.46859 * 15 13 12 19 19 C 1.38230 * 120.00233 * 269.72776 * 18 15 13 20 20 C 1.38234 * 120.00002 * 179.78878 * 19 18 15 21 21 C 1.38228 * 120.00216 * 0.46449 * 20 19 18 22 22 C 1.38238 * 119.99861 * 359.76575 * 21 20 19 23 23 C 1.38229 * 120.00128 * 0.02562 * 22 21 20 24 24 C 1.53784 * 113.61520 * 203.47030 * 10 9 7 25 25 C 1.36221 * 113.01600 * 359.97438 * 6 5 4 26 26 Cl 1.73596 * 124.60673 * 179.97438 * 25 6 5 27 27 S 1.70448 * 110.78865 * 0.02562 * 25 6 5 28 28 H 0.96704 * 114.00469 * 60.00095 * 1 2 3 29 29 H 1.09001 * 109.46870 * 119.99592 * 2 1 3 30 30 H 1.48490 * 110.00293 * 59.99747 * 3 2 1 31 31 H 1.48503 * 110.00102 * 181.32231 * 3 2 1 32 32 H 1.08000 * 123.44801 * 359.97438 * 5 4 2 33 33 H 0.97000 * 119.99773 * 359.97438 * 9 7 6 34 34 H 1.08995 * 113.61364 * 203.66488 * 12 10 9 35 35 H 1.09005 * 113.60917 * 334.56658 * 12 10 9 36 36 H 1.08004 * 119.99649 * 359.97438 * 19 18 15 37 37 H 1.08004 * 119.99670 * 180.25103 * 20 19 18 38 38 H 1.07994 * 120.00421 * 179.78955 * 21 20 19 39 39 H 1.08001 * 120.00419 * 179.97438 * 22 21 20 40 40 H 1.08007 * 120.00531 * 179.97438 * 23 22 21 41 41 H 1.08999 * 113.61386 * 25.42659 * 24 10 9 42 42 H 1.08998 * 113.61393 * 156.33588 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6682 -1.9755 -1.5322 6 6 2.2775 -2.4013 -2.7715 7 6 2.1343 -3.7571 -3.3223 8 8 2.6752 -4.0472 -4.3726 9 7 1.4030 -4.6782 -2.6640 10 6 1.2608 -6.0292 -3.2124 11 1 1.3872 -6.0621 -4.2945 12 6 2.0865 -7.0883 -2.4632 13 6 0.8637 -7.2746 -1.5451 14 1 0.8610 -6.6100 -0.6812 15 16 0.5400 -9.0042 -1.1043 16 8 -0.7573 -9.1408 -0.5409 17 8 0.9860 -9.8737 -2.1360 18 6 1.6334 -9.3275 0.2392 19 6 2.9039 -9.8142 -0.0054 20 6 3.7631 -10.0637 1.0483 21 6 3.3486 -9.8355 2.3471 22 6 2.0765 -9.3533 2.5920 23 6 1.2187 -9.0997 1.5381 24 6 0.0059 -6.7666 -2.7160 25 6 2.9973 -1.4161 -3.3771 26 17 3.8526 -1.5995 -4.8765 27 16 2.9453 0.0210 -2.4619 28 1 -0.3934 0.4417 -0.7651 29 1 1.7922 -0.5138 0.8900 30 1 1.5615 2.4679 1.2084 31 1 3.5346 1.7703 -0.0322 32 1 1.0616 -2.6211 -0.9145 33 1 0.9714 -4.4467 -1.8267 34 1 2.3187 -7.9669 -3.0650 35 1 2.9593 -6.6807 -1.9530 36 1 3.2262 -9.9968 -1.0199 37 1 4.7572 -10.4401 0.8570 38 1 4.0187 -10.0336 3.1705 39 1 1.7524 -9.1753 3.6067 40 1 0.2245 -8.7233 1.7294 41 1 -0.8000 -6.0997 -2.4097 42 1 -0.3297 -7.5575 -3.3868 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12550010_13431040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:58:16 Heat of formation + Delta-G solvation = -36.546165 kcal Electronic energy + Delta-G solvation = -31653.790590 eV Core-core repulsion = 27040.023012 eV Total energy + Delta-G solvation = -4613.767577 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 414.024 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.53177 -40.15323 -39.89891 -38.84477 -38.11932 -37.92478 -37.05490 -36.95804 -34.39652 -32.41081 -32.10982 -31.77861 -27.73567 -27.21590 -26.99250 -25.42506 -24.22252 -23.81968 -22.44906 -21.18149 -20.99288 -19.93766 -19.56637 -19.08107 -18.26315 -18.08763 -17.75964 -17.07723 -17.03440 -16.89848 -16.61354 -16.20592 -16.08052 -15.82761 -15.71311 -15.62786 -15.23003 -14.90746 -14.62000 -14.59478 -14.39733 -14.29456 -14.16637 -14.09288 -13.86802 -13.79830 -13.30934 -13.09400 -13.07506 -12.99641 -12.60831 -12.48367 -12.35146 -12.32286 -12.15920 -12.13067 -11.99448 -11.81752 -11.29444 -10.96133 -10.77123 -10.46239 -10.29396 -10.13454 -9.99294 -9.78947 -5.35505 -1.02453 -0.68979 -0.29290 -0.24555 0.20512 0.34645 0.58604 0.97191 1.00984 1.38338 1.71739 1.74321 1.95455 2.13312 2.34311 2.61028 2.80047 2.96899 3.06191 3.31381 3.32038 3.37953 3.57408 3.69975 3.76027 3.76653 3.81397 3.91310 4.14376 4.22178 4.23069 4.24230 4.26592 4.32733 4.40812 4.51170 4.58276 4.58858 4.63597 4.74574 4.80268 4.82712 4.97856 5.14399 5.27849 5.30771 5.73431 6.25166 6.28760 7.06587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.025 4.025 3 Si 0.649 3.351 4 C -0.236 4.236 5 C -0.072 4.072 6 C -0.162 4.162 7 C 0.580 3.420 8 O -0.512 6.512 9 N -0.709 5.709 10 C 0.137 3.863 11 H 0.119 0.881 12 C -0.124 4.124 13 C -0.604 4.604 14 H 0.154 0.846 15 S 2.500 3.500 16 O -0.934 6.934 17 O -0.929 6.929 18 C -0.659 4.659 19 C -0.022 4.022 20 C -0.140 4.140 21 C -0.065 4.065 22 C -0.140 4.140 23 C -0.026 4.026 24 C -0.117 4.117 25 C -0.113 4.113 26 Cl 0.029 6.971 27 S 0.241 5.759 28 H 0.383 0.617 29 H 0.128 0.872 30 H -0.228 1.228 31 H -0.233 1.233 32 H 0.157 0.843 33 H 0.402 0.598 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.141 0.859 41 H 0.099 0.901 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 5.601 3.345 6.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.138 4.138 3 Si 0.548 3.452 4 C -0.353 4.353 5 C -0.101 4.101 6 C -0.180 4.180 7 C 0.366 3.634 8 O -0.387 6.387 9 N -0.361 5.361 10 C 0.031 3.969 11 H 0.137 0.863 12 C -0.163 4.163 13 C -0.713 4.713 14 H 0.172 0.828 15 S 2.681 3.319 16 O -0.931 6.931 17 O -0.927 6.927 18 C -0.745 4.745 19 C -0.041 4.041 20 C -0.159 4.159 21 C -0.083 4.083 22 C -0.159 4.159 23 C -0.045 4.045 24 C -0.156 4.156 25 C -0.260 4.260 26 Cl 0.058 6.942 27 S 0.506 5.494 28 H 0.231 0.769 29 H 0.145 0.855 30 H -0.150 1.150 31 H -0.157 1.157 32 H 0.174 0.826 33 H 0.237 0.763 34 H 0.135 0.865 35 H 0.111 0.889 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.118 0.882 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.595 6.515 2.878 7.299 hybrid contribution -0.035 -1.605 1.343 2.093 sum 1.561 4.910 4.220 6.660 Atomic orbital electron populations 1.86538 1.16271 1.81635 1.49325 1.24428 0.85420 1.09159 0.94792 0.95042 0.82388 0.77388 0.90374 1.24821 1.07890 0.99294 1.03287 1.20983 0.99357 0.95062 0.94669 1.20164 1.04879 0.95359 0.97631 1.17386 0.78664 0.83352 0.84012 1.90896 1.46023 1.80036 1.21788 1.45453 1.53196 1.10850 1.26575 1.21652 0.94638 0.80753 0.99907 0.86298 1.23305 0.95067 1.01368 0.96596 1.31837 1.07979 1.23916 1.07599 0.82796 1.05398 0.74711 0.77233 0.74582 1.93586 1.36407 1.85376 1.77727 1.93591 1.82099 1.60584 1.56377 1.30528 1.12186 1.16978 1.14846 1.20995 0.90989 0.91647 1.00500 1.21371 1.00474 1.01267 0.92776 1.21571 0.95860 0.93573 0.97298 1.21359 0.94286 1.00661 0.99615 1.20995 0.99255 0.93320 0.90946 1.23071 0.97214 1.01297 0.94023 1.25552 1.02748 1.00922 0.96800 1.98449 1.73106 1.97042 1.25624 1.83382 1.46526 1.08519 1.11004 0.76902 0.85517 1.15044 1.15736 0.82583 0.76298 0.86480 0.88911 0.84030 0.84821 0.85047 0.84852 0.84119 0.88200 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.47 12.85 -35.23 -0.45 1.01 16 2 C -0.02 0.08 2.95 36.00 0.11 0.18 16 3 Si 0.65 -2.03 30.91 -169.99 -5.25 -7.29 16 4 C -0.24 0.57 5.68 -36.20 -0.21 0.37 16 5 C -0.07 0.15 9.71 -39.00 -0.38 -0.23 16 6 C -0.16 -0.04 5.98 -104.59 -0.63 -0.66 16 7 C 0.58 0.78 7.79 -12.69 -0.10 0.68 16 8 O -0.51 -2.41 14.53 5.23 0.08 -2.34 16 9 N -0.71 1.25 5.24 -54.21 -0.28 0.96 16 10 C 0.14 -0.25 4.30 -67.12 -0.29 -0.53 16 11 H 0.12 -0.07 7.50 -51.93 -0.39 -0.46 16 12 C -0.12 0.29 7.46 -25.78 -0.19 0.10 16 13 C -0.60 1.82 4.21 -25.78 -0.11 1.71 16 14 H 0.15 -0.83 8.14 -51.93 -0.42 -1.25 16 15 S 2.50 1.08 5.13 -107.50 -0.55 0.53 16 16 O -0.93 -3.34 17.13 -57.54 -0.99 -4.32 16 17 O -0.93 -2.91 16.31 -57.54 -0.94 -3.85 16 18 C -0.66 -0.38 5.66 -39.58 -0.22 -0.61 16 19 C -0.02 -0.01 9.47 -39.59 -0.37 -0.38 16 20 C -0.14 0.06 10.05 -39.59 -0.40 -0.34 16 21 C -0.06 0.05 10.05 -39.58 -0.40 -0.34 16 22 C -0.14 0.08 10.05 -39.58 -0.40 -0.32 16 23 C -0.03 -0.01 9.47 -39.58 -0.37 -0.38 16 24 C -0.12 0.36 7.41 -25.92 -0.19 0.17 16 25 C -0.11 -0.09 6.87 30.01 0.21 0.12 16 26 Cl 0.03 0.07 27.20 -51.86 -1.41 -1.34 16 27 S 0.24 -0.43 20.17 -107.50 -2.17 -2.60 16 28 H 0.38 -2.41 8.70 45.56 0.40 -2.02 16 29 H 0.13 -0.41 7.96 -51.93 -0.41 -0.82 16 30 H -0.23 0.07 7.11 56.52 0.40 0.47 16 31 H -0.23 0.26 7.11 56.52 0.40 0.66 16 32 H 0.16 -0.66 7.10 -52.49 -0.37 -1.03 16 33 H 0.40 -1.73 7.25 -40.82 -0.30 -2.02 16 34 H 0.12 -0.29 7.44 -51.93 -0.39 -0.68 16 35 H 0.09 -0.23 8.14 -51.93 -0.42 -0.66 16 36 H 0.14 -0.14 7.56 -52.48 -0.40 -0.54 16 37 H 0.13 -0.33 8.06 -52.48 -0.42 -0.75 16 38 H 0.13 -0.40 8.06 -52.49 -0.42 -0.82 16 39 H 0.13 -0.35 8.06 -52.49 -0.42 -0.77 16 40 H 0.14 -0.16 7.57 -52.48 -0.40 -0.56 16 41 H 0.10 -0.44 8.14 -51.93 -0.42 -0.86 16 42 H 0.11 -0.40 8.10 -51.93 -0.42 -0.82 16 LS Contribution 398.54 15.07 6.01 6.01 Total: 0.00 -12.30 398.54 -14.32 -26.62 By element: Atomic # 1 Polarization: -8.53 SS G_CDS: -4.41 Total: -12.94 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -3.94 Total: -0.46 kcal Atomic # 7 Polarization: 1.25 SS G_CDS: -0.28 Total: 0.96 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -2.30 Total: -9.50 kcal Atomic # 14 Polarization: -2.03 SS G_CDS: -5.25 Total: -7.29 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.72 Total: -2.06 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -1.41 Total: -1.34 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -12.30 -14.32 -26.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_13431040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.926 kcal (2) G-P(sol) polarization free energy of solvation -12.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds