Wall clock time and date at job start Sat Mar 6 2021 17:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47169 * 2 1 4 4 C 1.50698 * 109.47183 * 239.99919 * 2 1 3 5 5 C 1.32697 * 124.68370 * 300.02683 * 4 2 1 6 6 C 1.44506 * 113.09958 * 180.02562 * 5 4 2 7 7 C 1.47043 * 123.49412 * 180.02562 * 6 5 4 8 8 O 1.21652 * 120.00095 * 179.97438 * 7 6 5 9 9 N 1.34780 * 119.99882 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00150 * 180.02562 * 9 7 6 11 11 H 1.08996 * 112.84552 * 334.66604 * 10 9 7 12 12 C 1.53782 * 113.61667 * 105.86228 * 10 9 7 13 13 C 1.54044 * 86.98590 * 89.15914 * 12 10 9 14 14 H 1.08997 * 113.61519 * 270.88381 * 13 12 10 15 15 S 1.81401 * 113.69408 * 139.98643 * 13 12 10 16 16 O 1.42097 * 110.54364 * 194.09153 * 15 13 12 17 17 O 1.42099 * 110.54301 * 330.84855 * 15 13 12 18 18 C 1.76205 * 104.44640 * 82.46859 * 15 13 12 19 19 C 1.38230 * 120.00233 * 269.72776 * 18 15 13 20 20 C 1.38234 * 120.00002 * 179.78878 * 19 18 15 21 21 C 1.38228 * 120.00216 * 0.46449 * 20 19 18 22 22 C 1.38238 * 119.99861 * 359.76575 * 21 20 19 23 23 C 1.38229 * 120.00128 * 0.02562 * 22 21 20 24 24 C 1.53784 * 113.61520 * 203.47030 * 10 9 7 25 25 C 1.36221 * 113.01600 * 359.97438 * 6 5 4 26 26 Cl 1.73596 * 124.60673 * 179.97438 * 25 6 5 27 27 S 1.70448 * 110.78865 * 0.02562 * 25 6 5 28 28 H 0.96704 * 114.00469 * 60.00095 * 1 2 3 29 29 H 1.09001 * 109.46870 * 119.99592 * 2 1 3 30 30 H 1.48490 * 110.00293 * 59.99747 * 3 2 1 31 31 H 1.48503 * 110.00102 * 181.32231 * 3 2 1 32 32 H 1.08000 * 123.44801 * 359.97438 * 5 4 2 33 33 H 0.97000 * 119.99773 * 359.97438 * 9 7 6 34 34 H 1.08995 * 113.61364 * 203.66488 * 12 10 9 35 35 H 1.09005 * 113.60917 * 334.56658 * 12 10 9 36 36 H 1.08004 * 119.99649 * 359.97438 * 19 18 15 37 37 H 1.08004 * 119.99670 * 180.25103 * 20 19 18 38 38 H 1.07994 * 120.00421 * 179.78955 * 21 20 19 39 39 H 1.08001 * 120.00419 * 179.97438 * 22 21 20 40 40 H 1.08007 * 120.00531 * 179.97438 * 23 22 21 41 41 H 1.08999 * 113.61386 * 25.42659 * 24 10 9 42 42 H 1.08998 * 113.61393 * 156.33588 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.6682 -1.9755 -1.5322 6 6 2.2775 -2.4013 -2.7715 7 6 2.1343 -3.7571 -3.3223 8 8 2.6752 -4.0472 -4.3726 9 7 1.4030 -4.6782 -2.6640 10 6 1.2608 -6.0292 -3.2124 11 1 1.3872 -6.0621 -4.2945 12 6 2.0865 -7.0883 -2.4632 13 6 0.8637 -7.2746 -1.5451 14 1 0.8610 -6.6100 -0.6812 15 16 0.5400 -9.0042 -1.1043 16 8 -0.7573 -9.1408 -0.5409 17 8 0.9860 -9.8737 -2.1360 18 6 1.6334 -9.3275 0.2392 19 6 2.9039 -9.8142 -0.0054 20 6 3.7631 -10.0637 1.0483 21 6 3.3486 -9.8355 2.3471 22 6 2.0765 -9.3533 2.5920 23 6 1.2187 -9.0997 1.5381 24 6 0.0059 -6.7666 -2.7160 25 6 2.9973 -1.4161 -3.3771 26 17 3.8526 -1.5995 -4.8765 27 16 2.9453 0.0210 -2.4619 28 1 -0.3934 0.4417 -0.7651 29 1 1.7922 -0.5138 0.8900 30 1 1.5615 2.4679 1.2084 31 1 3.5346 1.7703 -0.0322 32 1 1.0616 -2.6211 -0.9145 33 1 0.9714 -4.4467 -1.8267 34 1 2.3187 -7.9669 -3.0650 35 1 2.9593 -6.6807 -1.9530 36 1 3.2262 -9.9968 -1.0199 37 1 4.7572 -10.4401 0.8570 38 1 4.0187 -10.0336 3.1705 39 1 1.7524 -9.1753 3.6067 40 1 0.2245 -8.7233 1.7294 41 1 -0.8000 -6.0997 -2.4097 42 1 -0.3297 -7.5575 -3.3868 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_13431040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:58:14 Heat of formation + Delta-G solvation = -39.565281 kcal Electronic energy + Delta-G solvation = -31653.921508 eV Core-core repulsion = 27040.023012 eV Total energy + Delta-G solvation = -4613.898496 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 414.024 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.48791 -40.06687 -39.79239 -38.72742 -38.23105 -37.94190 -37.08314 -36.93282 -34.36909 -32.33375 -32.02745 -31.64166 -27.65623 -27.02292 -26.81550 -25.34266 -24.15297 -23.74005 -22.32395 -21.08507 -20.91330 -19.91052 -19.47646 -19.04044 -18.18991 -17.92470 -17.64351 -17.00432 -16.98039 -16.87989 -16.45397 -16.13859 -16.00404 -15.72142 -15.68747 -15.54143 -15.10244 -14.80706 -14.53189 -14.51992 -14.34805 -14.20795 -14.05268 -13.98930 -13.75857 -13.72567 -13.26182 -13.24301 -13.12907 -12.90653 -12.58718 -12.40621 -12.24771 -12.21481 -12.09300 -12.00030 -11.86098 -11.77132 -11.24119 -10.99244 -10.59599 -10.39192 -10.25439 -10.07309 -9.89088 -9.66622 -5.12583 -1.00578 -0.63582 -0.20206 -0.19627 0.26826 0.48053 0.71094 1.04140 1.19580 1.57122 1.76639 1.90575 2.03920 2.13026 2.41124 2.70441 2.88979 3.07613 3.27463 3.36484 3.53257 3.59904 3.79634 3.81539 3.86894 3.88759 3.92485 4.07302 4.34617 4.35572 4.39877 4.44606 4.47173 4.48849 4.54798 4.68360 4.71935 4.78302 4.82462 4.89640 4.92653 4.96767 5.05615 5.24446 5.36587 5.40886 5.83399 6.40566 6.70888 7.10094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.017 4.017 3 Si 0.708 3.292 4 C -0.228 4.228 5 C -0.068 4.068 6 C -0.167 4.167 7 C 0.575 3.425 8 O -0.554 6.554 9 N -0.692 5.692 10 C 0.132 3.868 11 H 0.104 0.896 12 C -0.126 4.126 13 C -0.575 4.575 14 H 0.186 0.814 15 S 2.501 3.499 16 O -0.971 6.971 17 O -0.966 6.966 18 C -0.666 4.666 19 C -0.041 4.041 20 C -0.149 4.149 21 C -0.071 4.071 22 C -0.147 4.147 23 C -0.042 4.042 24 C -0.117 4.117 25 C -0.138 4.138 26 Cl 0.003 6.997 27 S 0.263 5.737 28 H 0.399 0.601 29 H 0.135 0.865 30 H -0.267 1.267 31 H -0.261 1.261 32 H 0.182 0.818 33 H 0.417 0.583 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 6.395 5.066 8.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.131 4.131 3 Si 0.611 3.389 4 C -0.346 4.346 5 C -0.096 4.096 6 C -0.186 4.186 7 C 0.362 3.638 8 O -0.433 6.433 9 N -0.345 5.345 10 C 0.025 3.975 11 H 0.122 0.878 12 C -0.166 4.166 13 C -0.688 4.688 14 H 0.204 0.796 15 S 2.687 3.313 16 O -0.968 6.968 17 O -0.963 6.963 18 C -0.754 4.754 19 C -0.059 4.059 20 C -0.168 4.168 21 C -0.089 4.089 22 C -0.166 4.166 23 C -0.061 4.061 24 C -0.157 4.157 25 C -0.285 4.285 26 Cl 0.032 6.968 27 S 0.528 5.472 28 H 0.249 0.751 29 H 0.152 0.848 30 H -0.192 1.192 31 H -0.186 1.186 32 H 0.199 0.801 33 H 0.255 0.745 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.164 0.836 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.139 0.861 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.029 7.275 4.615 8.676 hybrid contribution 0.144 -1.766 0.881 1.979 sum 1.173 5.509 5.496 7.870 Atomic orbital electron populations 1.86516 1.16047 1.81941 1.50526 1.24384 0.85568 1.08551 0.94565 0.94308 0.79885 0.76205 0.88532 1.24944 1.07281 0.99258 1.03111 1.21137 0.99259 0.95414 0.93791 1.20287 1.05112 0.94756 0.98489 1.17642 0.78460 0.84092 0.83651 1.90877 1.47922 1.80799 1.23672 1.45322 1.52140 1.10303 1.26703 1.21642 0.95713 0.80826 0.99314 0.87788 1.23351 0.95448 1.01115 0.96643 1.31710 1.07673 1.20678 1.08699 0.79609 1.05128 0.73836 0.78485 0.73854 1.93533 1.38361 1.86658 1.78252 1.93539 1.82350 1.63056 1.57376 1.30462 1.12203 1.17727 1.14965 1.21202 0.91319 0.92238 1.01180 1.21672 1.01179 1.01037 0.92886 1.21910 0.96204 0.92951 0.97817 1.21682 0.94326 1.00166 1.00408 1.21238 0.99960 0.93824 0.91067 1.23206 0.97310 1.01466 0.93680 1.25804 1.03625 1.02502 0.96563 1.98432 1.73769 1.97258 1.27302 1.83315 1.46173 1.07220 1.10494 0.75078 0.84822 1.19230 1.18635 0.80084 0.74515 0.86726 0.88341 0.83649 0.83180 0.82862 0.82894 0.83288 0.86060 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 4.24 12.85 -148.98 -1.91 2.32 16 2 C -0.02 0.14 2.95 71.24 0.21 0.35 16 3 Si 0.71 -4.88 30.91 68.60 2.12 -2.76 16 4 C -0.23 1.50 5.68 24.51 0.14 1.64 16 5 C -0.07 0.42 9.71 22.70 0.22 0.64 16 6 C -0.17 0.01 5.98 -19.84 -0.12 -0.11 16 7 C 0.58 1.55 7.79 86.55 0.67 2.23 16 8 O -0.55 -5.94 14.53 -4.19 -0.06 -6.00 16 9 N -0.69 3.16 5.24 -443.65 -2.33 0.84 16 10 C 0.13 -0.51 4.30 45.52 0.20 -0.32 16 11 H 0.10 -0.02 7.50 -2.39 -0.02 -0.04 16 12 C -0.13 0.62 7.46 31.21 0.23 0.85 16 13 C -0.58 3.99 4.21 31.21 0.13 4.12 16 14 H 0.19 -2.48 8.14 -2.39 -0.02 -2.50 16 15 S 2.50 3.88 5.13 -56.49 -0.29 3.59 16 16 O -0.97 -7.76 17.13 -127.65 -2.19 -9.95 16 17 O -0.97 -7.61 16.31 -127.65 -2.08 -9.69 16 18 C -0.67 -1.05 5.66 22.27 0.13 -0.92 16 19 C -0.04 -0.05 9.47 22.27 0.21 0.16 16 20 C -0.15 0.17 10.05 22.27 0.22 0.40 16 21 C -0.07 0.18 10.05 22.27 0.22 0.41 16 22 C -0.15 0.28 10.05 22.27 0.22 0.50 16 23 C -0.04 -0.01 9.47 22.27 0.21 0.20 16 24 C -0.12 0.84 7.41 31.12 0.23 1.07 16 25 C -0.14 -0.25 6.87 67.35 0.46 0.21 16 26 Cl 0.00 0.02 27.20 -2.72 -0.07 -0.05 16 27 S 0.26 -1.07 20.17 -56.49 -1.14 -2.21 16 28 H 0.40 -5.95 8.70 -74.05 -0.64 -6.59 16 29 H 0.13 -1.19 7.96 -2.39 -0.02 -1.21 16 30 H -0.27 0.05 7.11 99.48 0.71 0.76 16 31 H -0.26 0.61 7.11 99.48 0.71 1.32 16 32 H 0.18 -2.13 7.10 -2.91 -0.02 -2.15 16 33 H 0.42 -4.58 7.25 -92.71 -0.67 -5.25 16 34 H 0.11 -0.46 7.44 -2.39 -0.02 -0.48 16 35 H 0.10 -0.56 8.14 -2.38 -0.02 -0.57 16 36 H 0.15 -0.11 7.56 -2.91 -0.02 -0.13 16 37 H 0.15 -0.81 8.06 -2.91 -0.02 -0.84 16 38 H 0.15 -1.17 8.06 -2.91 -0.02 -1.19 16 39 H 0.15 -1.02 8.06 -2.91 -0.02 -1.04 16 40 H 0.15 -0.35 7.57 -2.91 -0.02 -0.37 16 41 H 0.12 -1.34 8.14 -2.39 -0.02 -1.36 16 42 H 0.11 -0.84 8.10 -2.39 -0.02 -0.86 16 Total: 0.00 -30.47 398.54 -4.52 -34.99 By element: Atomic # 1 Polarization: -22.35 SS G_CDS: -0.17 Total: -22.52 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 3.60 Total: 11.43 kcal Atomic # 7 Polarization: 3.16 SS G_CDS: -2.33 Total: 0.84 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -6.24 Total: -23.31 kcal Atomic # 14 Polarization: -4.88 SS G_CDS: 2.12 Total: -2.76 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.43 Total: 1.38 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.07 Total: -0.05 kcal Total: -30.47 -4.52 -34.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_13431040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.571 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds