Wall clock time and date at job start Sat Mar 6 2021 17:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86294 * 109.47174 * 2 1 4 4 C 1.50697 * 109.46844 * 239.99610 * 2 1 3 5 5 C 1.34173 * 125.44448 * 300.31604 * 4 2 1 6 6 C 1.47020 * 105.95901 * 180.14348 * 5 4 2 7 7 C 1.47374 * 127.19756 * 179.83141 * 6 5 4 8 8 O 1.21619 * 119.99625 * 359.71214 * 7 6 5 9 9 N 1.34774 * 120.00556 * 179.70837 * 7 6 5 10 10 C 1.46496 * 120.00099 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.91109 * 23.75176 * 10 9 7 12 12 C 1.53787 * 113.61210 * 155.00440 * 10 9 7 13 13 C 1.53778 * 87.08035 * 89.11438 * 12 10 9 14 14 H 1.09004 * 113.61682 * 270.87724 * 13 12 10 15 15 S 1.81401 * 113.61050 * 140.06588 * 13 12 10 16 16 O 1.42093 * 110.54609 * 296.62051 * 15 13 12 17 17 O 1.42099 * 110.54502 * 73.37457 * 15 13 12 18 18 C 1.76205 * 104.44662 * 184.99707 * 15 13 12 19 19 C 1.38233 * 119.99930 * 269.72548 * 18 15 13 20 20 C 1.38235 * 119.99734 * 179.74620 * 19 18 15 21 21 C 1.38236 * 120.00234 * 0.54960 * 20 19 18 22 22 C 1.38233 * 119.99535 * 359.70730 * 21 20 19 23 23 C 1.38233 * 120.00542 * 0.02562 * 22 21 20 24 24 C 1.53778 * 87.08449 * 25.43264 * 13 12 10 25 25 C 1.36422 * 105.61059 * 359.56967 * 6 5 4 26 26 O 1.33648 * 108.39752 * 0.26578 * 25 6 5 27 27 H 0.96703 * 114.00287 * 59.99741 * 1 2 3 28 28 H 1.09005 * 109.46712 * 119.99964 * 2 1 3 29 29 H 1.48495 * 110.00197 * 298.68250 * 3 2 1 30 30 H 1.48500 * 110.00071 * 60.00332 * 3 2 1 31 31 H 1.08005 * 127.02184 * 359.97438 * 5 4 2 32 32 H 0.97002 * 119.99411 * 0.02562 * 9 7 6 33 33 H 1.08998 * 113.61103 * 203.66698 * 12 10 9 34 34 H 1.08997 * 113.61087 * 334.48007 * 12 10 9 35 35 H 1.07997 * 120.00604 * 0.02562 * 19 18 15 36 36 H 1.08005 * 120.00076 * 180.27486 * 20 19 18 37 37 H 1.08005 * 120.00272 * 179.72462 * 21 20 19 38 38 H 1.08003 * 119.99855 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.00435 * 179.97438 * 23 22 21 40 40 H 1.08993 * 113.61229 * 220.02023 * 24 13 12 41 41 H 1.09000 * 113.61263 * 89.11673 * 24 13 12 42 42 H 1.07996 * 125.79756 * 180.26021 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 -1.2304 5 6 1.6703 -1.9864 -1.5531 6 6 2.3686 -2.2331 -2.8232 7 6 2.3977 -3.4883 -3.5948 8 8 1.8018 -4.4669 -3.1867 9 7 3.0845 -3.5520 -4.7527 10 6 3.1129 -4.7996 -5.5199 11 1 2.2606 -5.4460 -5.3106 12 6 3.3760 -4.5938 -7.0210 13 6 4.8746 -4.6993 -6.6926 14 1 5.3351 -3.7435 -6.4424 15 16 5.8233 -5.6381 -7.9211 16 8 5.3825 -6.9882 -7.9661 17 8 5.9846 -4.8801 -9.1121 18 6 7.4470 -5.7335 -7.2434 19 6 8.3770 -4.7537 -7.5367 20 6 9.6492 -4.8258 -7.0008 21 6 9.9949 -5.8836 -6.1808 22 6 9.0665 -6.8661 -5.8918 23 6 7.7926 -6.7912 -6.4232 24 6 4.4665 -5.5273 -5.4627 25 6 2.9790 -1.0552 -3.1413 26 8 2.7058 -0.1660 -2.1817 27 1 -0.3934 0.4417 -0.7650 28 1 1.7922 -0.5139 0.8901 29 1 1.5879 2.4585 -1.2242 30 1 1.5615 2.4678 1.2085 31 1 1.0721 -2.6897 -0.9927 32 1 3.5600 -2.7716 -5.0780 33 1 3.0072 -5.4083 -7.6446 34 1 3.0757 -3.6118 -7.3863 35 1 8.1084 -3.9296 -8.1809 36 1 10.3745 -4.0580 -7.2264 37 1 10.9903 -5.9423 -5.7657 38 1 9.3366 -7.6928 -5.2514 39 1 7.0674 -7.5590 -6.1977 40 1 5.0479 -5.2982 -4.5697 41 1 4.3959 -6.5969 -5.6603 42 1 3.5808 -0.8726 -4.0192 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:58:19 Heat of formation + Delta-G solvation = -54.083907 kcal Electronic energy + Delta-G solvation = -29466.993002 eV Core-core repulsion = 25088.194045 eV Total energy + Delta-G solvation = -4378.798957 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.090 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.71918 -41.24659 -40.03895 -39.28567 -38.21212 -38.16608 -37.07163 -34.73960 -33.70440 -32.30880 -31.99940 -31.74116 -27.44827 -27.02261 -26.51166 -24.82082 -24.10289 -23.71196 -22.32762 -21.21315 -21.11550 -19.90698 -19.40661 -19.00741 -18.16460 -17.84713 -17.55307 -17.23806 -17.06811 -16.94698 -16.89261 -16.23691 -16.05561 -15.80290 -15.68278 -15.51392 -15.35857 -14.75327 -14.49531 -14.25737 -14.21014 -14.01915 -13.98595 -13.84028 -13.75894 -13.52418 -13.24307 -13.23642 -13.11861 -12.94817 -12.21924 -12.15863 -12.13834 -12.01576 -11.75451 -11.32483 -11.20976 -10.98903 -10.77724 -10.36534 -10.25700 -10.04358 -9.78504 -4.91259 -0.99361 -0.17551 0.25559 0.29745 0.80740 1.19297 1.53539 1.75359 1.77312 1.93106 1.97845 2.20651 2.43464 2.73749 2.90806 3.07901 3.20796 3.36458 3.45694 3.54763 3.55812 3.81355 3.88033 3.95262 3.97360 4.10320 4.31402 4.38504 4.41088 4.42160 4.47657 4.49489 4.52254 4.55458 4.71185 4.72571 4.82951 4.88801 4.90475 4.95473 5.08358 5.12868 5.27421 5.38891 5.39713 5.83192 5.86242 6.34789 6.43024 7.11126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.046 4.046 3 Si 0.793 3.207 4 C -0.050 4.050 5 C -0.151 4.151 6 C -0.269 4.269 7 C 0.592 3.408 8 O -0.581 6.581 9 N -0.692 5.692 10 C 0.130 3.870 11 H 0.099 0.901 12 C -0.119 4.119 13 C -0.573 4.573 14 H 0.192 0.808 15 S 2.500 3.500 16 O -0.968 6.968 17 O -0.971 6.971 18 C -0.665 4.665 19 C -0.041 4.041 20 C -0.146 4.146 21 C -0.071 4.071 22 C -0.149 4.149 23 C -0.041 4.041 24 C -0.126 4.126 25 C 0.068 3.932 26 O -0.164 6.164 27 H 0.391 0.609 28 H 0.148 0.852 29 H -0.286 1.286 30 H -0.290 1.290 31 H 0.143 0.857 32 H 0.419 0.581 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.502 6.585 1.450 9.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.154 4.154 3 Si 0.695 3.305 4 C -0.099 4.099 5 C -0.171 4.171 6 C -0.274 4.274 7 C 0.381 3.619 8 O -0.462 6.462 9 N -0.344 5.344 10 C 0.022 3.978 11 H 0.117 0.883 12 C -0.158 4.158 13 C -0.685 4.685 14 H 0.210 0.790 15 S 2.686 3.314 16 O -0.965 6.965 17 O -0.969 6.969 18 C -0.753 4.753 19 C -0.060 4.060 20 C -0.165 4.165 21 C -0.089 4.089 22 C -0.168 4.168 23 C -0.060 4.060 24 C -0.166 4.166 25 C -0.002 4.002 26 O -0.059 6.059 27 H 0.241 0.759 28 H 0.165 0.835 29 H -0.212 1.212 30 H -0.217 1.217 31 H 0.161 0.839 32 H 0.258 0.742 33 H 0.130 0.870 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 5.804 6.339 1.475 8.720 hybrid contribution -0.621 -0.289 -0.095 0.692 sum 5.183 6.050 1.380 8.085 Atomic orbital electron populations 1.86654 1.17525 1.80572 1.50058 1.24693 0.83457 1.13253 0.94004 0.93477 0.89773 0.70265 0.76942 1.22667 0.99591 0.93550 0.94052 1.22550 1.02082 0.96123 0.96325 1.21421 1.10035 0.95807 1.00120 1.17479 0.77584 0.86416 0.80433 1.90812 1.46347 1.38781 1.70241 1.45249 1.52486 1.14768 1.21887 1.21641 0.98657 0.86476 0.90994 0.88275 1.23222 0.88896 1.07129 0.96549 1.31659 1.08858 1.15054 1.12941 0.79040 1.05153 0.75019 0.75012 0.76240 1.93539 1.81674 1.34363 1.86972 1.93533 1.85803 1.73400 1.44117 1.30429 1.23345 1.05379 1.16128 1.21235 0.93347 0.96420 0.94977 1.21685 0.96897 0.99839 0.98084 1.21913 1.00356 0.92478 0.94110 1.21665 0.93485 1.00474 1.01163 1.21192 0.98005 0.94953 0.91819 1.23297 0.97284 1.00020 0.95977 1.25360 0.97135 0.85133 0.92596 1.83723 1.54277 1.40117 1.27832 0.75929 0.83500 1.21222 1.21721 0.83922 0.74231 0.86991 0.85846 0.83187 0.82842 0.82892 0.83267 0.83751 0.88002 0.86950 0.71928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.39 12.86 -148.98 -1.92 -2.31 16 2 C -0.05 0.13 2.97 71.24 0.21 0.34 16 3 Si 0.79 -3.63 32.09 68.60 2.20 -1.43 16 4 C -0.05 0.06 6.20 24.76 0.15 0.22 16 5 C -0.15 -0.46 10.87 23.65 0.26 -0.21 16 6 C -0.27 0.12 6.31 -18.99 -0.12 0.00 16 7 C 0.59 1.51 7.81 86.65 0.68 2.19 16 8 O -0.58 -7.63 16.58 -4.09 -0.07 -7.70 16 9 N -0.69 4.40 5.25 -443.34 -2.33 2.07 16 10 C 0.13 -0.61 4.32 45.52 0.20 -0.42 16 11 H 0.10 0.01 7.47 -2.39 -0.02 -0.01 16 12 C -0.12 0.99 7.42 31.12 0.23 1.23 16 13 C -0.57 4.96 4.19 31.12 0.13 5.09 16 14 H 0.19 -3.10 8.14 -2.38 -0.02 -3.12 16 15 S 2.50 0.98 5.09 -56.49 -0.29 0.69 16 16 O -0.97 -6.96 16.45 -127.65 -2.10 -9.06 16 17 O -0.97 -6.62 17.12 -127.65 -2.19 -8.80 16 18 C -0.67 -0.21 5.66 22.27 0.13 -0.09 16 19 C -0.04 0.05 9.47 22.27 0.21 0.26 16 20 C -0.15 0.47 10.05 22.27 0.22 0.69 16 21 C -0.07 0.26 10.05 22.27 0.22 0.48 16 22 C -0.15 0.32 10.05 22.27 0.22 0.54 16 23 C -0.04 0.00 9.47 22.27 0.21 0.21 16 24 C -0.13 0.79 7.44 31.12 0.23 1.02 16 25 C 0.07 -0.59 11.61 67.40 0.78 0.20 16 26 O -0.16 0.79 8.89 4.47 0.04 0.83 16 27 H 0.39 -1.96 8.70 -74.06 -0.64 -2.60 16 28 H 0.15 -0.77 7.96 -2.38 -0.02 -0.79 16 29 H -0.29 -0.10 7.11 99.48 0.71 0.60 16 30 H -0.29 -0.64 7.11 99.48 0.71 0.07 16 31 H 0.14 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.42 -6.27 7.67 -92.71 -0.71 -6.98 16 33 H 0.11 -0.88 8.10 -2.39 -0.02 -0.90 16 34 H 0.12 -1.58 8.14 -2.39 -0.02 -1.60 16 35 H 0.15 -0.59 7.57 -2.91 -0.02 -0.61 16 36 H 0.15 -1.23 8.06 -2.91 -0.02 -1.25 16 37 H 0.15 -1.32 8.06 -2.91 -0.02 -1.34 16 38 H 0.15 -0.92 8.06 -2.91 -0.02 -0.95 16 39 H 0.14 -0.24 7.57 -2.91 -0.02 -0.26 16 40 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 41 H 0.11 -0.57 7.54 -2.39 -0.02 -0.59 16 42 H 0.27 -5.40 7.47 -2.91 -0.02 -5.42 16 Total: 0.00 -36.69 379.15 -2.91 -39.60 By element: Atomic # 1 Polarization: -25.42 SS G_CDS: -0.23 Total: -25.65 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 3.97 Total: 11.75 kcal Atomic # 7 Polarization: 4.40 SS G_CDS: -2.33 Total: 2.07 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -6.23 Total: -27.04 kcal Atomic # 14 Polarization: -3.63 SS G_CDS: 2.20 Total: -1.43 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -0.29 Total: 0.69 kcal Total: -36.69 -2.91 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.482 kcal (2) G-P(sol) polarization free energy of solvation -36.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds