Wall clock time and date at job start Sat Mar 6 2021 17:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.38712 * 120.02639 * 284.71916 * 4 2 1 6 6 O 1.35904 * 120.05330 * 0.02562 * 5 4 2 7 7 C 1.42907 * 116.99574 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.46730 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00185 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99777 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99666 * 179.97438 * 10 8 7 12 12 H 1.08994 * 112.84974 * 334.65538 * 11 10 8 13 13 C 1.53773 * 113.61569 * 105.85940 * 11 10 8 14 14 C 1.54053 * 86.98763 * 89.15630 * 13 11 10 15 15 H 1.08990 * 113.61569 * 270.88485 * 14 13 11 16 16 S 1.81397 * 113.69531 * 139.98745 * 14 13 11 17 17 O 1.42101 * 110.54472 * 194.09625 * 16 14 13 18 18 O 1.42104 * 110.54661 * 330.84479 * 16 14 13 19 19 C 1.76198 * 104.44966 * 82.47005 * 16 14 13 20 20 C 1.38233 * 120.00032 * 269.72405 * 19 16 14 21 21 C 1.38235 * 119.99934 * 179.80711 * 20 19 16 22 22 C 1.38233 * 120.00109 * 0.40311 * 21 20 19 23 23 C 1.38238 * 120.00098 * 359.85106 * 22 21 20 24 24 C 1.38232 * 119.99691 * 359.96420 * 23 22 21 25 25 C 1.53780 * 113.60877 * 203.46550 * 11 10 8 26 26 C 1.38758 * 119.88880 * 179.75245 * 5 4 2 27 27 C 1.38119 * 119.94167 * 0.52164 * 26 5 4 28 28 C 1.38286 * 120.05861 * 359.73012 * 27 26 5 29 29 C 1.38167 * 120.03100 * 104.99624 * 4 2 1 30 30 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 31 31 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 32 32 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 33 33 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 34 34 H 1.08997 * 109.46648 * 299.99500 * 7 6 5 35 35 H 1.08992 * 109.47580 * 59.99726 * 7 6 5 36 36 H 0.96993 * 119.99725 * 359.97438 * 10 8 7 37 37 H 1.08999 * 113.61360 * 203.65871 * 13 11 10 38 38 H 1.09000 * 113.61930 * 334.56585 * 13 11 10 39 39 H 1.07994 * 120.00096 * 0.02562 * 20 19 16 40 40 H 1.08005 * 120.00377 * 180.22899 * 21 20 19 41 41 H 1.08004 * 120.00265 * 179.83217 * 22 21 20 42 42 H 1.07997 * 120.00101 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99981 * 180.02562 * 24 23 22 44 44 H 1.09002 * 113.61807 * 25.43488 * 25 11 10 45 45 H 1.09004 * 113.61249 * 156.33321 * 25 11 10 46 46 H 1.08003 * 120.02509 * 180.27445 * 26 5 4 47 47 H 1.07998 * 119.97330 * 179.74612 * 27 26 5 48 48 H 1.08001 * 119.94595 * 180.02562 * 28 27 26 49 49 H 1.07997 * 119.96994 * 359.97300 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.8750 -2.0943 -1.3046 6 8 1.3664 -2.8113 -0.2681 7 6 1.3402 -4.2327 -0.4136 8 6 0.7469 -4.8535 0.8249 9 8 0.3829 -4.1483 1.7419 10 7 0.6218 -6.1925 0.9137 11 6 0.0455 -6.7960 2.1179 12 1 0.1622 -6.1699 3.0024 13 6 -1.3860 -7.3211 1.9191 14 6 -0.7496 -8.6566 1.4896 15 1 -0.5384 -8.7162 0.4221 16 16 -1.6248 -10.1163 2.1171 17 8 -0.8244 -11.2807 1.9664 18 8 -2.2647 -9.8219 3.3513 19 6 -2.9536 -10.3529 0.9844 20 6 -4.1735 -9.7443 1.2132 21 6 -5.2147 -9.9267 0.3224 22 6 -5.0386 -10.7243 -0.7927 23 6 -3.8203 -11.3372 -1.0188 24 6 -2.7780 -11.1517 -0.1301 25 6 0.4697 -8.2577 2.3375 26 6 2.3336 -2.7452 -2.4410 27 6 2.8548 -2.0145 -3.4908 28 6 2.9147 -0.6352 -3.4124 29 6 2.4537 0.0160 -2.2834 30 1 -0.3934 0.4416 -0.7651 31 1 1.7924 -0.5138 0.8900 32 1 1.5877 2.4585 -1.2243 33 1 1.5613 2.4680 1.2084 34 1 0.7331 -4.4981 -1.2791 35 1 2.3557 -4.6023 -0.5550 36 1 0.9132 -6.7565 0.1804 37 1 -1.9589 -7.3879 2.8440 38 1 -1.9289 -6.8173 1.1193 39 1 -4.3120 -9.1236 2.0860 40 1 -6.1668 -9.4483 0.4992 41 1 -5.8530 -10.8690 -1.4873 42 1 -3.6829 -11.9607 -1.8899 43 1 -1.8260 -11.6301 -0.3069 44 1 1.4242 -8.5096 1.8754 45 1 0.4033 -8.5802 3.3767 46 1 2.2867 -3.8224 -2.5028 47 1 3.2156 -2.5208 -4.3739 48 1 3.3222 -0.0656 -4.2346 49 1 2.5014 1.0933 -2.2245 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:59:01 Heat of formation + Delta-G solvation = -74.825688 kcal Electronic energy + Delta-G solvation = -34904.962622 eV Core-core repulsion = 30085.962855 eV Total energy + Delta-G solvation = -4818.999767 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.122 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.72271 -41.08073 -40.07249 -39.53705 -38.41868 -38.22850 -37.59736 -37.09970 -34.57775 -32.74474 -32.34094 -32.03325 -31.26334 -29.58767 -27.06124 -26.75759 -26.64833 -24.22458 -23.75054 -23.65396 -22.62810 -21.92396 -21.13368 -19.94623 -19.52962 -19.13372 -18.48608 -18.20891 -17.81114 -17.44072 -17.10952 -17.01557 -16.97128 -16.88853 -16.53231 -16.10751 -15.81691 -15.64559 -15.59543 -15.44987 -15.32304 -15.02405 -14.79634 -14.52819 -14.26464 -14.19262 -14.04635 -13.90772 -13.78874 -13.70919 -13.43326 -13.27075 -13.25763 -13.14599 -13.04391 -12.52914 -12.25295 -12.19343 -12.11384 -12.02728 -11.87495 -11.79147 -11.68185 -11.27589 -11.05843 -10.53427 -10.40229 -10.28291 -10.07871 -9.96251 -9.20344 -4.95485 -1.02324 -0.21017 0.24943 0.26266 0.43420 1.29034 1.37704 1.41961 1.53984 1.76040 1.93550 2.40143 2.55135 2.67729 2.71403 2.87640 3.05192 3.34587 3.44057 3.46144 3.53242 3.72353 3.78680 3.85457 3.90945 3.91920 3.98297 4.06811 4.07098 4.14255 4.33101 4.35168 4.38338 4.38760 4.42177 4.46210 4.52040 4.55032 4.67243 4.67803 4.69792 4.79128 4.84808 4.92064 4.99326 5.05022 5.24082 5.29511 5.34744 5.36271 5.39152 5.54833 5.77036 5.82893 6.26705 6.43762 6.52871 7.07789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.081 4.081 3 Si 0.780 3.220 4 C -0.164 4.164 5 C 0.130 3.870 6 O -0.313 6.313 7 C 0.036 3.964 8 C 0.516 3.484 9 O -0.565 6.565 10 N -0.691 5.691 11 C 0.130 3.870 12 H 0.098 0.902 13 C -0.128 4.128 14 C -0.573 4.573 15 H 0.191 0.809 16 S 2.499 3.501 17 O -0.970 6.970 18 O -0.968 6.968 19 C -0.666 4.666 20 C -0.042 4.042 21 C -0.149 4.149 22 C -0.070 4.070 23 C -0.146 4.146 24 C -0.041 4.041 25 C -0.116 4.116 26 C -0.211 4.211 27 C -0.075 4.075 28 C -0.155 4.155 29 C -0.089 4.089 30 H 0.381 0.619 31 H 0.097 0.903 32 H -0.266 1.266 33 H -0.309 1.309 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.424 0.576 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.144 0.856 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.151 0.849 44 H 0.125 0.875 45 H 0.111 0.889 46 H 0.156 0.844 47 H 0.153 0.847 48 H 0.149 0.851 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.205 -1.182 -10.941 11.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.189 4.189 3 Si 0.684 3.316 4 C -0.165 4.165 5 C 0.085 3.915 6 O -0.226 6.226 7 C -0.042 4.042 8 C 0.303 3.697 9 O -0.442 6.442 10 N -0.346 5.346 11 C 0.023 3.977 12 H 0.116 0.884 13 C -0.168 4.168 14 C -0.686 4.686 15 H 0.209 0.791 16 S 2.685 3.315 17 O -0.967 6.967 18 O -0.966 6.966 19 C -0.754 4.754 20 C -0.060 4.060 21 C -0.168 4.168 22 C -0.088 4.088 23 C -0.165 4.165 24 C -0.060 4.060 25 C -0.155 4.155 26 C -0.229 4.229 27 C -0.093 4.093 28 C -0.173 4.173 29 C -0.106 4.106 30 H 0.230 0.770 31 H 0.115 0.885 32 H -0.192 1.192 33 H -0.237 1.237 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.262 0.738 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.168 0.832 44 H 0.144 0.856 45 H 0.130 0.870 46 H 0.174 0.826 47 H 0.171 0.829 48 H 0.167 0.833 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.911 -0.669 -8.828 9.679 hybrid contribution -1.667 -0.439 -1.179 2.088 sum 2.244 -1.107 -10.007 10.315 Atomic orbital electron populations 1.86650 1.18962 1.80327 1.49685 1.25177 0.83248 1.12242 0.98223 0.94064 0.89913 0.71083 0.76525 1.19695 1.06751 0.91512 0.98546 1.19045 0.94156 0.91026 0.87306 1.86190 1.78157 1.18647 1.39576 1.22717 1.04732 0.79946 0.96819 1.20545 0.78037 0.82796 0.88337 1.90798 1.49720 1.62440 1.41288 1.45263 1.63539 1.05533 1.20280 1.21626 0.93105 0.93937 0.89022 0.88395 1.23351 0.97858 0.91294 1.04254 1.31711 1.09828 1.13254 1.13773 0.79122 1.05171 0.74814 0.76789 0.74712 1.93535 1.69942 1.46490 1.86752 1.93541 1.75086 1.86135 1.41792 1.30446 1.16153 1.12761 1.16024 1.21190 0.91556 0.95104 0.98198 1.21669 1.00042 1.00021 0.95069 1.21918 0.97882 0.92655 0.96374 1.21690 0.93281 1.00844 1.00670 1.21243 1.00789 0.92878 0.91084 1.23199 0.97362 0.94040 1.00909 1.21595 1.05571 1.01869 0.93884 1.21397 0.95444 0.94150 0.98272 1.21398 1.02055 0.95169 0.98655 1.21185 0.96490 1.00479 0.92491 0.77028 0.88472 1.19163 1.23731 0.86050 0.85491 0.73764 0.87028 0.88207 0.83828 0.83262 0.82827 0.82776 0.83154 0.85629 0.87025 0.82615 0.82895 0.83335 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -5.33 12.88 -148.98 -1.92 -7.25 16 2 C -0.08 -0.47 2.38 71.23 0.17 -0.30 16 3 Si 0.78 0.81 30.25 68.60 2.08 2.88 16 4 C -0.16 -0.54 5.27 -19.77 -0.10 -0.64 16 5 C 0.13 0.39 6.66 22.51 0.15 0.54 16 6 O -0.31 -1.90 9.00 -73.43 -0.66 -2.56 16 7 C 0.04 -0.14 5.22 71.24 0.37 0.23 16 8 C 0.52 0.64 7.91 87.66 0.69 1.33 16 9 O -0.57 -7.76 16.12 16.01 0.26 -7.51 16 10 N -0.69 4.79 5.26 -440.05 -2.32 2.47 16 11 C 0.13 -0.56 4.30 45.51 0.20 -0.37 16 12 H 0.10 0.06 7.50 -2.39 -0.02 0.04 16 13 C -0.13 0.65 7.46 31.21 0.23 0.88 16 14 C -0.57 4.48 4.21 31.21 0.13 4.61 16 15 H 0.19 -2.88 8.14 -2.39 -0.02 -2.90 16 16 S 2.50 3.01 5.13 -56.49 -0.29 2.72 16 17 O -0.97 -7.21 17.13 -127.65 -2.19 -9.40 16 18 O -0.97 -7.80 16.31 -127.65 -2.08 -9.88 16 19 C -0.67 -0.78 5.66 22.27 0.13 -0.65 16 20 C -0.04 -0.04 9.47 22.27 0.21 0.17 16 21 C -0.15 0.20 10.05 22.27 0.22 0.42 16 22 C -0.07 0.21 10.05 22.27 0.22 0.43 16 23 C -0.15 0.38 10.05 22.27 0.22 0.60 16 24 C -0.04 0.02 9.47 22.27 0.21 0.23 16 25 C -0.12 0.93 7.41 31.12 0.23 1.16 16 26 C -0.21 0.70 9.04 22.37 0.20 0.91 16 27 C -0.07 0.36 10.04 22.25 0.22 0.58 16 28 C -0.15 0.57 10.04 22.28 0.22 0.79 16 29 C -0.09 0.09 8.66 22.25 0.19 0.28 16 30 H 0.38 0.88 8.70 -74.06 -0.64 0.24 16 31 H 0.10 0.87 7.82 -2.39 -0.02 0.85 16 32 H -0.27 -0.46 6.68 99.48 0.66 0.20 16 33 H -0.31 -2.93 7.11 99.48 0.71 -2.22 16 34 H 0.12 -1.22 7.65 -2.39 -0.02 -1.24 16 35 H 0.13 -1.38 7.67 -2.39 -0.02 -1.40 16 36 H 0.42 -6.47 8.70 -92.71 -0.81 -7.28 16 37 H 0.11 -0.39 7.44 -2.39 -0.02 -0.41 16 38 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.14 -0.08 7.56 -2.91 -0.02 -0.10 16 40 H 0.15 -0.81 8.06 -2.91 -0.02 -0.83 16 41 H 0.15 -1.24 8.06 -2.91 -0.02 -1.26 16 42 H 0.15 -1.16 8.06 -2.91 -0.02 -1.18 16 43 H 0.15 -0.50 7.57 -2.91 -0.02 -0.52 16 44 H 0.13 -1.59 8.14 -2.39 -0.02 -1.61 16 45 H 0.11 -0.85 8.10 -2.39 -0.02 -0.87 16 46 H 0.16 -1.54 6.30 -2.91 -0.02 -1.56 16 47 H 0.15 -1.54 8.06 -2.91 -0.02 -1.56 16 48 H 0.15 -1.20 8.06 -2.91 -0.02 -1.22 16 49 H 0.14 -0.56 4.86 -2.91 -0.01 -0.58 16 Total: 0.00 -39.89 423.80 -3.43 -43.32 By element: Atomic # 1 Polarization: -25.58 SS G_CDS: -0.44 Total: -26.02 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 4.13 Total: 11.21 kcal Atomic # 7 Polarization: 4.79 SS G_CDS: -2.32 Total: 2.47 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -6.59 Total: -36.59 kcal Atomic # 14 Polarization: 0.81 SS G_CDS: 2.08 Total: 2.88 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -0.29 Total: 2.72 kcal Total: -39.89 -3.43 -43.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.506 kcal (2) G-P(sol) polarization free energy of solvation -39.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds