Wall clock time and date at job start Sat Mar 6 2021 18:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86296 * 109.47409 * 2 1 4 4 C 1.50702 * 109.47363 * 120.00094 * 2 1 3 5 5 C 1.35447 * 125.56255 * 244.96034 * 4 2 1 6 6 C 1.39838 * 107.86376 * 179.77262 * 5 4 2 7 7 C 1.37875 * 107.08393 * 0.41669 * 6 5 4 8 8 C 1.46680 * 126.23070 * 179.84477 * 7 6 5 9 9 O 1.21690 * 120.00475 * 359.69480 * 8 7 6 10 10 N 1.34780 * 119.99739 * 179.68753 * 8 7 6 11 11 C 1.46493 * 119.99849 * 180.02562 * 10 8 7 12 12 H 1.09007 * 112.85347 * 336.19748 * 11 10 8 13 13 C 1.53958 * 113.53601 * 107.51146 * 11 10 8 14 14 C 1.53777 * 87.02253 * 89.18822 * 13 11 10 15 15 H 1.08997 * 113.61245 * 270.77660 * 14 13 11 16 16 S 1.81395 * 113.61696 * 139.95028 * 14 13 11 17 17 O 1.42105 * 110.54530 * 192.48804 * 16 14 13 18 18 O 1.42101 * 110.54333 * 329.23976 * 16 14 13 19 19 C 1.76198 * 104.44778 * 80.86439 * 16 14 13 20 20 C 1.38241 * 119.99959 * 269.72671 * 19 16 14 21 21 C 1.38230 * 120.00018 * 179.80927 * 20 19 16 22 22 C 1.38242 * 119.99878 * 0.39918 * 21 20 19 23 23 C 1.38225 * 120.00037 * 359.85625 * 22 21 20 24 24 C 1.38235 * 120.00275 * 90.00186 * 19 16 14 25 25 C 1.53783 * 113.61358 * 205.00447 * 11 10 8 26 26 N 1.35536 * 125.56336 * 64.99794 * 4 2 1 27 27 H 0.96700 * 113.99985 * 299.99624 * 1 2 3 28 28 H 1.09005 * 109.47270 * 240.00132 * 2 1 3 29 29 H 1.48507 * 109.99908 * 300.00113 * 3 2 1 30 30 H 1.48496 * 110.00155 * 61.31541 * 3 2 1 31 31 H 1.07997 * 126.07100 * 0.02562 * 5 4 2 32 32 H 1.08005 * 126.46037 * 180.29800 * 6 5 4 33 33 H 0.97002 * 120.00211 * 0.02562 * 10 8 7 34 34 H 1.08998 * 113.66458 * 334.65853 * 13 11 10 35 35 H 1.09005 * 113.60807 * 203.70732 * 13 11 10 36 36 H 1.08001 * 119.99521 * 359.97438 * 20 19 16 37 37 H 1.08003 * 120.00384 * 180.22765 * 21 20 19 38 38 H 1.08000 * 119.99647 * 179.83478 * 22 21 20 39 39 H 1.08010 * 120.00091 * 179.97438 * 23 22 21 40 40 H 1.08001 * 119.99937 * 359.97438 * 24 19 16 41 41 H 1.09004 * 113.61892 * 156.33925 * 25 11 10 42 42 H 1.08995 * 113.61642 * 25.43164 * 25 11 10 43 43 H 0.97003 * 125.67537 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6336 -0.1395 2.2381 6 6 2.9036 -1.1299 3.1877 7 6 2.3540 -2.3034 2.7165 8 6 2.3951 -3.6091 3.3835 9 8 2.9594 -3.7275 4.4552 10 7 1.8078 -4.6778 2.8095 11 6 1.8484 -5.9817 3.4759 12 1 2.6835 -6.0767 4.1700 13 6 0.4951 -6.4098 4.0721 14 6 0.1908 -7.0568 2.7107 15 1 -0.2927 -6.3816 2.0047 16 16 -0.6479 -8.6601 2.8392 17 8 -0.6413 -9.3284 1.5851 18 8 -0.2593 -9.3321 4.0295 19 6 -2.3410 -8.2506 3.1044 20 6 -2.8216 -8.0973 4.3915 21 6 -4.1489 -7.7722 4.5995 22 6 -4.9976 -7.6084 3.5206 23 6 -4.5183 -7.7668 2.2339 24 6 -3.1900 -8.0881 2.0257 25 6 1.7113 -7.1712 2.5109 26 7 1.7548 -2.0251 1.5090 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.5615 2.4679 -1.2085 30 1 1.5879 2.4585 1.2241 31 1 2.9288 0.8975 2.2996 32 1 3.4428 -1.0006 4.1145 33 1 1.3583 -4.5835 1.9551 34 1 -0.1605 -5.5734 4.3143 35 1 0.5847 -7.1285 4.8868 36 1 -2.1594 -8.2290 5.2344 37 1 -4.5236 -7.6488 5.6049 38 1 -6.0353 -7.3569 3.6832 39 1 -5.1815 -7.6392 1.3910 40 1 -2.8155 -8.2118 1.0203 41 1 2.1339 -8.0985 2.8979 42 1 2.0361 -6.9487 1.4945 43 1 1.2845 -2.6635 0.9503 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_6580494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:01:32 Heat of formation + Delta-G solvation = -29.177969 kcal Electronic energy + Delta-G solvation = -29628.261126 eV Core-core repulsion = 25348.260833 eV Total energy + Delta-G solvation = -4280.000293 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.56464 -41.08980 -40.09056 -39.26200 -38.25985 -37.81869 -37.11549 -34.65267 -32.36181 -32.14478 -32.05183 -31.37565 -27.69695 -27.07591 -26.28451 -24.24386 -23.76877 -23.49943 -21.70488 -21.32404 -20.96330 -19.99962 -19.94362 -19.07623 -18.36612 -17.91638 -17.16825 -17.02416 -16.99233 -16.69975 -16.39319 -16.07939 -15.86089 -15.60852 -15.48804 -15.19958 -15.05626 -14.57169 -14.54538 -14.45023 -14.25734 -14.06249 -13.97075 -13.82416 -13.79609 -13.60887 -13.28791 -13.27890 -13.16142 -12.34045 -12.27178 -12.21501 -12.07394 -11.90020 -11.81451 -11.44223 -11.26280 -10.83691 -10.42983 -10.36040 -10.09756 -10.07876 -9.30626 -4.82454 -1.04395 -0.22819 0.24383 0.26967 1.22748 1.53324 1.69563 1.72574 1.83742 1.94438 2.20781 2.22917 2.38321 2.67398 2.85198 3.02159 3.32247 3.35576 3.46930 3.59380 3.73223 3.77149 3.83194 3.89965 4.05149 4.25107 4.30488 4.33224 4.36018 4.39988 4.44733 4.48232 4.51932 4.65407 4.66005 4.76885 4.81652 4.90134 4.96245 5.03002 5.10828 5.22132 5.29931 5.34366 5.57221 5.78187 5.80982 6.24263 6.40107 6.42560 6.98271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.062 4.062 3 Si 0.792 3.208 4 C 0.034 3.966 5 C -0.206 4.206 6 C -0.116 4.116 7 C -0.063 4.063 8 C 0.594 3.406 9 O -0.564 6.564 10 N -0.700 5.700 11 C 0.130 3.870 12 H 0.107 0.893 13 C -0.126 4.126 14 C -0.577 4.577 15 H 0.184 0.816 16 S 2.503 3.497 17 O -0.971 6.971 18 O -0.964 6.964 19 C -0.667 4.667 20 C -0.040 4.040 21 C -0.149 4.149 22 C -0.071 4.071 23 C -0.148 4.148 24 C -0.043 4.043 25 C -0.118 4.118 26 N -0.512 5.512 27 H 0.389 0.611 28 H 0.136 0.864 29 H -0.300 1.300 30 H -0.282 1.282 31 H 0.165 0.835 32 H 0.146 0.854 33 H 0.411 0.589 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 5.049 -3.704 6.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.171 4.171 3 Si 0.695 3.305 4 C -0.085 4.085 5 C -0.230 4.230 6 C -0.143 4.143 7 C -0.177 4.177 8 C 0.383 3.617 9 O -0.442 6.442 10 N -0.351 5.351 11 C 0.023 3.977 12 H 0.125 0.875 13 C -0.166 4.166 14 C -0.689 4.689 15 H 0.202 0.798 16 S 2.688 3.312 17 O -0.968 6.968 18 O -0.962 6.962 19 C -0.754 4.754 20 C -0.059 4.059 21 C -0.167 4.167 22 C -0.089 4.089 23 C -0.166 4.166 24 C -0.062 4.062 25 C -0.157 4.157 26 N -0.109 5.109 27 H 0.239 0.761 28 H 0.153 0.847 29 H -0.228 1.228 30 H -0.208 1.208 31 H 0.182 0.818 32 H 0.164 0.836 33 H 0.248 0.752 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.166 0.834 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -1.252 4.425 -3.622 5.854 hybrid contribution -2.165 0.007 0.102 2.167 sum -3.417 4.432 -3.519 6.611 Atomic orbital electron populations 1.86580 1.18100 1.80495 1.50453 1.25030 0.83591 1.12044 0.96396 0.93288 0.90275 0.70332 0.76569 1.21233 1.03694 0.84215 0.99367 1.20945 1.06150 1.00889 0.95000 1.21498 1.01291 0.90960 1.00528 1.20243 1.10975 0.95238 0.91212 1.17185 0.77672 0.82813 0.84038 1.90866 1.45717 1.84898 1.22726 1.45369 1.57042 1.07812 1.24891 1.21724 0.98784 0.81765 0.95392 0.87457 1.23342 0.98128 1.01914 0.93167 1.31661 1.08633 1.19698 1.08921 0.79810 1.05090 0.74706 0.77993 0.73375 1.93535 1.86512 1.72410 1.44367 1.93542 1.82518 1.71707 1.48386 1.30458 1.24578 1.19782 1.00593 1.21214 0.97259 0.92093 0.95340 1.21684 0.93584 1.00513 1.00945 1.21918 1.01134 0.93226 0.92593 1.21682 0.95818 1.00497 0.98633 1.21230 0.94246 0.92287 0.98388 1.23222 0.88901 0.99988 1.03603 1.41886 1.42528 1.09575 1.16934 0.76071 0.84667 1.22794 1.20841 0.81774 0.83634 0.75175 0.88300 0.86482 0.83534 0.83098 0.82846 0.82939 0.83355 0.86601 0.86220 0.73180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.07 12.88 -148.98 -1.92 0.16 16 2 C -0.06 0.41 3.08 71.24 0.22 0.63 16 3 Si 0.79 -4.93 30.56 68.60 2.10 -2.84 16 4 C 0.03 -0.15 6.46 41.34 0.27 0.11 16 5 C -0.21 0.48 9.32 22.01 0.21 0.69 16 6 C -0.12 -0.21 10.65 22.57 0.24 0.03 16 7 C -0.06 -0.02 7.06 40.35 0.28 0.26 16 8 C 0.59 1.51 7.79 86.45 0.67 2.18 16 9 O -0.56 -6.35 16.48 -4.32 -0.07 -6.42 16 10 N -0.70 3.53 5.26 -443.71 -2.33 1.20 16 11 C 0.13 -0.56 4.33 45.58 0.20 -0.37 16 12 H 0.11 -0.08 7.46 -2.38 -0.02 -0.10 16 13 C -0.13 0.69 7.45 31.18 0.23 0.93 16 14 C -0.58 4.25 4.19 31.12 0.13 4.38 16 15 H 0.18 -2.52 8.14 -2.39 -0.02 -2.54 16 16 S 2.50 2.86 5.12 -56.49 -0.29 2.57 16 17 O -0.97 -7.47 17.13 -127.65 -2.19 -9.66 16 18 O -0.96 -7.09 16.34 -127.65 -2.09 -9.18 16 19 C -0.67 -0.86 5.66 22.27 0.13 -0.73 16 20 C -0.04 -0.03 9.47 22.27 0.21 0.18 16 21 C -0.15 0.21 10.05 22.27 0.22 0.44 16 22 C -0.07 0.19 10.05 22.27 0.22 0.41 16 23 C -0.15 0.29 10.05 22.27 0.22 0.51 16 24 C -0.04 -0.01 9.47 22.27 0.21 0.20 16 25 C -0.12 0.90 7.42 31.12 0.23 1.13 16 26 N -0.51 2.75 5.99 -171.93 -1.03 1.72 16 27 H 0.39 -3.21 8.70 -74.06 -0.64 -3.86 16 28 H 0.14 -1.27 7.96 -2.38 -0.02 -1.29 16 29 H -0.30 -0.43 7.11 99.48 0.71 0.28 16 30 H -0.28 0.45 7.11 99.48 0.71 1.16 16 31 H 0.16 -0.96 6.19 -2.91 -0.02 -0.98 16 32 H 0.15 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.41 -4.76 7.83 -92.71 -0.73 -5.48 16 34 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.12 -0.57 7.46 -2.38 -0.02 -0.59 16 36 H 0.15 -0.19 7.56 -2.91 -0.02 -0.21 16 37 H 0.15 -0.87 8.06 -2.91 -0.02 -0.89 16 38 H 0.15 -1.19 8.06 -2.91 -0.02 -1.21 16 39 H 0.15 -1.01 8.06 -2.91 -0.02 -1.03 16 40 H 0.15 -0.36 7.57 -2.91 -0.02 -0.38 16 41 H 0.12 -0.91 8.10 -2.39 -0.02 -0.93 16 42 H 0.12 -1.36 8.14 -2.39 -0.02 -1.38 16 43 H 0.43 -4.67 8.19 -92.71 -0.76 -5.43 16 Total: 0.00 -31.70 380.14 -4.92 -36.62 By element: Atomic # 1 Polarization: -24.16 SS G_CDS: -1.00 Total: -25.16 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 3.90 Total: 10.99 kcal Atomic # 7 Polarization: 6.28 SS G_CDS: -3.36 Total: 2.92 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -6.26 Total: -25.10 kcal Atomic # 14 Polarization: -4.93 SS G_CDS: 2.10 Total: -2.84 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -0.29 Total: 2.57 kcal Total: -31.70 -4.92 -36.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_6580494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.446 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds