Wall clock time and date at job start Sat Mar 6 2021 18:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86309 * 109.46590 * 2 1 4 4 C 1.50698 * 109.47148 * 119.99876 * 2 1 3 5 5 C 1.32771 * 124.71246 * 65.31024 * 4 2 1 6 6 C 1.44427 * 113.08225 * 180.16746 * 5 4 2 7 7 C 1.47185 * 123.45964 * 179.83360 * 6 5 4 8 8 O 1.21643 * 119.99998 * 359.73025 * 7 6 5 9 9 N 1.34773 * 120.00084 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72617 * 9 7 6 11 11 H 1.09006 * 112.84642 * 336.19847 * 10 9 7 12 12 C 1.53774 * 113.61696 * 107.50253 * 10 9 7 13 13 C 1.53777 * 87.08072 * 89.12070 * 12 10 9 14 14 H 1.08997 * 113.69135 * 270.87338 * 13 12 10 15 15 S 1.81403 * 113.61758 * 139.98427 * 13 12 10 16 16 O 1.42098 * 110.54306 * 194.12786 * 15 13 12 17 17 O 1.42103 * 110.53751 * 330.87539 * 15 13 12 18 18 C 1.76198 * 104.44982 * 82.49846 * 15 13 12 19 19 C 1.38237 * 120.00220 * 269.72775 * 18 15 13 20 20 C 1.38236 * 119.99712 * 179.74264 * 19 18 15 21 21 C 1.38230 * 120.00002 * 0.53656 * 20 19 18 22 22 C 1.38233 * 120.00266 * 359.73643 * 21 20 19 23 23 C 1.38236 * 120.00069 * 359.97438 * 22 21 20 24 24 C 1.53780 * 113.61736 * 205.00698 * 10 9 7 25 25 C 1.36011 * 113.07825 * 359.56614 * 6 5 4 26 26 S 1.70450 * 110.81548 * 0.23337 * 25 6 5 27 27 H 0.96696 * 114.00502 * 299.99614 * 1 2 3 28 28 H 1.08994 * 109.47323 * 240.00302 * 2 1 3 29 29 H 1.48500 * 109.99475 * 178.68219 * 3 2 1 30 30 H 1.48493 * 110.00014 * 300.00077 * 3 2 1 31 31 H 1.07994 * 123.45583 * 359.97438 * 5 4 2 32 32 H 0.97000 * 120.00112 * 359.73054 * 9 7 6 33 33 H 1.09001 * 113.61556 * 203.66763 * 12 10 9 34 34 H 1.09000 * 113.61618 * 334.56933 * 12 10 9 35 35 H 1.07992 * 119.99746 * 0.02562 * 19 18 15 36 36 H 1.08000 * 119.99647 * 180.29550 * 20 19 18 37 37 H 1.08008 * 119.99957 * 179.77047 * 21 20 19 38 38 H 1.08007 * 120.00243 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.00065 * 179.97438 * 23 22 21 40 40 H 1.09002 * 113.61835 * 25.42623 * 24 10 9 41 41 H 1.09003 * 113.61714 * 156.33419 * 24 10 9 42 42 H 1.07993 * 124.59091 * 180.20636 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7536 -2.0015 1.4836 6 6 2.3364 -2.4182 2.7376 7 6 2.2710 -3.7986 3.2440 8 8 1.6991 -4.6567 2.5988 9 7 2.8395 -4.1107 4.4255 10 6 2.7691 -5.4834 4.9324 11 1 1.9286 -6.0434 4.5224 12 6 4.1079 -6.2364 4.8594 13 6 4.4085 -5.6779 6.2602 14 1 4.9093 -4.7099 6.2476 15 16 5.2141 -6.8732 7.3617 16 8 5.1693 -6.4198 8.7076 17 8 4.8329 -8.1994 7.0223 18 6 6.9204 -6.7877 6.9307 19 6 7.4281 -7.6193 5.9500 20 6 8.7657 -7.5484 5.6083 21 6 9.5978 -6.6538 6.2548 22 6 9.0913 -5.8262 7.2393 23 6 7.7525 -5.8928 7.5770 24 6 2.8871 -5.5818 6.4625 25 6 2.9571 -1.4051 3.3998 26 16 2.8387 0.0527 2.5245 27 1 -0.3934 0.4416 0.7650 28 1 1.7924 -0.5138 -0.8900 29 1 3.5345 1.7704 0.0321 30 1 1.5613 2.4679 -1.2084 31 1 1.2245 -2.6708 0.8214 32 1 3.2952 -3.4264 4.9402 33 1 3.9983 -7.3207 4.8359 34 1 4.7784 -5.8610 4.0864 35 1 6.7788 -8.3211 5.4478 36 1 9.1613 -8.1948 4.8388 37 1 10.6437 -6.6011 5.9903 38 1 9.7416 -5.1275 7.7448 39 1 7.3568 -5.2465 8.3465 40 1 2.5722 -4.6779 6.9839 41 1 2.4438 -6.4871 6.8774 42 1 3.4567 -1.5101 4.3514 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12550010_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:01:53 Heat of formation + Delta-G solvation = -35.675795 kcal Electronic energy + Delta-G solvation = -29088.978684 eV Core-core repulsion = 24835.048641 eV Total energy + Delta-G solvation = -4253.930043 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.063 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.53333 -40.17197 -39.82614 -38.68294 -38.13405 -37.13926 -36.98210 -34.56875 -32.43155 -32.12899 -31.79300 -27.51238 -27.23501 -27.03369 -25.42676 -24.25060 -23.83938 -22.37463 -21.22222 -20.71740 -19.96927 -19.18933 -18.98967 -18.42101 -17.85325 -17.70383 -17.12552 -17.06460 -16.88943 -16.39112 -16.08512 -16.00470 -15.70432 -15.63786 -15.46305 -15.03476 -14.64045 -14.62904 -14.28451 -14.18853 -14.14071 -14.10346 -13.90163 -13.71590 -13.56719 -13.32820 -13.11508 -13.02023 -12.75086 -12.37103 -12.35400 -12.29941 -12.18446 -12.00009 -11.84124 -11.32012 -11.03557 -10.67124 -10.48202 -10.33122 -10.15358 -10.11751 -9.60572 -5.27951 -1.05150 -0.47485 -0.26577 0.18593 0.23800 0.59021 0.80727 1.10545 1.48719 1.71577 1.80048 1.88129 2.21649 2.32325 2.58778 2.77447 2.94162 3.24563 3.29611 3.35983 3.48572 3.53588 3.70964 3.74696 3.79538 3.82865 3.89597 4.16197 4.20109 4.21243 4.22838 4.30414 4.32782 4.38545 4.48085 4.56955 4.59913 4.60813 4.71082 4.80829 4.95827 4.95866 5.11539 5.12569 5.26105 5.28980 5.71551 6.27555 6.40540 7.06226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.026 4.026 3 Si 0.656 3.344 4 C -0.243 4.243 5 C -0.053 4.053 6 C -0.156 4.156 7 C 0.582 3.418 8 O -0.525 6.525 9 N -0.711 5.711 10 C 0.136 3.864 11 H 0.120 0.880 12 C -0.125 4.125 13 C -0.604 4.604 14 H 0.154 0.846 15 S 2.500 3.500 16 O -0.934 6.934 17 O -0.929 6.929 18 C -0.659 4.659 19 C -0.023 4.023 20 C -0.140 4.140 21 C -0.065 4.065 22 C -0.140 4.140 23 C -0.026 4.026 24 C -0.117 4.117 25 C -0.206 4.206 26 S 0.200 5.800 27 H 0.381 0.619 28 H 0.125 0.875 29 H -0.237 1.237 30 H -0.232 1.232 31 H 0.157 0.843 32 H 0.400 0.600 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 6.538 0.863 7.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.139 4.139 3 Si 0.555 3.445 4 C -0.360 4.360 5 C -0.082 4.082 6 C -0.175 4.175 7 C 0.368 3.632 8 O -0.401 6.401 9 N -0.362 5.362 10 C 0.029 3.971 11 H 0.138 0.862 12 C -0.164 4.164 13 C -0.713 4.713 14 H 0.172 0.828 15 S 2.681 3.319 16 O -0.931 6.931 17 O -0.926 6.926 18 C -0.746 4.746 19 C -0.041 4.041 20 C -0.159 4.159 21 C -0.083 4.083 22 C -0.159 4.159 23 C -0.045 4.045 24 C -0.156 4.156 25 C -0.345 4.345 26 S 0.466 5.534 27 H 0.229 0.771 28 H 0.142 0.858 29 H -0.162 1.162 30 H -0.155 1.155 31 H 0.174 0.826 32 H 0.235 0.765 33 H 0.136 0.864 34 H 0.111 0.889 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.245 7.163 0.298 7.870 hybrid contribution 0.720 -1.255 -0.394 1.499 sum 3.965 5.908 -0.096 7.116 Atomic orbital electron populations 1.86550 1.16497 1.81664 1.49129 1.24451 0.85318 1.09067 0.95086 0.95144 0.82022 0.77299 0.90044 1.24811 1.09606 0.98523 1.03034 1.21053 0.97688 0.94464 0.94959 1.20197 1.05927 0.93845 0.97509 1.17610 0.77932 0.87133 0.80478 1.90845 1.42594 1.49577 1.57109 1.45465 1.58111 1.10746 1.21915 1.21667 0.98916 0.83216 0.93285 0.86226 1.23261 0.98689 1.02240 0.92217 1.31786 1.08694 1.17595 1.13260 0.82823 1.05405 0.74681 0.76179 0.75682 1.93585 1.85886 1.82860 1.30752 1.93593 1.82065 1.32131 1.84833 1.30521 1.24885 1.08753 1.10411 1.20998 0.96340 0.94307 0.92491 1.21375 0.93822 0.99698 1.00969 1.21577 1.00153 0.93033 0.93516 1.21361 0.95605 1.00401 0.98542 1.20992 0.93834 0.94281 0.95429 1.23084 0.89402 1.05551 0.97600 1.25794 1.04894 0.98670 1.05106 1.83077 1.50447 1.09112 1.10757 0.77137 0.85817 1.16155 1.15511 0.82553 0.76454 0.86432 0.88897 0.84029 0.84802 0.85024 0.84833 0.84123 0.88235 0.87094 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.26 12.88 -35.23 -0.45 -0.20 16 2 C -0.03 0.03 2.94 36.00 0.11 0.14 16 3 Si 0.66 -1.40 30.92 -169.99 -5.26 -6.65 16 4 C -0.24 0.22 5.65 -36.18 -0.20 0.01 16 5 C -0.05 -0.04 9.95 -39.02 -0.39 -0.43 16 6 C -0.16 -0.01 5.98 -104.63 -0.63 -0.63 16 7 C 0.58 0.81 7.79 -12.63 -0.10 0.71 16 8 O -0.52 -2.83 16.40 5.24 0.09 -2.74 16 9 N -0.71 1.36 5.23 -54.17 -0.28 1.08 16 10 C 0.14 -0.25 4.32 -67.12 -0.29 -0.54 16 11 H 0.12 -0.06 7.46 -51.93 -0.39 -0.45 16 12 C -0.12 0.31 7.44 -25.92 -0.19 0.12 16 13 C -0.60 1.96 4.19 -25.92 -0.11 1.85 16 14 H 0.15 -0.89 8.14 -51.93 -0.42 -1.31 16 15 S 2.50 0.60 5.13 -107.50 -0.55 0.05 16 16 O -0.93 -3.12 17.13 -57.54 -0.99 -4.10 16 17 O -0.93 -2.80 16.30 -57.54 -0.94 -3.74 16 18 C -0.66 -0.23 5.66 -39.58 -0.22 -0.46 16 19 C -0.02 0.00 9.47 -39.58 -0.37 -0.38 16 20 C -0.14 0.09 10.05 -39.58 -0.40 -0.31 16 21 C -0.06 0.07 10.05 -39.59 -0.40 -0.33 16 22 C -0.14 0.12 10.05 -39.58 -0.40 -0.28 16 23 C -0.03 0.00 9.47 -39.58 -0.37 -0.37 16 24 C -0.12 0.38 7.42 -25.92 -0.19 0.19 16 25 C -0.21 0.54 10.38 29.93 0.31 0.85 16 26 S 0.20 -0.55 20.20 -107.50 -2.17 -2.72 16 27 H 0.38 -1.68 8.70 45.56 0.40 -1.29 16 28 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H -0.24 0.06 7.11 56.52 0.40 0.46 16 30 H -0.23 -0.19 7.11 56.52 0.40 0.22 16 31 H 0.16 0.29 8.06 -52.49 -0.42 -0.13 16 32 H 0.40 -1.91 7.20 -40.82 -0.29 -2.21 16 33 H 0.12 -0.30 7.43 -51.93 -0.39 -0.69 16 34 H 0.09 -0.25 8.14 -51.93 -0.42 -0.68 16 35 H 0.14 -0.17 7.56 -52.49 -0.40 -0.56 16 36 H 0.13 -0.35 8.06 -52.49 -0.42 -0.78 16 37 H 0.13 -0.43 8.06 -52.48 -0.42 -0.85 16 38 H 0.13 -0.39 8.06 -52.48 -0.42 -0.81 16 39 H 0.14 -0.21 7.57 -52.49 -0.40 -0.60 16 40 H 0.10 -0.46 8.14 -51.93 -0.42 -0.88 16 41 H 0.11 -0.42 8.10 -51.93 -0.42 -0.84 16 42 H 0.17 -0.96 7.01 -52.49 -0.37 -1.33 16 LS Contribution 384.86 15.07 5.80 5.80 Total: 0.00 -12.91 384.86 -13.43 -26.34 By element: Atomic # 1 Polarization: -8.43 SS G_CDS: -4.82 Total: -13.26 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -3.85 Total: 0.13 kcal Atomic # 7 Polarization: 1.36 SS G_CDS: -0.28 Total: 1.08 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -2.29 Total: -10.78 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.26 Total: -6.65 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.72 Total: -2.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -12.91 -13.43 -26.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.336 kcal (2) G-P(sol) polarization free energy of solvation -12.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds