Wall clock time and date at job start Sat Mar 6 2021 18:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86309 * 109.46590 * 2 1 4 4 C 1.50698 * 109.47148 * 119.99876 * 2 1 3 5 5 C 1.32771 * 124.71246 * 65.31024 * 4 2 1 6 6 C 1.44427 * 113.08225 * 180.16746 * 5 4 2 7 7 C 1.47185 * 123.45964 * 179.83360 * 6 5 4 8 8 O 1.21643 * 119.99998 * 359.73025 * 7 6 5 9 9 N 1.34773 * 120.00084 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72617 * 9 7 6 11 11 H 1.09006 * 112.84642 * 336.19847 * 10 9 7 12 12 C 1.53774 * 113.61696 * 107.50253 * 10 9 7 13 13 C 1.53777 * 87.08072 * 89.12070 * 12 10 9 14 14 H 1.08997 * 113.69135 * 270.87338 * 13 12 10 15 15 S 1.81403 * 113.61758 * 139.98427 * 13 12 10 16 16 O 1.42098 * 110.54306 * 194.12786 * 15 13 12 17 17 O 1.42103 * 110.53751 * 330.87539 * 15 13 12 18 18 C 1.76198 * 104.44982 * 82.49846 * 15 13 12 19 19 C 1.38237 * 120.00220 * 269.72775 * 18 15 13 20 20 C 1.38236 * 119.99712 * 179.74264 * 19 18 15 21 21 C 1.38230 * 120.00002 * 0.53656 * 20 19 18 22 22 C 1.38233 * 120.00266 * 359.73643 * 21 20 19 23 23 C 1.38236 * 120.00069 * 359.97438 * 22 21 20 24 24 C 1.53780 * 113.61736 * 205.00698 * 10 9 7 25 25 C 1.36011 * 113.07825 * 359.56614 * 6 5 4 26 26 S 1.70450 * 110.81548 * 0.23337 * 25 6 5 27 27 H 0.96696 * 114.00502 * 299.99614 * 1 2 3 28 28 H 1.08994 * 109.47323 * 240.00302 * 2 1 3 29 29 H 1.48500 * 109.99475 * 178.68219 * 3 2 1 30 30 H 1.48493 * 110.00014 * 300.00077 * 3 2 1 31 31 H 1.07994 * 123.45583 * 359.97438 * 5 4 2 32 32 H 0.97000 * 120.00112 * 359.73054 * 9 7 6 33 33 H 1.09001 * 113.61556 * 203.66763 * 12 10 9 34 34 H 1.09000 * 113.61618 * 334.56933 * 12 10 9 35 35 H 1.07992 * 119.99746 * 0.02562 * 19 18 15 36 36 H 1.08000 * 119.99647 * 180.29550 * 20 19 18 37 37 H 1.08008 * 119.99957 * 179.77047 * 21 20 19 38 38 H 1.08007 * 120.00243 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.00065 * 179.97438 * 23 22 21 40 40 H 1.09002 * 113.61835 * 25.42623 * 24 10 9 41 41 H 1.09003 * 113.61714 * 156.33419 * 24 10 9 42 42 H 1.07993 * 124.59091 * 180.20636 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.7536 -2.0015 1.4836 6 6 2.3364 -2.4182 2.7376 7 6 2.2710 -3.7986 3.2440 8 8 1.6991 -4.6567 2.5988 9 7 2.8395 -4.1107 4.4255 10 6 2.7691 -5.4834 4.9324 11 1 1.9286 -6.0434 4.5224 12 6 4.1079 -6.2364 4.8594 13 6 4.4085 -5.6779 6.2602 14 1 4.9093 -4.7099 6.2476 15 16 5.2141 -6.8732 7.3617 16 8 5.1693 -6.4198 8.7076 17 8 4.8329 -8.1994 7.0223 18 6 6.9204 -6.7877 6.9307 19 6 7.4281 -7.6193 5.9500 20 6 8.7657 -7.5484 5.6083 21 6 9.5978 -6.6538 6.2548 22 6 9.0913 -5.8262 7.2393 23 6 7.7525 -5.8928 7.5770 24 6 2.8871 -5.5818 6.4625 25 6 2.9571 -1.4051 3.3998 26 16 2.8387 0.0527 2.5245 27 1 -0.3934 0.4416 0.7650 28 1 1.7924 -0.5138 -0.8900 29 1 3.5345 1.7704 0.0321 30 1 1.5613 2.4679 -1.2084 31 1 1.2245 -2.6708 0.8214 32 1 3.2952 -3.4264 4.9402 33 1 3.9983 -7.3207 4.8359 34 1 4.7784 -5.8610 4.0864 35 1 6.7788 -8.3211 5.4478 36 1 9.1613 -8.1948 4.8388 37 1 10.6437 -6.6011 5.9903 38 1 9.7416 -5.1275 7.7448 39 1 7.3568 -5.2465 8.3465 40 1 2.5722 -4.6779 6.9839 41 1 2.4438 -6.4871 6.8774 42 1 3.4567 -1.5101 4.3514 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:01:52 Heat of formation + Delta-G solvation = -40.308624 kcal Electronic energy + Delta-G solvation = -29089.179578 eV Core-core repulsion = 24835.048641 eV Total energy + Delta-G solvation = -4254.130937 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.063 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.48779 -40.06502 -39.74126 -38.65328 -38.23378 -37.09865 -37.08872 -34.55366 -32.33417 -32.02542 -31.68994 -27.41831 -27.03603 -26.93061 -25.34642 -24.16262 -23.73841 -22.31186 -21.15544 -20.63544 -19.93248 -19.12287 -18.86410 -18.38023 -17.79191 -17.61946 -17.03040 -16.97654 -16.85648 -16.34669 -16.02596 -15.98830 -15.68249 -15.54440 -15.36723 -14.92146 -14.57282 -14.51947 -14.22274 -14.11701 -14.05110 -13.96115 -13.77716 -13.63494 -13.51705 -13.26250 -13.24809 -13.13667 -12.64060 -12.31834 -12.24544 -12.15677 -12.02680 -11.92492 -11.78298 -11.26059 -11.09103 -10.58353 -10.39362 -10.29528 -10.07065 -10.00118 -9.44115 -5.14053 -1.01632 -0.34131 -0.20203 0.27059 0.39519 0.69919 0.81037 1.22425 1.60273 1.75752 1.90549 1.97766 2.21626 2.41020 2.69472 2.88318 3.05985 3.35641 3.39699 3.52152 3.66169 3.78620 3.84425 3.89479 3.92743 3.97444 4.07716 4.27173 4.35912 4.39093 4.41033 4.43973 4.47259 4.53610 4.68550 4.69402 4.70999 4.80515 4.85927 4.92876 5.01562 5.05768 5.16323 5.24752 5.36993 5.38850 5.83644 6.41214 6.69321 7.10388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.038 4.038 3 Si 0.742 3.258 4 C -0.250 4.250 5 C -0.076 4.076 6 C -0.183 4.183 7 C 0.580 3.420 8 O -0.579 6.579 9 N -0.693 5.693 10 C 0.129 3.871 11 H 0.101 0.899 12 C -0.127 4.127 13 C -0.574 4.574 14 H 0.189 0.811 15 S 2.501 3.499 16 O -0.970 6.970 17 O -0.967 6.967 18 C -0.666 4.666 19 C -0.041 4.041 20 C -0.149 4.149 21 C -0.071 4.071 22 C -0.146 4.146 23 C -0.041 4.041 24 C -0.117 4.117 25 C -0.188 4.188 26 S 0.253 5.747 27 H 0.397 0.603 28 H 0.113 0.887 29 H -0.256 1.256 30 H -0.276 1.276 31 H 0.130 0.870 32 H 0.417 0.583 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.435 8.813 2.050 10.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.150 4.150 3 Si 0.644 3.356 4 C -0.367 4.367 5 C -0.106 4.106 6 C -0.201 4.201 7 C 0.368 3.632 8 O -0.460 6.460 9 N -0.345 5.345 10 C 0.022 3.978 11 H 0.119 0.881 12 C -0.167 4.167 13 C -0.686 4.686 14 H 0.207 0.793 15 S 2.686 3.314 16 O -0.967 6.967 17 O -0.964 6.964 18 C -0.754 4.754 19 C -0.060 4.060 20 C -0.168 4.168 21 C -0.089 4.089 22 C -0.165 4.165 23 C -0.060 4.060 24 C -0.157 4.157 25 C -0.327 4.327 26 S 0.520 5.480 27 H 0.247 0.753 28 H 0.130 0.870 29 H -0.181 1.181 30 H -0.201 1.201 31 H 0.148 0.852 32 H 0.256 0.744 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.778 9.414 1.568 10.672 hybrid contribution 0.263 -1.903 -0.831 2.093 sum 5.041 7.510 0.737 9.075 Atomic orbital electron populations 1.86508 1.16998 1.82218 1.50383 1.24687 0.85189 1.10256 0.94850 0.94205 0.79355 0.74185 0.87850 1.24887 1.09737 0.98246 1.03833 1.20990 0.98874 0.95004 0.95690 1.20032 1.08221 0.93890 0.97992 1.17883 0.77314 0.87261 0.80791 1.90815 1.45235 1.51102 1.58818 1.45296 1.57104 1.11125 1.20936 1.21659 0.98637 0.83227 0.94296 0.88079 1.23305 0.98400 1.02230 0.92746 1.31658 1.08454 1.17494 1.11037 0.79344 1.05140 0.74699 0.76057 0.75469 1.93534 1.86444 1.83270 1.33466 1.93540 1.82656 1.34965 1.85279 1.30447 1.24752 1.09345 1.10837 1.21197 0.97087 0.94735 0.92986 1.21669 0.93616 1.00088 1.01418 1.21916 1.01244 0.92531 0.93165 1.21689 0.95591 1.00688 0.98541 1.21244 0.94386 0.94594 0.95791 1.23215 0.89005 1.06924 0.96512 1.26211 1.02809 0.97845 1.05814 1.82910 1.48499 1.07845 1.08750 0.75283 0.86991 1.18107 1.20122 0.85173 0.74414 0.86790 0.88237 0.83745 0.83234 0.82850 0.82801 0.83172 0.85898 0.86886 0.77554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.00 12.88 -148.98 -1.92 -1.92 16 2 C -0.04 0.06 2.94 71.24 0.21 0.27 16 3 Si 0.74 -3.44 30.92 68.60 2.12 -1.32 16 4 C -0.25 0.40 5.65 24.51 0.14 0.53 16 5 C -0.08 -0.24 9.95 22.67 0.23 -0.01 16 6 C -0.18 -0.03 5.98 -19.87 -0.12 -0.14 16 7 C 0.58 2.03 7.79 86.59 0.67 2.71 16 8 O -0.58 -7.73 16.40 -4.17 -0.07 -7.80 16 9 N -0.69 3.26 5.23 -443.53 -2.32 0.94 16 10 C 0.13 -0.47 4.32 45.51 0.20 -0.27 16 11 H 0.10 0.08 7.46 -2.38 -0.02 0.06 16 12 C -0.13 0.63 7.44 31.12 0.23 0.86 16 13 C -0.57 4.30 4.19 31.12 0.13 4.43 16 14 H 0.19 -2.74 8.14 -2.39 -0.02 -2.76 16 15 S 2.50 2.81 5.13 -56.49 -0.29 2.52 16 16 O -0.97 -7.16 17.13 -127.65 -2.19 -9.35 16 17 O -0.97 -7.51 16.30 -127.65 -2.08 -9.59 16 18 C -0.67 -0.69 5.66 22.27 0.13 -0.56 16 19 C -0.04 -0.03 9.47 22.27 0.21 0.18 16 20 C -0.15 0.23 10.05 22.27 0.22 0.46 16 21 C -0.07 0.22 10.05 22.27 0.22 0.44 16 22 C -0.15 0.39 10.05 22.27 0.22 0.61 16 23 C -0.04 0.02 9.47 22.27 0.21 0.23 16 24 C -0.12 0.87 7.42 31.12 0.23 1.10 16 25 C -0.19 1.41 10.38 67.30 0.70 2.11 16 26 S 0.25 -1.92 20.20 -56.49 -1.14 -3.06 16 27 H 0.40 -3.41 8.70 -74.06 -0.64 -4.05 16 28 H 0.11 0.01 7.96 -2.39 -0.02 -0.01 16 29 H -0.26 0.41 7.11 99.48 0.71 1.12 16 30 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 31 H 0.13 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.42 -5.12 7.20 -92.71 -0.67 -5.79 16 33 H 0.11 -0.45 7.43 -2.39 -0.02 -0.47 16 34 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.14 -0.13 7.56 -2.91 -0.02 -0.16 16 36 H 0.15 -0.85 8.06 -2.91 -0.02 -0.88 16 37 H 0.15 -1.25 8.06 -2.91 -0.02 -1.28 16 38 H 0.15 -1.16 8.06 -2.91 -0.02 -1.18 16 39 H 0.15 -0.50 7.57 -2.91 -0.02 -0.52 16 40 H 0.12 -1.44 8.14 -2.39 -0.02 -1.46 16 41 H 0.11 -0.84 8.10 -2.39 -0.02 -0.86 16 42 H 0.21 -3.24 7.01 -2.91 -0.02 -3.26 16 Total: 0.00 -33.51 384.86 -4.23 -37.75 By element: Atomic # 1 Polarization: -20.93 SS G_CDS: -0.19 Total: -21.12 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 3.84 Total: 12.96 kcal Atomic # 7 Polarization: 3.26 SS G_CDS: -2.32 Total: 0.94 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -6.25 Total: -28.66 kcal Atomic # 14 Polarization: -3.44 SS G_CDS: 2.12 Total: -1.32 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -1.43 Total: -0.54 kcal Total: -33.51 -4.23 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.559 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds