Wall clock time and date at job start Sat Mar 6 2021 18:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37939 * 120.07868 * 2 1 4 4 C 1.38373 * 120.14566 * 180.30427 * 3 2 1 5 5 C 1.50703 * 119.85573 * 179.69952 * 4 3 2 6 6 C 1.38335 * 120.29387 * 359.67108 * 4 3 2 7 7 C 1.50708 * 119.92730 * 180.02562 * 6 4 3 8 8 O 1.42904 * 109.46982 * 285.02223 * 7 6 4 9 9 Si 1.86304 * 109.46939 * 165.02655 * 7 6 4 10 10 C 1.37977 * 120.14716 * 0.02995 * 6 4 3 11 11 C 1.39559 * 119.84891 * 359.97438 * 10 6 4 12 12 C 1.47850 * 120.14335 * 180.02562 * 11 10 6 13 13 O 1.21549 * 119.99826 * 173.75665 * 12 11 10 14 14 N 1.34780 * 119.99871 * 354.02890 * 12 11 10 15 15 C 1.46501 * 119.99709 * 179.72586 * 14 12 11 16 16 H 1.08993 * 112.84962 * 25.33666 * 15 14 12 17 17 C 1.53778 * 113.61075 * 156.53335 * 15 14 12 18 18 C 1.53787 * 87.08253 * 89.11461 * 17 15 14 19 19 H 1.08997 * 113.61296 * 270.88312 * 18 17 15 20 20 S 1.81396 * 113.61223 * 140.06310 * 18 17 15 21 21 O 1.42099 * 110.54721 * 296.62224 * 20 18 17 22 22 O 1.42101 * 110.54709 * 73.37867 * 20 18 17 23 23 C 1.76206 * 104.44884 * 184.99896 * 20 18 17 24 24 C 1.38226 * 120.00296 * 269.73096 * 23 20 18 25 25 C 1.38238 * 120.00393 * 179.78780 * 24 23 20 26 26 C 1.38236 * 119.99608 * 0.45953 * 25 24 23 27 27 C 1.38241 * 119.99842 * 359.76987 * 26 25 24 28 28 C 1.38230 * 120.00350 * 0.02562 * 27 26 25 29 29 C 1.53779 * 113.61259 * 254.13976 * 15 14 12 30 30 H 1.09000 * 109.47077 * 263.71071 * 1 2 3 31 31 H 1.09000 * 109.46981 * 23.70839 * 1 2 3 32 32 H 1.09006 * 109.47557 * 143.70451 * 1 2 3 33 33 H 1.07998 * 119.92026 * 0.02562 * 3 2 1 34 34 H 1.08992 * 109.47235 * 269.97539 * 5 4 3 35 35 H 1.09008 * 109.46826 * 29.97738 * 5 4 3 36 36 H 1.08996 * 109.47054 * 149.97071 * 5 4 3 37 37 H 1.08990 * 109.47199 * 45.02467 * 7 6 4 38 38 H 0.96699 * 113.99503 * 179.97438 * 8 7 6 39 39 H 1.48501 * 109.99943 * 60.00153 * 9 7 6 40 40 H 1.48498 * 109.99963 * 181.31773 * 9 7 6 41 41 H 1.08000 * 120.07961 * 179.97438 * 10 6 4 42 42 H 0.96998 * 119.99989 * 359.73420 * 14 12 11 43 43 H 1.08999 * 113.61179 * 203.66343 * 17 15 14 44 44 H 1.09000 * 113.61613 * 334.48047 * 17 15 14 45 45 H 1.08004 * 119.99660 * 359.97438 * 24 23 20 46 46 H 1.07995 * 120.00418 * 180.24784 * 25 24 23 47 47 H 1.07995 * 119.99981 * 179.79373 * 26 25 24 48 48 H 1.08001 * 119.99496 * 180.02562 * 27 26 25 49 49 H 1.07995 * 120.00357 * 179.97438 * 28 27 26 50 50 H 1.09003 * 113.61941 * 25.43098 * 29 15 14 51 51 H 1.08994 * 113.61834 * 156.33984 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1936 0.0000 4 6 3.5820 1.1953 -0.0064 5 6 4.3307 2.5032 -0.0132 6 6 4.2812 0.0016 -0.0059 7 6 5.7883 0.0130 -0.0123 8 8 6.2564 0.3621 -1.3165 9 14 6.4240 -1.6778 0.4437 10 6 3.6020 -1.1994 0.0003 11 6 2.2065 -1.2081 0.0066 12 6 1.4720 -2.4912 0.0139 13 8 0.2625 -2.4985 0.1338 14 7 2.1443 -3.6531 -0.1071 15 6 1.4171 -4.9248 -0.0939 16 1 0.3816 -4.8237 -0.4185 17 6 2.1706 -6.0724 -0.7867 18 6 2.8169 -6.3667 0.5774 19 1 3.7406 -5.8147 0.7510 20 16 2.9756 -8.1371 0.9394 21 8 1.6943 -8.7455 1.0246 22 8 4.0106 -8.7155 0.1563 23 6 3.5945 -8.1949 2.5882 24 6 4.9580 -8.2087 2.8146 25 6 5.4435 -8.2496 4.1083 26 6 4.5654 -8.2863 5.1752 27 6 3.2017 -8.2773 4.9486 28 6 2.7162 -8.2321 3.6552 29 6 1.5775 -5.7126 1.2171 30 1 -0.3633 -0.1126 1.0215 31 1 -0.3633 0.9409 -0.4132 32 1 -0.3634 -0.8283 -0.6083 33 1 1.6583 2.1289 0.0004 34 1 4.5068 2.8156 -1.0424 35 1 3.7409 3.2621 0.5011 36 1 5.2857 2.3778 0.4970 37 1 6.1491 0.7441 0.7111 38 1 7.2199 0.3894 -1.3942 39 1 5.9389 -2.6837 -0.5350 40 1 7.9087 -1.6715 0.4721 41 1 4.1490 -2.1306 0.0002 42 1 3.1095 -3.6473 -0.2027 43 1 1.5190 -6.8706 -1.1424 44 1 2.8790 -5.7355 -1.5435 45 1 5.6441 -8.1844 1.9808 46 1 6.5089 -8.2563 4.2853 47 1 4.9446 -8.3217 6.1858 48 1 2.5156 -8.3056 5.7823 49 1 1.6509 -8.2255 3.4782 50 1 1.8086 -5.0852 2.0780 51 1 0.7642 -6.4125 1.4083 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12550010_9599494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:02:06 Heat of formation + Delta-G solvation = -43.994397 kcal Electronic energy + Delta-G solvation = -35797.614143 eV Core-core repulsion = 31143.095894 eV Total energy + Delta-G solvation = -4654.518249 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.138 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.84117 -40.60496 -40.03152 -39.25421 -38.23061 -37.69539 -37.08621 -34.92126 -34.47514 -33.06587 -32.30091 -31.99190 -29.46156 -28.65141 -27.04892 -26.80769 -25.48726 -24.17649 -23.73526 -23.70037 -22.77242 -21.22424 -20.74410 -19.91115 -19.15935 -18.72425 -18.56857 -17.95168 -17.47427 -17.01436 -16.95000 -16.74185 -16.34741 -16.25872 -16.17875 -15.76310 -15.53582 -15.42733 -15.16903 -14.85134 -14.63172 -14.57735 -14.48785 -14.25973 -14.07248 -14.01053 -13.91218 -13.76539 -13.69416 -13.34914 -13.25416 -13.23415 -13.15299 -13.13226 -12.87805 -12.75880 -12.60648 -12.21145 -12.11976 -12.03282 -11.88495 -11.84236 -11.75128 -11.23704 -10.79218 -10.43931 -10.35875 -10.26028 -10.03441 -9.89763 -9.62133 -4.97199 -1.00929 -0.25765 -0.16962 0.16454 0.30740 1.25393 1.54839 1.68260 1.77056 1.89282 1.94746 2.43382 2.60472 2.73066 2.88858 3.06007 3.31116 3.34937 3.48725 3.59036 3.63692 3.75404 3.79997 3.83892 3.88162 3.95969 4.11474 4.11627 4.16358 4.39417 4.40134 4.44411 4.44726 4.48824 4.51801 4.55364 4.58837 4.67249 4.69948 4.71841 4.77923 4.81250 4.84319 4.86934 4.91889 4.96345 5.06553 5.09254 5.12896 5.26369 5.28395 5.40569 5.42764 5.49416 5.51004 5.80866 5.87160 6.36827 6.59406 7.08163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.024 4.024 3 C -0.137 4.137 4 C -0.032 4.032 5 C -0.119 4.119 6 C -0.100 4.100 7 C -0.083 4.083 8 O -0.552 6.552 9 Si 0.742 3.258 10 C -0.074 4.074 11 C -0.160 4.160 12 C 0.563 3.437 13 O -0.553 6.553 14 N -0.702 5.702 15 C 0.131 3.869 16 H 0.108 0.892 17 C -0.123 4.123 18 C -0.580 4.580 19 H 0.184 0.816 20 S 2.501 3.499 21 O -0.964 6.964 22 O -0.974 6.974 23 C -0.665 4.665 24 C -0.043 4.043 25 C -0.146 4.146 26 C -0.069 4.069 27 C -0.147 4.147 28 C -0.039 4.039 29 C -0.121 4.121 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.394 0.606 39 H -0.276 1.276 40 H -0.284 1.284 41 H 0.143 0.857 42 H 0.410 0.590 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.147 0.853 46 H 0.153 0.847 47 H 0.155 0.845 48 H 0.152 0.848 49 H 0.147 0.853 50 H 0.104 0.896 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.220 5.409 5.384 9.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.025 4.025 3 C -0.155 4.155 4 C -0.033 4.033 5 C -0.175 4.175 6 C -0.100 4.100 7 C -0.191 4.191 8 O -0.362 6.362 9 Si 0.647 3.353 10 C -0.092 4.092 11 C -0.163 4.163 12 C 0.353 3.647 13 O -0.433 6.433 14 N -0.354 5.354 15 C 0.024 3.976 16 H 0.126 0.874 17 C -0.162 4.162 18 C -0.693 4.693 19 H 0.202 0.798 20 S 2.687 3.313 21 O -0.961 6.961 22 O -0.971 6.971 23 C -0.753 4.753 24 C -0.062 4.062 25 C -0.165 4.165 26 C -0.087 4.087 27 C -0.166 4.166 28 C -0.058 4.058 29 C -0.161 4.161 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.165 0.835 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.245 0.755 39 H -0.203 1.203 40 H -0.211 1.211 41 H 0.160 0.840 42 H 0.248 0.752 43 H 0.135 0.865 44 H 0.131 0.869 45 H 0.165 0.835 46 H 0.171 0.829 47 H 0.172 0.828 48 H 0.169 0.831 49 H 0.164 0.836 50 H 0.123 0.877 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.038 3.975 4.585 7.289 hybrid contribution 1.473 0.867 -0.380 1.751 sum 5.511 4.843 4.205 8.456 Atomic orbital electron populations 1.21028 0.89896 1.03203 1.03293 1.20230 0.97081 0.91879 0.93307 1.21201 0.93604 0.98120 1.02539 1.20263 0.93615 0.95990 0.93385 1.20942 1.00559 0.92858 1.03147 1.19200 0.94355 0.92739 1.03702 1.24924 0.93391 1.12592 0.88209 1.86575 1.28358 1.91377 1.29932 0.94473 0.78471 0.74578 0.87826 1.21278 0.92757 0.98349 0.96806 1.19617 0.93508 0.92909 1.10239 1.18357 0.86757 0.84081 0.75526 1.90748 1.14815 1.87430 1.50270 1.45515 1.11241 1.04509 1.74174 1.21673 0.97511 0.82046 0.96382 0.87426 1.23231 1.00118 0.99301 0.93593 1.31743 1.09439 1.20744 1.07332 0.79803 1.05105 0.73451 0.78582 0.74204 1.93539 1.41871 1.74343 1.86383 1.93529 1.58242 1.76074 1.69260 1.30381 1.03215 1.19525 1.22186 1.21215 0.93257 0.92510 0.99199 1.21670 1.01775 1.00797 0.92213 1.21917 0.93466 0.92547 1.00758 1.21675 0.96734 1.00847 0.97350 1.21201 1.00038 0.92149 0.92378 1.23346 0.94130 0.99551 0.99058 0.90743 0.90896 0.90418 0.83495 0.90659 0.90081 0.90075 0.88513 0.75525 1.20260 1.21081 0.83957 0.75198 0.86509 0.86904 0.83547 0.82882 0.82768 0.83065 0.83552 0.87703 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.44 8.72 71.23 0.62 0.18 16 2 C -0.02 -0.09 5.91 -19.61 -0.12 -0.20 16 3 C -0.14 -0.12 9.31 22.23 0.21 0.09 16 4 C -0.03 0.00 5.89 -19.81 -0.12 -0.12 16 5 C -0.12 0.44 9.53 71.24 0.68 1.12 16 6 C -0.10 0.04 5.29 -19.90 -0.11 -0.07 16 7 C -0.08 0.34 2.03 71.24 0.14 0.48 16 8 O -0.55 0.89 12.78 -148.98 -1.90 -1.02 16 9 Si 0.74 -4.47 30.19 68.60 2.07 -2.40 16 10 C -0.07 0.05 8.13 22.53 0.18 0.23 16 11 C -0.16 -0.46 5.87 -20.09 -0.12 -0.58 16 12 C 0.56 2.16 7.70 86.79 0.67 2.83 16 13 O -0.55 -5.41 12.97 -3.87 -0.05 -5.46 16 14 N -0.70 1.64 5.21 -442.92 -2.31 -0.67 16 15 C 0.13 -0.39 4.30 45.52 0.20 -0.19 16 16 H 0.11 -0.01 7.50 -2.39 -0.02 -0.03 16 17 C -0.12 0.68 7.41 31.12 0.23 0.91 16 18 C -0.58 3.47 4.21 31.22 0.13 3.60 16 19 H 0.18 -2.22 8.14 -2.39 -0.02 -2.24 16 20 S 2.50 4.86 5.09 -56.49 -0.29 4.57 16 21 O -0.96 -7.54 16.46 -127.65 -2.10 -9.64 16 22 O -0.97 -8.53 17.12 -127.65 -2.19 -10.71 16 23 C -0.67 -0.86 5.66 22.27 0.13 -0.73 16 24 C -0.04 0.00 9.47 22.27 0.21 0.21 16 25 C -0.15 0.38 10.05 22.27 0.22 0.60 16 26 C -0.07 0.24 10.05 22.27 0.22 0.47 16 27 C -0.15 0.32 10.05 22.27 0.22 0.54 16 28 C -0.04 -0.01 9.47 22.27 0.21 0.20 16 29 C -0.12 0.62 7.46 31.21 0.23 0.86 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.04 8.04 -2.39 -0.02 0.02 16 32 H 0.08 0.60 5.87 -2.38 -0.01 0.59 16 33 H 0.15 -0.41 8.06 -2.91 -0.02 -0.43 16 34 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.08 -0.47 8.08 -2.38 -0.02 -0.49 16 36 H 0.08 -0.46 6.22 -2.39 -0.01 -0.48 16 37 H 0.10 -0.77 6.48 -2.39 -0.02 -0.78 16 38 H 0.39 -3.62 8.74 -74.06 -0.65 -4.27 16 39 H -0.28 0.60 6.75 99.48 0.67 1.27 16 40 H -0.28 0.38 7.11 99.48 0.71 1.09 16 41 H 0.14 -0.74 3.28 -2.91 -0.01 -0.75 16 42 H 0.41 -2.86 6.78 -92.71 -0.63 -3.48 16 43 H 0.12 -0.72 8.10 -2.39 -0.02 -0.74 16 44 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 45 H 0.15 -0.32 7.56 -2.91 -0.02 -0.34 16 46 H 0.15 -1.13 8.06 -2.91 -0.02 -1.15 16 47 H 0.15 -1.34 8.06 -2.91 -0.02 -1.36 16 48 H 0.15 -0.99 8.06 -2.91 -0.02 -1.01 16 49 H 0.15 -0.26 7.57 -2.91 -0.02 -0.28 16 50 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 51 H 0.12 -0.60 7.55 -2.39 -0.02 -0.62 16 Total: 0.00 -29.00 424.89 -2.99 -31.99 By element: Atomic # 1 Polarization: -16.78 SS G_CDS: -0.28 Total: -17.06 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 4.06 Total: 10.41 kcal Atomic # 7 Polarization: 1.64 SS G_CDS: -2.31 Total: -0.67 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -6.24 Total: -26.84 kcal Atomic # 14 Polarization: -4.47 SS G_CDS: 2.07 Total: -2.40 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -0.29 Total: 4.57 kcal Total: -29.00 -2.99 -31.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12550010_9599494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.009 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds