Wall clock time and date at job start Sat Mar 6 2021 19:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47156 * 2 1 4 4 C 1.35900 * 116.99810 * 275.31457 * 3 2 1 5 5 C 1.38735 * 120.05531 * 5.09366 * 4 3 2 6 6 C 1.38151 * 119.94120 * 179.69658 * 5 4 3 7 7 C 1.38265 * 120.05764 * 0.59138 * 6 5 4 8 8 C 1.50699 * 119.94357 * 179.70214 * 7 6 5 9 9 O 1.42897 * 109.47008 * 119.97920 * 8 7 6 10 10 Si 1.86297 * 109.47059 * 359.97438 * 8 7 6 11 11 C 1.38271 * 120.10646 * 359.67988 * 7 6 5 12 12 C 1.38136 * 120.05882 * 0.02562 * 11 7 6 13 13 C 1.50707 * 109.46769 * 119.99708 * 2 1 3 14 14 O 1.21283 * 119.99957 * 245.00346 * 13 2 1 15 15 N 1.34771 * 120.00052 * 64.99914 * 13 2 1 16 16 C 1.46497 * 119.99914 * 179.72410 * 15 13 2 17 17 H 1.08997 * 112.85518 * 336.47498 * 16 15 13 18 18 C 1.53782 * 113.61405 * 107.78259 * 16 15 13 19 19 C 1.53779 * 87.08551 * 139.98034 * 18 16 15 20 20 H 1.08996 * 113.69250 * 89.12062 * 19 18 16 21 21 C 1.50701 * 113.61447 * 220.01912 * 19 18 16 22 22 O 1.20826 * 119.99612 * 97.49719 * 21 19 18 23 23 O 1.34224 * 119.99712 * 277.49260 * 21 19 18 24 24 C 1.45200 * 117.00015 * 180.02562 * 23 21 19 25 25 C 1.53010 * 109.47041 * 59.99915 * 24 23 21 26 26 C 1.52995 * 109.47586 * 180.02562 * 24 23 21 27 27 C 1.53002 * 109.47371 * 300.00591 * 24 23 21 28 28 C 1.53778 * 87.07888 * 334.56760 * 19 18 16 29 29 H 1.09001 * 109.46556 * 60.00622 * 1 2 3 30 30 H 1.08998 * 109.47161 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47399 * 300.00453 * 1 2 3 32 32 H 1.09003 * 109.47212 * 239.99587 * 2 1 3 33 33 H 1.08003 * 120.02726 * 359.97438 * 5 4 3 34 34 H 1.07997 * 119.96498 * 180.31607 * 6 5 4 35 35 H 1.09004 * 109.46752 * 239.97403 * 8 7 6 36 36 H 0.96703 * 114.00204 * 179.97438 * 9 8 7 37 37 H 1.48503 * 110.00130 * 60.00313 * 10 8 7 38 38 H 1.48507 * 109.99647 * 181.32017 * 10 8 7 39 39 H 1.08002 * 119.96657 * 180.02562 * 11 7 6 40 40 H 1.08003 * 120.02669 * 180.02562 * 12 11 7 41 41 H 0.97006 * 120.00186 * 0.02562 * 15 13 2 42 42 H 1.09001 * 113.61314 * 254.53100 * 18 16 15 43 43 H 1.09003 * 113.61415 * 25.42856 * 18 16 15 44 44 H 1.08999 * 109.46981 * 60.00249 * 25 24 23 45 45 H 1.08995 * 109.46807 * 179.97438 * 25 24 23 46 46 H 1.08991 * 109.47138 * 300.00418 * 25 24 23 47 47 H 1.08996 * 109.46875 * 59.99976 * 26 24 23 48 48 H 1.08999 * 109.47094 * 179.97438 * 26 24 23 49 49 H 1.08999 * 109.47002 * 300.00096 * 26 24 23 50 50 H 1.09004 * 109.47148 * 59.99033 * 27 24 23 51 51 H 1.08992 * 109.47342 * 179.97438 * 27 24 23 52 52 H 1.09010 * 109.46855 * 299.99767 * 27 24 23 53 53 H 1.09007 * 113.61214 * 270.88392 * 28 19 18 54 54 H 1.09000 * 113.61632 * 139.98327 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.1063 1.9663 -1.2057 5 6 1.6546 1.3302 -2.3529 6 6 1.7516 1.9642 -3.5765 7 6 2.3093 3.2266 -3.6601 8 6 2.4199 3.9130 -4.9971 9 8 1.6860 5.1387 -4.9653 10 14 1.7228 2.8058 -6.3232 11 6 2.7653 3.8603 -2.5189 12 6 2.6651 3.2331 -1.2922 13 6 2.0323 -0.7104 1.2306 14 8 2.6529 -0.0978 2.0736 15 7 1.7918 -2.0263 1.3943 16 6 2.2853 -2.7182 2.5877 17 1 3.1383 -2.2171 3.0451 18 6 1.1771 -3.0883 3.5876 19 6 1.9167 -4.4207 3.7938 20 1 2.6687 -4.3867 4.5821 21 6 0.9978 -5.6092 3.9124 22 8 0.7801 -6.3031 2.9475 23 8 0.4214 -5.8969 5.0900 24 6 -0.4515 -7.0566 5.1308 25 6 0.3427 -8.3064 4.7455 26 6 -1.0120 -7.2236 6.5445 27 6 -1.6052 -6.8616 4.1449 28 6 2.4951 -4.2277 2.3821 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8898 32 1 1.8934 -0.5139 -0.8900 33 1 1.2234 0.3420 -2.2888 34 1 1.3954 1.4714 -4.4691 35 1 3.4678 4.1225 -5.2123 36 1 1.7135 5.6352 -5.7947 37 1 0.2945 2.5127 -6.0413 38 1 1.8550 3.4581 -7.6508 39 1 3.2002 4.8465 -2.5867 40 1 3.0211 3.7288 -0.4011 41 1 1.2957 -2.5164 0.7200 42 1 1.1609 -2.4559 4.4752 43 1 0.1947 -3.2007 3.1288 44 1 1.1646 -8.4454 5.4478 45 1 -0.3124 -9.1769 4.7766 46 1 0.7417 -8.1872 3.7383 47 1 -1.5779 -6.3332 6.8185 48 1 -1.6676 -8.0939 6.5749 49 1 -0.1903 -7.3624 7.2471 50 1 -1.2061 -6.7423 3.1376 51 1 -2.2601 -7.7323 4.1753 52 1 -2.1710 -5.9711 4.4193 53 1 1.8731 -4.6516 1.5937 54 1 3.5430 -4.5152 2.2964 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12626394_10157680.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:31:09 Heat of formation + Delta-G solvation = -130.492246 kcal Electronic energy + Delta-G solvation = -34359.660710 eV Core-core repulsion = 29650.924137 eV Total energy + Delta-G solvation = -4708.736573 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.197 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.22090 -41.74986 -40.81470 -39.63406 -38.83316 -37.70879 -37.33136 -35.16548 -34.81102 -33.10981 -31.88130 -31.59948 -28.41413 -28.34305 -27.92497 -26.83262 -26.66382 -25.42071 -24.21628 -23.22774 -22.26216 -21.51558 -21.10068 -20.35456 -19.51919 -18.70983 -18.55201 -18.30398 -17.64679 -17.25366 -17.10874 -16.86107 -16.74523 -16.48807 -16.17866 -15.77237 -15.72472 -15.56569 -15.29429 -15.20072 -14.65433 -14.60561 -14.55750 -14.25624 -14.03931 -13.86530 -13.65752 -13.59641 -13.43560 -13.38375 -13.34943 -13.13180 -12.97172 -12.90685 -12.89860 -12.62264 -12.46824 -12.43997 -12.42332 -12.10511 -12.02270 -11.92242 -11.73629 -11.69397 -11.41950 -11.00176 -10.86935 -10.47639 -10.19466 -10.03929 -9.21046 -4.91847 0.26271 0.30129 1.13073 1.32438 1.38679 1.43232 1.61820 1.73201 1.96510 2.51220 2.61304 3.24001 3.31664 3.40938 3.46079 3.61483 3.65429 3.68669 3.72910 3.76324 3.80231 3.82914 3.85658 3.91623 3.97662 3.98945 4.27838 4.35811 4.43551 4.48004 4.54438 4.56680 4.57877 4.59699 4.62579 4.64431 4.71083 4.72603 4.76879 4.81696 4.83869 4.90699 4.93178 4.96268 5.04480 5.08920 5.09444 5.18250 5.21543 5.24533 5.24952 5.41787 5.50088 5.55127 5.68856 6.25104 6.43434 6.60663 6.78386 7.06979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.062 3.938 3 O -0.312 6.312 4 C 0.121 3.879 5 C -0.202 4.202 6 C -0.077 4.077 7 C -0.124 4.124 8 C -0.084 4.084 9 O -0.560 6.560 10 Si 0.766 3.234 11 C -0.060 4.060 12 C -0.166 4.166 13 C 0.520 3.480 14 O -0.566 6.566 15 N -0.698 5.698 16 C 0.125 3.875 17 H 0.113 0.887 18 C -0.129 4.129 19 C -0.109 4.109 20 H 0.144 0.856 21 C 0.474 3.526 22 O -0.521 6.521 23 O -0.357 6.357 24 C 0.107 3.893 25 C -0.180 4.180 26 C -0.140 4.140 27 C -0.179 4.179 28 C -0.114 4.114 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.132 0.868 33 H 0.163 0.837 34 H 0.151 0.849 35 H 0.093 0.907 36 H 0.394 0.606 37 H -0.296 1.296 38 H -0.289 1.289 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.420 0.580 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.068 0.932 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.063 0.937 53 H 0.105 0.895 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.809 -5.759 -2.920 6.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.003 3.997 3 O -0.225 6.225 4 C 0.076 3.924 5 C -0.220 4.220 6 C -0.094 4.094 7 C -0.124 4.124 8 C -0.193 4.193 9 O -0.370 6.370 10 Si 0.672 3.328 11 C -0.078 4.078 12 C -0.184 4.184 13 C 0.306 3.694 14 O -0.443 6.443 15 N -0.351 5.351 16 C 0.020 3.980 17 H 0.130 0.870 18 C -0.168 4.168 19 C -0.129 4.129 20 H 0.161 0.839 21 C 0.319 3.681 22 O -0.410 6.410 23 O -0.274 6.274 24 C 0.071 3.929 25 C -0.237 4.237 26 C -0.197 4.197 27 C -0.236 4.236 28 C -0.152 4.152 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.181 0.819 34 H 0.169 0.831 35 H 0.110 0.890 36 H 0.244 0.756 37 H -0.223 1.223 38 H -0.216 1.216 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.258 0.742 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.112 0.888 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.103 0.897 52 H 0.082 0.918 53 H 0.123 0.877 54 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.118 -5.769 -2.406 6.350 hybrid contribution -0.484 1.080 -0.325 1.227 sum -1.602 -4.689 -2.731 5.658 Atomic orbital electron populations 1.22374 0.90794 1.05667 1.04288 1.22456 0.96996 0.82166 0.98125 1.86192 1.81409 1.27070 1.27846 1.19215 0.95828 0.92985 0.84412 1.21466 1.06357 1.02786 0.91372 1.21008 0.96463 0.94007 0.97931 1.19451 1.02764 0.95567 0.94632 1.25016 1.00575 0.91633 1.02042 1.86549 1.74859 1.34474 1.41136 0.94240 0.80208 0.85232 0.73164 1.20922 0.96848 0.99345 0.90735 1.20623 1.04353 0.94371 0.99091 1.20505 0.78812 0.82814 0.87264 1.90753 1.41398 1.66853 1.45308 1.45686 1.57180 1.07963 1.24290 1.22427 0.97606 0.92084 0.85859 0.86955 1.23411 0.99022 0.93610 1.00720 1.22425 0.97945 0.90526 1.01995 0.83864 1.23700 0.78641 0.85357 0.80445 1.90580 1.60393 1.50446 1.39588 1.86572 1.57710 1.47477 1.35645 1.22434 0.88989 0.83122 0.98342 1.22459 1.01191 0.97253 1.02836 1.21884 1.01691 1.03684 0.92451 1.22454 0.97697 1.03516 0.99975 1.23315 1.03636 0.93290 0.94961 0.89707 0.87212 0.92294 0.85104 0.81926 0.83147 0.88963 0.75582 1.22314 1.21628 0.84723 0.85332 0.74192 0.89466 0.88758 0.91858 0.89649 0.91576 0.91351 0.88760 0.91341 0.91469 0.89701 0.91828 0.87685 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.92 9.12 71.98 0.66 1.57 16 2 C 0.06 -0.07 2.64 29.85 0.08 0.01 16 3 O -0.31 -2.25 9.34 -73.44 -0.69 -2.94 16 4 C 0.12 0.62 6.60 22.51 0.15 0.77 16 5 C -0.20 0.07 8.24 22.37 0.18 0.25 16 6 C -0.08 0.01 8.66 22.26 0.19 0.20 16 7 C -0.12 -0.34 5.42 -19.85 -0.11 -0.45 16 8 C -0.08 0.03 2.81 71.24 0.20 0.23 16 9 O -0.56 -1.53 12.74 -148.98 -1.90 -3.43 16 10 Si 0.77 -2.11 29.78 68.60 2.04 -0.06 16 11 C -0.06 -0.29 9.60 22.25 0.21 -0.08 16 12 C -0.17 -1.08 9.99 22.36 0.22 -0.86 16 13 C 0.52 1.47 7.18 87.66 0.63 2.10 16 14 O -0.57 -7.69 16.11 15.95 0.26 -7.43 16 15 N -0.70 3.14 5.32 -440.04 -2.34 0.80 16 16 C 0.13 -0.45 4.24 45.52 0.19 -0.25 16 17 H 0.11 -0.03 7.46 -2.39 -0.02 -0.04 16 18 C -0.13 0.50 7.43 31.12 0.23 0.73 16 19 C -0.11 0.41 4.26 -11.01 -0.05 0.36 16 20 H 0.14 -0.93 8.14 -2.39 -0.02 -0.95 16 21 C 0.47 0.84 6.79 71.24 0.48 1.32 16 22 O -0.52 -2.84 11.40 21.96 0.25 -2.59 16 23 O -0.36 -1.01 9.89 -51.36 -0.51 -1.52 16 24 C 0.11 0.09 1.13 -10.79 -0.01 0.07 16 25 C -0.18 -0.15 8.37 71.99 0.60 0.45 16 26 C -0.14 0.38 8.85 71.98 0.64 1.02 16 27 C -0.18 -0.06 8.37 71.98 0.60 0.54 16 28 C -0.11 0.64 7.16 31.12 0.22 0.86 16 29 H 0.08 -0.50 6.91 -2.39 -0.02 -0.51 16 30 H 0.11 -1.27 7.93 -2.39 -0.02 -1.29 16 31 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.13 -1.00 6.31 -2.39 -0.02 -1.02 16 33 H 0.16 -1.18 5.43 -2.91 -0.02 -1.20 16 34 H 0.15 -0.78 4.87 -2.91 -0.01 -0.79 16 35 H 0.09 -0.37 7.96 -2.38 -0.02 -0.38 16 36 H 0.39 -2.09 8.74 -74.06 -0.65 -2.74 16 37 H -0.30 -1.17 7.11 99.48 0.71 -0.47 16 38 H -0.29 -0.50 7.11 99.48 0.71 0.21 16 39 H 0.13 0.43 8.06 -2.91 -0.02 0.40 16 40 H 0.13 0.83 8.06 -2.91 -0.02 0.81 16 41 H 0.42 -4.62 8.51 -92.70 -0.79 -5.41 16 42 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.09 -0.39 8.09 -2.39 -0.02 -0.41 16 44 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.07 0.31 5.89 -2.39 -0.01 0.29 16 47 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 48 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 49 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 50 H 0.07 0.26 5.89 -2.38 -0.01 0.25 16 51 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 52 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 53 H 0.10 -0.56 7.41 -2.38 -0.02 -0.58 16 54 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 Total: 0.00 -26.52 432.73 1.99 -24.54 By element: Atomic # 1 Polarization: -15.77 SS G_CDS: -0.47 Total: -16.24 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 5.33 Total: 8.87 kcal Atomic # 7 Polarization: 3.14 SS G_CDS: -2.34 Total: 0.80 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -2.58 Total: -17.90 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: 2.04 Total: -0.06 kcal Total: -26.52 1.99 -24.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12626394_10157680.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.955 kcal (2) G-P(sol) polarization free energy of solvation -26.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds