Wall clock time and date at job start Sat Mar 6 2021 19:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47056 * 2 1 4 4 C 1.53000 * 109.47234 * 239.99991 * 2 1 3 5 5 O 1.45198 * 109.47081 * 120.00327 * 2 1 3 6 6 C 1.34230 * 117.00489 * 60.00143 * 5 2 1 7 7 O 1.20824 * 119.99945 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00412 * 180.02562 * 6 5 2 9 9 H 1.09005 * 112.90203 * 311.24923 * 8 6 5 10 10 C 1.53780 * 113.61826 * 82.49474 * 8 6 5 11 11 C 1.53785 * 87.08093 * 139.98343 * 10 8 6 12 12 H 1.08995 * 113.68902 * 89.12859 * 11 10 8 13 13 N 1.46493 * 113.61537 * 220.02199 * 11 10 8 14 14 C 1.34775 * 120.00158 * 252.49919 * 13 11 10 15 15 O 1.21693 * 119.99904 * 359.97438 * 14 13 11 16 16 C 1.46682 * 120.00420 * 180.02562 * 14 13 11 17 17 C 1.37869 * 126.23911 * 179.97438 * 16 14 13 18 18 C 1.39831 * 107.08662 * 179.97438 * 17 16 14 19 19 C 1.50706 * 126.06313 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.47147 * 299.99836 * 19 18 17 21 21 Si 1.86299 * 109.46748 * 180.02562 * 19 18 17 22 22 C 1.35452 * 107.86650 * 0.24279 * 18 17 16 23 23 N 1.35533 * 108.86713 * 359.60053 * 22 18 17 24 24 C 1.53778 * 113.61674 * 179.97438 * 8 6 5 25 25 H 1.09002 * 109.47157 * 299.99404 * 1 2 3 26 26 H 1.08998 * 109.47248 * 59.99835 * 1 2 3 27 27 H 1.09003 * 109.46899 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47548 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47227 * 300.00178 * 3 2 1 30 30 H 1.09003 * 109.47328 * 59.99966 * 3 2 1 31 31 H 1.09000 * 109.47111 * 300.00652 * 4 2 1 32 32 H 1.09004 * 109.46902 * 59.99512 * 4 2 1 33 33 H 1.08999 * 109.47378 * 180.02562 * 4 2 1 34 34 H 1.09002 * 113.61193 * 25.43692 * 10 8 6 35 35 H 1.08994 * 113.61877 * 254.53190 * 10 8 6 36 36 H 0.97001 * 120.00256 * 72.50206 * 13 11 10 37 37 H 1.08007 * 126.44973 * 359.97438 * 17 16 14 38 38 H 1.09001 * 109.46740 * 60.00235 * 19 18 17 39 39 H 0.96695 * 114.00385 * 300.00674 * 20 19 18 40 40 H 1.48504 * 109.99999 * 180.02562 * 21 19 18 41 41 H 1.48504 * 110.00212 * 301.31915 * 21 19 18 42 42 H 1.07997 * 125.55922 * 179.71740 * 22 18 17 43 43 H 0.96998 * 125.67157 * 180.13317 * 23 22 18 44 44 H 1.09003 * 113.61424 * 105.46700 * 24 8 6 45 45 H 1.09001 * 113.61429 * 334.56125 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9685 1.3378 7 8 0.9560 -2.5026 0.5082 8 6 2.1174 -2.7435 2.5440 9 1 3.1877 -2.6449 2.7257 10 6 1.2560 -2.5085 3.7961 11 6 1.4001 -4.0128 4.0813 12 1 2.2737 -4.2627 4.6833 13 7 0.1706 -4.6366 4.5767 14 6 0.0756 -5.0053 5.8695 15 8 1.0113 -4.8204 6.6253 16 6 -1.1552 -5.6304 6.3654 17 6 -1.3907 -6.0558 7.6556 18 6 -2.6843 -6.5859 7.6837 19 6 -3.3761 -7.1741 8.8865 20 8 -2.6236 -8.2878 9.3715 21 14 -5.0838 -7.7417 8.4048 22 6 -3.2030 -6.4825 6.4367 23 7 -2.2859 -5.8985 5.6276 24 6 1.6190 -4.1980 2.5709 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 0.2341 -2.2026 3.5718 35 1 1.7344 -1.8748 4.5427 36 1 -0.5751 -4.7843 3.9742 37 1 -0.7050 -5.9916 8.4876 38 1 -3.4511 -6.4181 9.6682 39 1 -2.5164 -9.0007 8.7271 40 1 -5.7768 -8.3232 9.5824 41 1 -5.8664 -6.5992 7.8685 42 1 -4.1875 -6.8101 6.1369 43 1 -2.4049 -5.7056 4.6845 44 1 2.3907 -4.9286 2.3281 45 1 0.6963 -4.3538 2.0118 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12626394_10543058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:31:14 Heat of formation + Delta-G solvation = -83.052482 kcal Electronic energy + Delta-G solvation = -27091.973121 eV Core-core repulsion = 23077.851350 eV Total energy + Delta-G solvation = -4014.121771 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.52247 -42.14861 -40.73598 -39.28768 -37.73856 -37.62960 -35.16837 -34.67713 -32.48995 -30.78516 -28.43801 -28.36360 -28.00869 -26.86880 -26.39735 -24.50357 -22.89654 -21.45172 -21.14250 -20.82826 -20.42661 -19.74053 -18.67358 -17.67433 -17.48532 -17.16092 -17.12351 -16.57364 -16.49551 -16.14657 -15.85217 -15.63849 -15.32018 -15.11996 -14.69612 -14.63925 -14.57363 -14.36285 -13.93239 -13.69322 -13.61787 -13.47799 -13.42205 -13.15851 -12.99511 -12.92070 -12.65384 -12.49234 -12.45234 -12.25951 -12.05848 -11.95952 -11.76920 -11.44511 -11.33387 -10.97716 -10.36249 -10.29517 -9.92972 -9.28909 -4.92229 0.34468 1.10413 1.40678 1.53607 1.57754 1.73310 1.97842 2.09733 2.15876 2.22991 3.20354 3.29671 3.58737 3.61927 3.68280 3.69711 3.74047 3.78418 3.89347 3.95256 3.99302 4.16790 4.37274 4.47176 4.52185 4.53806 4.54599 4.59026 4.66292 4.70301 4.74244 4.78604 4.81696 4.87112 4.88682 4.89503 5.00291 5.04479 5.07050 5.19145 5.22710 5.36322 5.52176 5.58529 5.73407 6.32002 6.50438 6.75306 6.91176 7.01789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.107 3.893 3 C -0.140 4.140 4 C -0.180 4.180 5 O -0.357 6.357 6 C 0.474 3.526 7 O -0.521 6.521 8 C -0.108 4.108 9 H 0.146 0.854 10 C -0.130 4.130 11 C 0.125 3.875 12 H 0.116 0.884 13 N -0.705 5.705 14 C 0.591 3.409 15 O -0.572 6.572 16 C -0.071 4.071 17 C -0.103 4.103 18 C -0.228 4.228 19 C -0.052 4.052 20 O -0.566 6.566 21 Si 0.800 3.200 22 C 0.059 3.941 23 N -0.516 5.516 24 C -0.114 4.114 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.411 0.589 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.393 0.607 40 H -0.310 1.310 41 H -0.273 1.273 42 H 0.215 0.785 43 H 0.436 0.564 44 H 0.099 0.901 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.274 -0.420 -7.251 7.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.071 3.929 3 C -0.197 4.197 4 C -0.237 4.237 5 O -0.274 6.274 6 C 0.319 3.681 7 O -0.410 6.410 8 C -0.128 4.128 9 H 0.163 0.837 10 C -0.168 4.168 11 C 0.020 3.980 12 H 0.134 0.866 13 N -0.356 5.356 14 C 0.380 3.620 15 O -0.451 6.451 16 C -0.184 4.184 17 C -0.130 4.130 18 C -0.234 4.234 19 C -0.161 4.161 20 O -0.373 6.373 21 Si 0.705 3.295 22 C -0.079 4.079 23 N -0.113 5.113 24 C -0.152 4.152 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.248 0.752 37 H 0.142 0.858 38 H 0.109 0.891 39 H 0.243 0.757 40 H -0.239 1.239 41 H -0.199 1.199 42 H 0.231 0.769 43 H 0.278 0.722 44 H 0.117 0.883 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.589 0.122 -6.541 7.462 hybrid contribution 0.215 0.681 -0.182 0.737 sum -3.374 0.803 -6.723 7.565 Atomic orbital electron populations 1.22454 0.93873 1.03717 1.03612 1.22436 0.94625 0.93198 0.82625 1.21887 1.02408 0.91423 1.04002 1.22459 1.01799 1.02153 0.97313 1.86573 1.69664 1.25501 1.45666 1.23690 0.76772 0.80578 0.87093 1.90575 1.36233 1.70350 1.43862 1.22423 1.03794 0.95643 0.90905 0.83652 1.23410 1.00437 0.97642 0.95354 1.22449 0.88401 0.92163 0.94968 0.86611 1.45678 1.18348 1.62045 1.09504 1.17257 0.85498 0.76966 0.82265 1.90850 1.39779 1.57169 1.57283 1.20130 0.89887 1.14952 0.93402 1.21216 0.97083 0.99747 0.94959 1.19961 0.96401 1.10782 0.96274 1.24727 1.06319 0.90128 0.94941 1.86450 1.76873 1.29843 1.44169 0.93903 0.70642 0.82276 0.82667 1.22372 0.96362 0.99774 0.89372 1.41873 1.10999 1.46185 1.12276 1.23303 1.03772 0.94079 0.94075 0.91896 0.89642 0.91501 0.91300 0.88718 0.91384 0.91595 0.89611 0.91817 0.89141 0.89310 0.75209 0.85775 0.89097 0.75695 1.23864 1.19943 0.76904 0.72223 0.88262 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.08 8.37 71.98 0.60 0.52 16 2 C 0.11 0.09 1.13 -10.80 -0.01 0.08 16 3 C -0.14 0.38 8.85 71.98 0.64 1.01 16 4 C -0.18 -0.14 8.37 71.98 0.60 0.46 16 5 O -0.36 -1.07 9.89 -51.41 -0.51 -1.57 16 6 C 0.47 0.93 6.79 71.23 0.48 1.41 16 7 O -0.52 -2.89 11.40 21.97 0.25 -2.64 16 8 C -0.11 0.38 4.26 -11.02 -0.05 0.33 16 9 H 0.15 -0.94 8.14 -2.38 -0.02 -0.96 16 10 C -0.13 0.41 7.43 31.12 0.23 0.64 16 11 C 0.13 -0.35 4.24 45.51 0.19 -0.16 16 12 H 0.12 0.02 7.46 -2.39 -0.02 0.00 16 13 N -0.71 2.02 5.35 -444.07 -2.38 -0.35 16 14 C 0.59 2.90 7.79 86.45 0.67 3.58 16 15 O -0.57 -8.09 16.48 -4.33 -0.07 -8.16 16 16 C -0.07 -0.16 7.06 40.35 0.28 0.12 16 17 C -0.10 -0.63 10.59 22.57 0.24 -0.39 16 18 C -0.23 -0.09 5.44 -20.12 -0.11 -0.20 16 19 C -0.05 -0.03 3.02 71.24 0.22 0.18 16 20 O -0.57 -1.62 12.88 -148.98 -1.92 -3.53 16 21 Si 0.80 -3.59 30.59 68.60 2.10 -1.49 16 22 C 0.06 -0.38 10.45 83.48 0.87 0.49 16 23 N -0.52 3.40 5.99 -183.62 -1.10 2.30 16 24 C -0.11 0.59 7.15 31.11 0.22 0.81 16 25 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 26 H 0.08 -0.20 8.14 -2.39 -0.02 -0.21 16 27 H 0.07 0.26 5.89 -2.39 -0.01 0.25 16 28 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.07 0.31 5.89 -2.39 -0.01 0.29 16 32 H 0.09 -0.18 8.14 -2.38 -0.02 -0.19 16 33 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.09 -0.27 8.09 -2.39 -0.02 -0.29 16 35 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.41 -3.78 7.85 -92.71 -0.73 -4.51 16 37 H 0.12 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.09 0.33 7.96 -2.39 -0.02 0.31 16 39 H 0.39 -2.30 8.70 -74.06 -0.64 -2.95 16 40 H -0.31 -1.45 7.11 99.48 0.71 -0.74 16 41 H -0.27 0.49 7.11 99.48 0.71 1.20 16 42 H 0.21 -3.07 6.19 -2.91 -0.02 -3.09 16 43 H 0.44 -6.14 8.19 -92.71 -0.76 -6.90 16 44 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.10 -0.50 7.41 -2.39 -0.02 -0.52 16 Total: 0.00 -25.85 370.84 0.41 -25.44 By element: Atomic # 1 Polarization: -17.84 SS G_CDS: -1.06 Total: -18.90 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.09 Total: 8.91 kcal Atomic # 7 Polarization: 5.42 SS G_CDS: -3.48 Total: 1.94 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -2.25 Total: -15.91 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.10 Total: -1.49 kcal Total: -25.85 0.41 -25.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12626394_10543058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.613 kcal (2) G-P(sol) polarization free energy of solvation -25.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds