Wall clock time and date at job start Sat Mar 6 2021 19:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37652 * 125.67854 * 2 1 4 4 C 1.46678 * 126.23372 * 0.26591 * 3 2 1 5 5 O 1.21694 * 119.99783 * 354.16009 * 4 3 2 6 6 N 1.34782 * 119.99818 * 174.16966 * 4 3 2 7 7 C 1.46501 * 119.99650 * 185.06233 * 6 4 3 8 8 H 1.08999 * 112.85292 * 336.19838 * 7 6 4 9 9 C 1.53784 * 113.61310 * 107.50091 * 7 6 4 10 10 C 1.53782 * 87.08054 * 139.97890 * 9 7 6 11 11 H 1.09000 * 113.68442 * 89.12962 * 10 9 7 12 12 C 1.50703 * 113.61237 * 220.01812 * 10 9 7 13 13 O 1.20815 * 119.99863 * 97.50051 * 12 10 9 14 14 O 1.34232 * 119.99706 * 277.49720 * 12 10 9 15 15 C 1.45200 * 116.99484 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47529 * 59.99860 * 15 14 12 17 17 C 1.53004 * 109.46852 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.46953 * 299.99516 * 15 14 12 19 19 C 1.53779 * 87.08295 * 334.56798 * 10 9 7 20 20 C 1.37880 * 107.53206 * 180.02562 * 3 2 1 21 21 C 1.39835 * 107.08414 * 359.97438 * 20 3 2 22 22 C 1.35450 * 107.86509 * 0.02562 * 21 20 3 23 23 C 1.50699 * 125.55959 * 179.97438 * 22 21 20 24 24 O 1.42907 * 109.46952 * 209.97465 * 23 22 21 25 25 Si 1.86295 * 109.47492 * 329.97543 * 23 22 21 26 26 H 1.09003 * 109.47209 * 94.58047 * 1 2 3 27 27 H 1.09000 * 109.47522 * 214.58392 * 1 2 3 28 28 H 1.09001 * 109.46769 * 334.58564 * 1 2 3 29 29 H 0.96997 * 120.00280 * 5.05751 * 6 4 3 30 30 H 1.09001 * 113.61541 * 254.53450 * 9 7 6 31 31 H 1.09000 * 113.61251 * 25.42947 * 9 7 6 32 32 H 1.09002 * 109.46709 * 59.99785 * 16 15 14 33 33 H 1.08991 * 109.47255 * 179.97438 * 16 15 14 34 34 H 1.08994 * 109.46749 * 300.00485 * 16 15 14 35 35 H 1.08998 * 109.47156 * 59.99964 * 17 15 14 36 36 H 1.09002 * 109.46667 * 179.97438 * 17 15 14 37 37 H 1.08993 * 109.46999 * 299.99421 * 17 15 14 38 38 H 1.09006 * 109.46817 * 60.00581 * 18 15 14 39 39 H 1.09002 * 109.47265 * 179.97438 * 18 15 14 40 40 H 1.08998 * 109.47661 * 300.00407 * 18 15 14 41 41 H 1.09000 * 113.61366 * 270.88380 * 19 10 9 42 42 H 1.08996 * 113.69490 * 139.98784 * 19 10 9 43 43 H 1.08000 * 126.45287 * 180.02562 * 20 3 2 44 44 H 1.08003 * 126.06278 * 180.02562 * 21 20 3 45 45 H 1.09000 * 109.46736 * 89.98216 * 23 22 21 46 46 H 0.96700 * 113.99860 * 60.00240 * 24 23 22 47 47 H 1.48502 * 110.00243 * 179.97438 * 25 23 22 48 48 H 1.48494 * 110.00110 * 301.32219 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1181 0.0000 4 6 1.8124 2.5124 0.0055 5 8 0.6265 2.7656 -0.0966 6 7 2.7075 3.5132 0.1234 7 6 2.2459 4.8987 0.2405 8 1 1.2516 5.0505 -0.1795 9 6 2.4175 5.4880 1.6505 10 6 2.8486 6.7959 0.9660 11 1 2.0196 7.4683 0.7450 12 6 3.9960 7.4883 1.6553 13 8 5.1242 7.3363 1.2506 14 8 3.7645 8.2739 2.7188 15 6 4.9170 8.9093 3.3321 16 6 5.6137 9.8034 2.3044 17 6 4.4594 9.7579 4.5202 18 6 5.8925 7.8357 3.8186 19 6 3.2794 5.9344 -0.2328 20 6 3.5780 0.6887 -0.0006 21 6 3.5521 -0.7094 -0.0003 22 6 2.2554 -1.1009 -0.0002 23 6 1.7708 -2.5279 -0.0005 24 8 0.5124 -2.6035 -0.6734 25 14 3.0109 -3.6048 -0.8798 26 1 -0.3634 -0.0821 -1.0244 27 1 -0.3634 -0.8460 0.5833 28 1 -0.3633 0.9282 0.4410 29 1 3.6572 3.3162 0.1308 30 1 1.4830 5.5728 2.2051 31 1 3.2119 5.0149 2.2278 32 1 4.9187 10.5682 1.9578 33 1 6.4785 10.2807 2.7650 34 1 5.9396 9.1985 1.4583 35 1 3.9634 9.1206 5.2522 36 1 5.3247 10.2345 4.9809 37 1 3.7643 10.5227 4.1740 38 1 6.2186 7.2308 2.9725 39 1 6.7580 8.3126 4.2787 40 1 5.3963 7.1987 4.5508 41 1 4.3094 5.5834 -0.1704 42 1 3.0414 6.3784 -1.1993 43 1 4.4583 1.3144 -0.0004 44 1 4.4132 -1.3612 -0.0003 45 1 1.6545 -2.8722 1.0271 46 1 0.5410 -2.3117 -1.5949 47 1 2.5449 -5.0148 -0.8864 48 1 3.2021 -3.1260 -2.2724 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12626394_10803936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:31:20 Heat of formation + Delta-G solvation = -75.550080 kcal Electronic energy + Delta-G solvation = -29476.056407 eV Core-core repulsion = 25306.722346 eV Total energy + Delta-G solvation = -4169.334061 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.62335 -42.14392 -40.72900 -39.26341 -37.89364 -37.69206 -35.16872 -34.79775 -33.64571 -31.39866 -28.41224 -28.34151 -28.18200 -27.48309 -26.84716 -26.48117 -23.76567 -22.77868 -21.46123 -21.27887 -20.58580 -20.17778 -18.89011 -18.60664 -18.15203 -17.63684 -17.12135 -17.03059 -16.92871 -16.32665 -16.11361 -15.99104 -15.54993 -15.36869 -15.16652 -14.85747 -14.65656 -14.64815 -14.38289 -14.24848 -13.79163 -13.69110 -13.60036 -13.40369 -13.28767 -13.12933 -12.97940 -12.96391 -12.89679 -12.61003 -12.45913 -12.42550 -12.40491 -12.03041 -11.97424 -11.73684 -11.41918 -11.22711 -10.96493 -10.85631 -10.20726 -9.75384 -9.10828 -4.87424 0.34153 1.13444 1.18119 1.48449 1.65950 1.72703 1.79144 2.03141 2.28897 2.36927 3.18993 3.23568 3.32158 3.56756 3.62063 3.63090 3.71682 3.75329 3.76577 3.91827 3.94714 3.98668 4.26740 4.35691 4.47247 4.49775 4.53695 4.54822 4.56900 4.57421 4.62838 4.66663 4.72823 4.76555 4.81191 4.84179 4.90773 4.91542 5.05220 5.09289 5.10085 5.18345 5.21898 5.25315 5.42347 5.54877 5.72592 5.98105 6.12556 6.31259 6.44486 6.78332 7.08033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.407 5.407 3 C -0.085 4.085 4 C 0.589 3.411 5 O -0.584 6.584 6 N -0.695 5.695 7 C 0.127 3.873 8 H 0.116 0.884 9 C -0.128 4.128 10 C -0.107 4.107 11 H 0.146 0.854 12 C 0.474 3.526 13 O -0.521 6.521 14 O -0.356 6.356 15 C 0.107 3.893 16 C -0.180 4.180 17 C -0.140 4.140 18 C -0.180 4.180 19 C -0.116 4.116 20 C -0.126 4.126 21 C -0.202 4.202 22 C 0.007 3.993 23 C -0.067 4.067 24 O -0.548 6.548 25 Si 0.815 3.185 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.417 0.583 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.173 0.827 44 H 0.184 0.816 45 H 0.133 0.867 46 H 0.385 0.615 47 H -0.297 1.297 48 H -0.292 1.292 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.166 0.389 2.051 4.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.081 5.081 3 C -0.198 4.198 4 C 0.378 3.622 5 O -0.466 6.466 6 N -0.346 5.346 7 C 0.022 3.978 8 H 0.134 0.866 9 C -0.167 4.167 10 C -0.127 4.127 11 H 0.164 0.836 12 C 0.318 3.682 13 O -0.410 6.410 14 O -0.274 6.274 15 C 0.071 3.929 16 C -0.237 4.237 17 C -0.197 4.197 18 C -0.237 4.237 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.226 4.226 22 C -0.110 4.110 23 C -0.174 4.174 24 O -0.355 6.355 25 Si 0.717 3.283 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.254 0.746 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.191 0.809 44 H 0.201 0.799 45 H 0.150 0.850 46 H 0.234 0.766 47 H -0.225 1.225 48 H -0.219 1.219 Dipole moment (debyes) X Y Z Total from point charges 3.224 -0.148 1.831 3.711 hybrid contribution -0.677 0.584 -0.677 1.122 sum 2.546 0.437 1.154 2.830 Atomic orbital electron populations 1.22226 0.75893 1.04676 1.03991 1.43907 1.07107 1.04648 1.52412 1.20214 0.91526 0.87250 1.20807 1.17231 0.85336 0.84351 0.75234 1.90773 1.17918 1.85324 1.52610 1.45484 1.10149 1.05406 1.73570 1.22447 0.99868 0.79066 0.96408 0.86635 1.23408 1.03192 0.92648 0.97436 1.22410 0.96343 0.96471 0.97426 0.83634 1.23690 0.90597 0.75931 0.77950 1.90579 1.25209 1.60739 1.64465 1.86571 1.40280 1.57674 1.42855 1.22439 0.83965 0.92858 0.93634 1.22457 1.01674 0.99719 0.99882 1.21884 1.03226 0.99286 0.95274 1.22457 0.99813 0.99192 1.02224 1.23311 1.00276 0.94041 0.97768 1.21724 0.94328 0.95915 1.03315 1.21012 0.95451 0.95534 1.10569 1.21491 0.91549 0.89282 1.08713 1.25242 0.93440 0.94116 1.04636 1.86571 1.30469 1.88634 1.29872 0.93325 0.82879 0.73337 0.78721 0.90484 0.88674 0.89832 0.74561 0.89200 0.89078 0.91830 0.89614 0.91638 0.91338 0.88732 0.91314 0.91547 0.89642 0.91828 0.87982 0.88402 0.80932 0.79912 0.84984 0.76620 1.22479 1.21896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 9.27 127.77 1.18 1.49 16 2 N -0.41 -1.91 3.16 -519.71 -1.64 -3.56 16 3 C -0.08 -0.38 6.88 40.35 0.28 -0.10 16 4 C 0.59 3.51 7.77 86.45 0.67 4.19 16 5 O -0.58 -7.37 14.22 -4.33 -0.06 -7.43 16 6 N -0.70 0.50 5.34 -443.98 -2.37 -1.87 16 7 C 0.13 -0.22 4.27 45.52 0.19 -0.03 16 8 H 0.12 0.08 7.42 -2.39 -0.02 0.07 16 9 C -0.13 0.33 7.43 31.12 0.23 0.56 16 10 C -0.11 0.29 4.26 -11.01 -0.05 0.24 16 11 H 0.15 -0.87 8.14 -2.39 -0.02 -0.89 16 12 C 0.47 1.32 6.79 71.24 0.48 1.80 16 13 O -0.52 -3.47 11.40 22.00 0.25 -3.22 16 14 O -0.36 -1.25 9.89 -51.44 -0.51 -1.76 16 15 C 0.11 0.15 1.13 -10.79 -0.01 0.14 16 16 C -0.18 -0.25 8.37 71.98 0.60 0.35 16 17 C -0.14 0.33 8.85 71.98 0.64 0.97 16 18 C -0.18 -0.20 8.37 71.98 0.60 0.40 16 19 C -0.12 0.43 7.16 31.12 0.22 0.66 16 20 C -0.13 0.11 10.36 22.57 0.23 0.34 16 21 C -0.20 0.41 9.37 22.01 0.21 0.62 16 22 C 0.01 0.01 6.14 41.34 0.25 0.26 16 23 C -0.07 0.13 2.90 71.24 0.21 0.33 16 24 O -0.55 -0.43 10.49 -148.98 -1.56 -1.99 16 25 Si 0.81 -3.29 31.10 68.60 2.13 -1.16 16 26 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.09 0.25 7.10 -2.39 -0.02 0.23 16 28 H 0.08 0.64 6.18 -2.39 -0.01 0.63 16 29 H 0.42 -2.30 7.63 -92.71 -0.71 -3.00 16 30 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.09 -0.19 8.09 -2.39 -0.02 -0.20 16 32 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.06 0.35 5.89 -2.39 -0.01 0.34 16 35 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.07 0.32 5.89 -2.38 -0.01 0.31 16 39 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 41 H 0.10 -0.29 7.41 -2.39 -0.02 -0.31 16 42 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.17 -1.25 7.45 -2.91 -0.02 -1.27 16 44 H 0.18 -1.63 6.85 -2.91 -0.02 -1.65 16 45 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 46 H 0.38 -1.26 8.70 -74.06 -0.64 -1.90 16 47 H -0.30 -0.90 7.11 99.48 0.71 -0.19 16 48 H -0.29 -0.53 7.11 99.48 0.71 0.18 16 Total: 0.00 -20.53 385.29 1.86 -18.67 By element: Atomic # 1 Polarization: -9.57 SS G_CDS: -0.33 Total: -9.90 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 5.95 Total: 12.22 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: -4.01 Total: -5.43 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -1.88 Total: -14.40 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 2.13 Total: -1.16 kcal Total: -20.53 1.86 -18.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12626394_10803936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.884 kcal (2) G-P(sol) polarization free energy of solvation -20.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds