Wall clock time and date at job start Sat Mar 6 2021 19:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47259 * 2 1 4 4 C 1.53000 * 109.46948 * 240.00085 * 2 1 3 5 5 O 1.45194 * 109.47332 * 119.99963 * 2 1 3 6 6 C 1.34231 * 116.99854 * 60.00100 * 5 2 1 7 7 O 1.20824 * 120.00391 * 359.97438 * 6 5 2 8 8 C 1.50705 * 119.99881 * 180.02562 * 6 5 2 9 9 H 1.08996 * 112.85271 * 48.79889 * 8 6 5 10 10 C 1.53778 * 113.61311 * 179.97438 * 8 6 5 11 11 C 1.53782 * 87.08102 * 139.97857 * 10 8 6 12 12 H 1.08999 * 113.61361 * 89.20528 * 11 10 8 13 13 N 1.46500 * 113.61084 * 220.01719 * 11 10 8 14 14 C 1.34779 * 119.99938 * 204.99683 * 13 11 10 15 15 O 1.21515 * 119.99964 * 0.02562 * 14 13 11 16 16 C 1.48166 * 120.00316 * 180.02562 * 14 13 11 17 17 N 1.32717 * 119.72219 * 0.02562 * 16 14 13 18 18 C 1.31524 * 121.64066 * 179.97438 * 17 16 14 19 19 C 1.38550 * 120.90721 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.32441 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47152 * 120.00522 * 20 19 18 22 22 Si 1.86293 * 109.47431 * 0.02562 * 20 19 18 23 23 C 1.38625 * 119.35386 * 0.25284 * 19 18 17 24 24 C 1.38598 * 118.48315 * 359.48525 * 23 19 18 25 25 C 1.53776 * 87.08263 * 334.56538 * 11 10 8 26 26 H 1.09004 * 109.46543 * 300.00016 * 1 2 3 27 27 H 1.08993 * 109.47150 * 59.99565 * 1 2 3 28 28 H 1.08996 * 109.47058 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47346 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46982 * 300.00487 * 3 2 1 31 31 H 1.08999 * 109.47639 * 60.00101 * 3 2 1 32 32 H 1.09003 * 109.46889 * 300.00126 * 4 2 1 33 33 H 1.09004 * 109.46951 * 59.99722 * 4 2 1 34 34 H 1.09002 * 109.47112 * 179.97438 * 4 2 1 35 35 H 1.09000 * 113.61781 * 25.42723 * 10 8 6 36 36 H 1.09003 * 113.69041 * 254.53907 * 10 8 6 37 37 H 0.96998 * 120.00399 * 25.00428 * 13 11 10 38 38 H 1.08008 * 119.54435 * 180.02562 * 18 17 16 39 39 H 1.09008 * 109.47393 * 239.99917 * 20 19 18 40 40 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 41 41 H 1.48506 * 109.99973 * 59.99460 * 22 20 19 42 42 H 1.48493 * 110.00375 * 181.31561 * 22 20 19 43 43 H 1.07997 * 120.76166 * 179.70210 * 23 19 18 44 44 H 1.08003 * 120.46517 * 180.23941 * 24 23 19 45 45 H 1.08990 * 113.61666 * 139.98028 * 25 11 10 46 46 H 1.09000 * 113.61500 * 270.88949 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6534 -1.9684 1.3378 7 8 0.9560 -2.5025 0.5082 8 6 2.1175 -2.7434 2.5441 9 1 1.9535 -2.2086 3.4796 10 6 1.6190 -4.1979 2.5709 11 6 3.0127 -4.5831 3.0945 12 1 3.0947 -4.5530 4.1810 13 7 3.5329 -5.8258 2.5190 14 6 4.4459 -6.5511 3.1949 15 8 4.8373 -6.1744 4.2819 16 6 4.9724 -7.8077 2.6127 17 7 4.5416 -8.2138 1.4249 18 6 4.9837 -9.3226 0.8727 19 6 5.9221 -10.1131 1.5162 20 6 6.4192 -11.3813 0.8716 21 8 7.8332 -11.2972 0.6830 22 14 5.5854 -11.6072 -0.7789 23 6 6.3949 -9.7291 2.7615 24 6 5.9155 -8.5531 3.3167 25 6 3.5376 -3.3156 2.3998 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6768 1.9564 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6765 -0.2074 -2.1392 34 1 3.1300 -0.7209 -1.2495 35 1 1.3967 -4.6016 1.5832 36 1 0.8186 -4.3734 3.2898 37 1 3.2203 -6.1267 1.6514 38 1 4.6101 -9.6209 -0.0958 39 1 6.1884 -12.2306 1.5149 40 1 8.2224 -12.0808 0.2711 41 1 5.8928 -10.4557 -1.6650 42 1 6.0434 -12.8706 -1.4107 43 1 7.1228 -10.3307 3.2855 44 1 6.2650 -8.2217 4.2834 45 1 4.2863 -2.7773 2.9809 46 1 3.8398 -3.4780 1.3651 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12626394_13287726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:33:23 Heat of formation + Delta-G solvation = -85.143118 kcal Electronic energy + Delta-G solvation = -28417.272772 eV Core-core repulsion = 24274.834204 eV Total energy + Delta-G solvation = -4142.438568 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.23679 -41.81984 -40.64304 -39.34275 -37.96749 -37.71541 -35.15974 -34.76855 -33.66429 -33.02004 -28.55849 -28.42678 -28.34558 -27.21915 -26.82872 -25.02525 -24.16917 -22.98177 -21.84057 -21.20398 -20.45209 -19.14908 -18.77745 -18.58564 -18.04901 -17.59851 -17.12763 -16.87629 -16.74922 -16.42253 -16.22510 -15.99196 -15.54486 -15.42852 -15.28137 -14.73650 -14.66805 -14.64360 -14.24115 -14.02095 -13.97224 -13.67024 -13.58981 -13.40739 -13.14451 -12.98083 -12.90665 -12.63762 -12.57286 -12.46352 -12.43098 -12.11981 -12.03522 -11.73859 -11.47207 -11.42786 -11.09168 -10.97319 -10.79666 -10.57468 -10.31954 -10.08356 -4.94179 -0.60694 0.07325 1.12690 1.22663 1.50825 1.59112 1.59317 1.94554 2.01815 2.61432 2.91874 3.23548 3.25328 3.32477 3.59411 3.62416 3.63729 3.69053 3.72767 3.75389 3.79166 3.90389 3.90945 3.97370 4.18766 4.38199 4.46798 4.53361 4.55489 4.56491 4.57961 4.62708 4.71467 4.75787 4.80211 4.83095 4.86371 4.89977 4.91557 4.98471 5.06111 5.08432 5.20501 5.24416 5.36130 5.41862 5.54075 6.24448 6.53478 6.59035 6.77778 6.99872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.356 6.356 6 C 0.473 3.527 7 O -0.522 6.522 8 C -0.105 4.105 9 H 0.150 0.850 10 C -0.117 4.117 11 C 0.122 3.878 12 H 0.123 0.877 13 N -0.691 5.691 14 C 0.573 3.427 15 O -0.561 6.561 16 C 0.060 3.940 17 N -0.460 5.460 18 C 0.099 3.901 19 C -0.104 4.104 20 C -0.081 4.081 21 O -0.557 6.557 22 Si 0.759 3.241 23 C -0.054 4.054 24 C -0.114 4.114 25 C -0.130 4.130 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.419 0.581 38 H 0.183 0.817 39 H 0.111 0.889 40 H 0.400 0.600 41 H -0.295 1.295 42 H -0.281 1.281 43 H 0.163 0.837 44 H 0.153 0.847 45 H 0.093 0.907 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 -2.784 -1.022 3.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.071 3.929 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.273 6.273 6 C 0.317 3.683 7 O -0.411 6.411 8 C -0.125 4.125 9 H 0.168 0.832 10 C -0.155 4.155 11 C 0.017 3.983 12 H 0.141 0.859 13 N -0.341 5.341 14 C 0.359 3.641 15 O -0.439 6.439 16 C -0.078 4.078 17 N -0.172 5.172 18 C -0.061 4.061 19 C -0.106 4.106 20 C -0.190 4.190 21 O -0.367 6.367 22 Si 0.664 3.336 23 C -0.080 4.080 24 C -0.135 4.135 25 C -0.168 4.168 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.256 0.744 38 H 0.199 0.801 39 H 0.129 0.871 40 H 0.252 0.748 41 H -0.222 1.222 42 H -0.207 1.207 43 H 0.181 0.819 44 H 0.171 0.829 45 H 0.112 0.888 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.922 -1.588 -1.522 2.921 hybrid contribution 1.671 -0.956 -0.188 1.935 sum -0.251 -2.544 -1.710 3.075 Atomic orbital electron populations 1.22456 0.93856 1.03681 1.03714 1.22436 0.94626 0.93236 0.82603 1.21883 1.02325 0.91329 1.04092 1.22462 1.01680 1.02167 0.97447 1.86568 1.69700 1.25380 1.45660 1.23734 0.76540 0.80521 0.87471 1.90584 1.36085 1.70333 1.44103 1.22428 0.98856 0.95064 0.96133 0.83187 1.23307 0.96752 0.91609 1.03784 1.22572 0.94102 0.81845 0.99790 0.85882 1.45783 1.41596 1.23564 1.23180 1.18054 0.79177 0.82816 0.84048 1.90783 1.60177 1.71236 1.21725 1.21126 0.97736 0.96281 0.92618 1.67509 1.24830 1.15217 1.09601 1.22918 0.94158 0.89255 0.99751 1.20794 0.97153 0.97247 0.95415 1.24897 0.85986 0.97036 1.11079 1.86529 1.19367 1.46828 1.84002 0.94216 0.89187 0.76968 0.73248 1.21750 0.97122 0.94938 0.94178 1.22306 0.95163 0.94457 1.01567 1.23398 0.94981 0.96073 1.02383 0.91682 0.89609 0.91696 0.91387 0.88732 0.91174 0.91689 0.89597 0.91949 0.88481 0.87982 0.74352 0.80051 0.87095 0.74844 1.22249 1.20723 0.81944 0.82918 0.88800 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.40 8.37 71.98 0.60 0.20 16 2 C 0.11 0.26 1.13 -10.79 -0.01 0.25 16 3 C -0.14 0.22 8.85 71.98 0.64 0.86 16 4 C -0.18 -0.47 8.37 71.98 0.60 0.14 16 5 O -0.36 -1.63 9.89 -51.42 -0.51 -2.14 16 6 C 0.47 1.96 6.79 71.24 0.48 2.45 16 7 O -0.52 -4.36 11.40 21.97 0.25 -4.11 16 8 C -0.11 0.16 4.26 -11.01 -0.05 0.12 16 9 H 0.15 -0.84 8.14 -2.39 -0.02 -0.86 16 10 C -0.12 0.25 7.16 31.12 0.22 0.48 16 11 C 0.12 -0.03 4.24 45.52 0.19 0.16 16 12 H 0.12 0.08 7.46 -2.39 -0.02 0.07 16 13 N -0.69 -1.58 5.34 -442.60 -2.37 -3.95 16 14 C 0.57 4.09 7.81 86.88 0.68 4.77 16 15 O -0.56 -7.03 15.92 -3.76 -0.06 -7.09 16 16 C 0.06 0.33 6.75 41.91 0.28 0.61 16 17 N -0.46 -1.72 9.54 -184.92 -1.76 -3.48 16 18 C 0.10 0.03 9.84 84.81 0.83 0.87 16 19 C -0.10 0.06 5.44 -19.70 -0.11 -0.05 16 20 C -0.08 0.39 2.82 71.24 0.20 0.59 16 21 O -0.56 1.03 12.76 -148.98 -1.90 -0.87 16 22 Si 0.76 -4.15 29.81 68.60 2.05 -2.10 16 23 C -0.05 -0.01 9.77 22.45 0.22 0.21 16 24 C -0.11 -0.39 9.63 22.61 0.22 -0.17 16 25 C -0.13 0.11 7.43 31.12 0.23 0.34 16 26 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 27 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.06 0.42 5.89 -2.39 -0.01 0.40 16 29 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.09 -0.44 8.14 -2.38 -0.02 -0.46 16 31 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.06 0.43 5.89 -2.39 -0.01 0.42 16 33 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 34 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.10 -0.01 7.41 -2.39 -0.02 -0.03 16 36 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 37 H 0.42 0.14 8.06 -92.71 -0.75 -0.61 16 38 H 0.18 -0.84 4.89 -2.91 -0.01 -0.86 16 39 H 0.11 -1.07 7.96 -2.38 -0.02 -1.09 16 40 H 0.40 -3.89 8.74 -74.06 -0.65 -4.54 16 41 H -0.30 -0.63 7.11 99.48 0.71 0.07 16 42 H -0.28 0.33 7.11 99.48 0.71 1.04 16 43 H 0.16 -0.59 8.06 -2.91 -0.02 -0.61 16 44 H 0.15 0.42 7.64 -2.91 -0.02 0.40 16 45 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.08 0.06 8.09 -2.39 -0.02 0.04 16 Total: 0.00 -19.97 379.06 0.60 -19.37 By element: Atomic # 1 Polarization: -7.12 SS G_CDS: -0.34 Total: -7.45 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 5.24 Total: 11.82 kcal Atomic # 7 Polarization: -3.30 SS G_CDS: -4.13 Total: -7.43 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -2.22 Total: -14.20 kcal Atomic # 14 Polarization: -4.15 SS G_CDS: 2.05 Total: -2.10 kcal Total: -19.97 0.60 -19.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12626394_13287726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.774 kcal (2) G-P(sol) polarization free energy of solvation -19.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds