Wall clock time and date at job start Sat Mar 6 2021 19:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33819 * 122.44967 * 2 1 4 4 C 1.50700 * 124.51889 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.47206 * 113.31867 * 4 3 2 6 6 Si 1.86305 * 109.46812 * 233.31445 * 4 3 2 7 7 S 1.70610 * 110.95502 * 179.73554 * 3 2 1 8 8 C 1.75828 * 91.56458 * 0.24824 * 7 3 2 9 9 C 1.46581 * 125.46112 * 180.02562 * 8 7 3 10 10 O 1.21704 * 119.99999 * 179.97438 * 9 8 7 11 11 N 1.34771 * 119.99776 * 359.97428 * 9 8 7 12 12 C 1.46509 * 119.99977 * 179.97438 * 11 9 8 13 13 H 1.08991 * 112.84788 * 23.80244 * 12 11 9 14 14 C 1.53782 * 113.61403 * 155.00201 * 12 11 9 15 15 C 1.53781 * 87.08148 * 139.97969 * 14 12 11 16 16 H 1.09003 * 113.60985 * 89.11504 * 15 14 12 17 17 C 1.50701 * 113.61340 * 219.93312 * 15 14 12 18 18 O 1.20820 * 120.00351 * 359.97438 * 17 15 14 19 19 O 1.34232 * 119.99420 * 180.02562 * 17 15 14 20 20 C 1.45204 * 116.99537 * 179.97438 * 19 17 15 21 21 C 1.53005 * 109.46841 * 59.99874 * 20 19 17 22 22 C 1.52998 * 109.47097 * 179.97438 * 20 19 17 23 23 C 1.53000 * 109.47243 * 299.99959 * 20 19 17 24 24 C 1.53780 * 113.61348 * 252.49872 * 12 11 9 25 25 C 1.36647 * 109.08433 * 359.97438 * 8 7 3 26 26 H 1.09004 * 109.47196 * 84.89037 * 1 2 3 27 27 H 1.08999 * 109.46880 * 204.88837 * 1 2 3 28 28 H 1.09007 * 109.46985 * 324.89005 * 1 2 3 29 29 H 1.08997 * 109.47324 * 353.31492 * 4 3 2 30 30 H 0.96705 * 113.99873 * 59.99574 * 5 4 3 31 31 H 1.48497 * 109.99915 * 179.97438 * 6 4 3 32 32 H 1.48498 * 110.00100 * 301.32254 * 6 4 3 33 33 H 0.96996 * 120.00696 * 359.97438 * 11 9 8 34 34 H 1.09001 * 113.61295 * 254.53028 * 14 12 11 35 35 H 1.08997 * 113.61781 * 25.42901 * 14 12 11 36 36 H 1.08997 * 109.47124 * 60.00185 * 21 20 19 37 37 H 1.09007 * 109.47126 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47401 * 299.99934 * 21 20 19 39 39 H 1.09001 * 109.47022 * 60.00111 * 22 20 19 40 40 H 1.08997 * 109.47067 * 180.02562 * 22 20 19 41 41 H 1.09006 * 109.47217 * 300.00032 * 22 20 19 42 42 H 1.08999 * 109.47045 * 60.00038 * 23 20 19 43 43 H 1.08997 * 109.47086 * 179.97438 * 23 20 19 44 44 H 1.09001 * 109.47082 * 300.00015 * 23 20 19 45 45 H 1.09002 * 113.61799 * 334.56176 * 24 12 11 46 46 H 1.09001 * 113.61819 * 105.47003 * 24 12 11 47 47 H 1.08002 * 123.35678 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6354 2.5161 0.0006 5 8 1.9403 3.1629 1.2378 6 14 2.3577 3.4985 -1.4081 7 16 3.8969 0.7893 0.0074 8 6 3.5937 -0.9427 0.0028 9 6 4.6231 -1.9862 0.0064 10 8 4.3001 -3.1596 0.0032 11 7 5.9272 -1.6462 0.0133 12 6 6.9561 -2.6892 0.0174 13 1 6.6012 -3.6355 -0.3906 14 6 8.3008 -2.2303 -0.5709 15 6 8.9769 -3.0287 0.5563 16 1 9.1750 -4.0686 0.2965 17 6 10.1751 -2.3356 1.1520 18 8 10.5175 -1.2549 0.7344 19 8 10.8627 -2.9197 2.1460 20 6 12.0060 -2.1948 2.6712 21 6 11.5432 -0.8469 3.2280 22 6 12.6577 -3.0111 3.7891 23 6 13.0212 -1.9623 1.5504 24 6 7.6837 -2.8314 1.3647 25 6 2.2447 -1.1601 -0.0034 26 1 -0.3634 0.0915 -1.0236 27 1 -0.3633 -0.9322 0.4325 28 1 -0.3633 0.8407 0.5911 29 1 0.5540 2.4512 -0.1187 30 1 2.8874 3.2553 1.4104 31 1 1.7839 4.8680 -1.4190 32 1 3.8351 3.5672 -1.2744 33 1 6.1847 -0.7111 0.0154 34 1 8.4997 -2.6266 -1.5666 35 1 8.4632 -1.1547 -0.5022 36 1 10.8200 -1.0125 4.0264 37 1 12.4014 -0.3028 3.6227 38 1 11.0786 -0.2651 2.4319 39 1 12.9873 -3.9716 3.3928 40 1 13.5157 -2.4668 4.1836 41 1 11.9343 -3.1764 4.5875 42 1 12.5566 -1.3805 0.7543 43 1 13.8792 -1.4177 1.9446 44 1 13.3508 -2.9225 1.1537 45 1 7.6774 -1.9201 1.9627 46 1 7.3844 -3.7129 1.9317 47 1 1.8019 -2.1452 -0.0067 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12626394_6739946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:36:17 Heat of formation + Delta-G solvation = -97.313903 kcal Electronic energy + Delta-G solvation = -28952.115188 eV Core-core repulsion = 24808.189394 eV Total energy + Delta-G solvation = -4143.925794 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.22420 -41.15569 -40.00146 -39.27389 -37.81601 -37.62879 -35.16520 -34.66168 -32.44085 -29.83359 -28.44217 -28.36865 -28.29724 -26.88339 -26.44720 -24.52470 -23.15135 -21.91605 -21.24632 -20.48184 -20.20519 -19.37435 -18.71914 -17.87626 -17.65920 -17.39967 -17.11973 -16.90243 -16.42425 -16.13412 -15.96997 -15.83173 -15.45030 -15.31563 -14.85173 -14.72612 -14.66286 -14.36518 -14.05310 -13.74238 -13.64698 -13.46131 -13.42851 -13.18867 -13.15844 -13.02303 -12.99707 -12.92141 -12.66479 -12.51662 -12.47073 -12.44408 -12.29220 -12.06015 -11.80333 -11.76571 -11.44699 -11.31067 -10.98039 -10.95783 -10.31066 -9.74005 -9.46098 -5.00975 -0.71318 0.26082 0.67547 1.07316 1.10796 1.24968 1.51020 1.56790 1.87083 2.01233 2.02173 3.19694 3.24558 3.28213 3.49793 3.58374 3.58865 3.67747 3.70278 3.73851 3.89095 3.95422 4.08492 4.22796 4.43615 4.44962 4.51195 4.52709 4.53210 4.54212 4.58411 4.70074 4.73375 4.77259 4.79877 4.81709 4.86928 4.87284 4.88829 5.00119 5.01350 5.06928 5.18909 5.22770 5.30239 5.35305 5.41031 5.52006 6.24901 6.29175 6.75297 6.93364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.099 4.099 3 C -0.229 4.229 4 C -0.049 4.049 5 O -0.540 6.540 6 Si 0.740 3.260 7 S 0.216 5.784 8 C -0.279 4.279 9 C 0.594 3.406 10 O -0.563 6.563 11 N -0.707 5.707 12 C 0.125 3.875 13 H 0.123 0.877 14 C -0.118 4.118 15 C -0.106 4.106 16 H 0.149 0.851 17 C 0.474 3.526 18 O -0.522 6.522 19 O -0.356 6.356 20 C 0.107 3.893 21 C -0.180 4.180 22 C -0.140 4.140 23 C -0.180 4.180 24 C -0.130 4.130 25 C -0.050 4.050 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.384 0.616 31 H -0.279 1.279 32 H -0.260 1.260 33 H 0.408 0.592 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.922 0.833 -1.322 1.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.112 4.112 3 C -0.349 4.349 4 C -0.159 4.159 5 O -0.348 6.348 6 Si 0.641 3.359 7 S 0.485 5.515 8 C -0.399 4.399 9 C 0.381 3.619 10 O -0.443 6.443 11 N -0.357 5.357 12 C 0.020 3.980 13 H 0.140 0.860 14 C -0.156 4.156 15 C -0.126 4.126 16 H 0.167 0.833 17 C 0.318 3.682 18 O -0.411 6.411 19 O -0.273 6.273 20 C 0.071 3.929 21 C -0.237 4.237 22 C -0.197 4.197 23 C -0.237 4.237 24 C -0.169 4.169 25 C -0.084 4.084 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.159 0.841 30 H 0.233 0.767 31 H -0.205 1.205 32 H -0.185 1.185 33 H 0.245 0.755 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.025 1.966 -1.595 3.242 hybrid contribution -0.424 -0.309 1.165 1.278 sum 1.601 1.657 -0.430 2.344 Atomic orbital electron populations 1.20692 0.87660 1.03693 1.04018 1.18842 0.99176 0.90269 1.02882 1.24542 0.98639 1.01070 1.10647 1.24797 1.06600 0.89492 0.95056 1.86653 1.30517 1.79815 1.37802 0.93891 0.78823 0.78960 0.84206 1.82774 1.03202 0.97054 1.68449 1.24473 0.97969 0.97530 1.19962 1.17147 0.82362 0.87127 0.75262 1.90832 1.82218 1.19615 1.51664 1.45778 1.04691 1.10671 1.74571 1.22533 0.85808 0.92828 0.96829 0.85955 1.23328 0.91798 1.01734 0.98703 1.22421 0.89055 1.02792 0.98297 0.83293 1.23711 0.83534 0.84076 0.76892 1.90581 1.67714 1.22353 1.60468 1.86572 1.41518 1.50463 1.48739 1.22438 0.83519 0.92321 0.94599 1.22462 1.03189 0.96357 1.01731 1.21885 1.01061 1.00500 0.96217 1.22458 0.99342 1.02989 0.98946 1.23414 0.92040 1.04080 0.97348 1.20845 0.91052 1.00511 0.96013 0.88848 0.90768 0.90726 0.84051 0.76700 1.20544 1.18537 0.75534 0.87960 0.88359 0.91873 0.89626 0.91647 0.91210 0.88740 0.91348 0.91678 0.89626 0.91710 0.89412 0.88843 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.42 9.48 71.24 0.68 1.09 16 2 C -0.10 0.01 5.78 -21.05 -0.12 -0.11 16 3 C -0.23 0.25 4.82 24.68 0.12 0.36 16 4 C -0.05 0.12 2.77 71.24 0.20 0.32 16 5 O -0.54 -0.40 12.88 -148.98 -1.92 -2.31 16 6 Si 0.74 -2.64 32.14 68.60 2.21 -0.44 16 7 S 0.22 -0.35 20.84 -56.49 -1.18 -1.53 16 8 C -0.28 -0.86 6.45 24.08 0.16 -0.70 16 9 C 0.59 3.38 7.78 86.42 0.67 4.05 16 10 O -0.56 -7.18 16.44 -4.36 -0.07 -7.26 16 11 N -0.71 -0.05 5.35 -444.09 -2.38 -2.42 16 12 C 0.12 -0.19 4.24 45.52 0.19 0.00 16 13 H 0.12 0.00 7.46 -2.39 -0.02 -0.02 16 14 C -0.12 0.42 7.16 31.12 0.22 0.64 16 15 C -0.11 0.28 4.26 -11.01 -0.05 0.23 16 16 H 0.15 -0.94 8.14 -2.39 -0.02 -0.96 16 17 C 0.47 1.45 6.80 71.24 0.48 1.93 16 18 O -0.52 -3.70 11.40 21.98 0.25 -3.45 16 19 O -0.36 -1.31 9.89 -51.43 -0.51 -1.82 16 20 C 0.11 0.18 1.13 -10.79 -0.01 0.16 16 21 C -0.18 -0.28 8.37 71.98 0.60 0.32 16 22 C -0.14 0.31 8.85 71.98 0.64 0.95 16 23 C -0.18 -0.28 8.37 71.98 0.60 0.32 16 24 C -0.13 0.28 7.43 31.12 0.23 0.52 16 25 C -0.05 -0.14 9.78 21.72 0.21 0.07 16 26 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H 0.07 -0.31 8.10 -2.39 -0.02 -0.33 16 28 H 0.07 -0.32 6.99 -2.38 -0.02 -0.34 16 29 H 0.14 -0.68 6.25 -2.39 -0.01 -0.69 16 30 H 0.38 -1.77 8.70 -74.05 -0.64 -2.41 16 31 H -0.28 -0.83 7.11 99.48 0.71 -0.12 16 32 H -0.26 0.22 7.11 99.48 0.71 0.93 16 33 H 0.41 -1.44 7.84 -92.71 -0.73 -2.16 16 34 H 0.10 -0.58 8.14 -2.39 -0.02 -0.59 16 35 H 0.10 -0.21 7.41 -2.39 -0.02 -0.22 16 36 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.08 -0.11 8.14 -2.38 -0.02 -0.13 16 38 H 0.06 0.36 5.89 -2.39 -0.01 0.34 16 39 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 42 H 0.06 0.37 5.89 -2.39 -0.01 0.35 16 43 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.09 -0.11 8.10 -2.39 -0.02 -0.13 16 46 H 0.09 -0.23 8.14 -2.39 -0.02 -0.24 16 47 H 0.15 0.43 8.06 -2.91 -0.02 0.41 16 Total: 0.00 -17.87 396.88 0.90 -16.97 By element: Atomic # 1 Polarization: -7.56 SS G_CDS: -0.33 Total: -7.89 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 4.82 Total: 10.15 kcal Atomic # 7 Polarization: -0.05 SS G_CDS: -2.38 Total: -2.42 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -2.25 Total: -14.84 kcal Atomic # 14 Polarization: -2.64 SS G_CDS: 2.21 Total: -0.44 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.18 Total: -1.53 kcal Total: -17.87 0.90 -16.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12626394_6739946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.342 kcal (2) G-P(sol) polarization free energy of solvation -17.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds