Wall clock time and date at job start Sat Mar 6 2021 17:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86293 * 109.47078 * 2 1 4 4 C 1.50700 * 109.47015 * 120.00090 * 2 1 3 5 5 C 1.38403 * 119.82957 * 64.99901 * 4 2 1 6 6 C 1.37886 * 120.17038 * 180.02562 * 5 4 2 7 7 C 1.39835 * 119.83117 * 359.97438 * 6 5 4 8 8 C 1.47205 * 120.17429 * 179.97438 * 7 6 5 9 9 C 1.34802 * 120.00006 * 179.97438 * 8 7 6 10 10 C 1.46429 * 119.99991 * 179.97438 * 9 8 7 11 11 O 1.21702 * 119.99759 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00266 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00367 * 180.02562 * 12 10 9 14 14 H 1.09005 * 112.84830 * 336.19762 * 13 12 10 15 15 C 1.53952 * 113.61620 * 107.46686 * 13 12 10 16 16 C 1.53775 * 87.02191 * 89.20369 * 15 13 12 17 17 H 1.09004 * 113.61278 * 270.77321 * 16 15 13 18 18 C 1.50696 * 113.61945 * 139.95547 * 16 15 13 19 19 O 1.20825 * 119.99852 * 260.86572 * 18 16 15 20 20 O 1.34227 * 120.00240 * 80.85997 * 18 16 15 21 21 C 1.45202 * 116.99825 * 180.02562 * 20 18 16 22 22 C 1.50706 * 109.47018 * 180.02562 * 21 20 18 23 23 C 1.38228 * 119.99981 * 270.21717 * 22 21 20 24 24 C 1.38238 * 120.00110 * 180.21342 * 23 22 21 25 25 C 1.38234 * 119.99675 * 359.52133 * 24 23 22 26 26 C 1.38235 * 120.00220 * 0.28720 * 25 24 23 27 27 C 1.38234 * 119.99892 * 89.99498 * 22 21 20 28 28 C 1.53778 * 113.61768 * 205.00302 * 13 12 10 29 29 C 1.39837 * 119.65775 * 0.25395 * 7 6 5 30 30 C 1.37900 * 119.82354 * 359.46787 * 29 7 6 31 31 H 0.96701 * 113.99999 * 300.00194 * 1 2 3 32 32 H 1.08996 * 109.47037 * 240.00005 * 2 1 3 33 33 H 1.48501 * 110.00215 * 299.99853 * 3 2 1 34 34 H 1.48507 * 110.00293 * 61.32020 * 3 2 1 35 35 H 1.07999 * 119.91134 * 359.97438 * 5 4 2 36 36 H 1.08010 * 120.08583 * 180.02562 * 6 5 4 37 37 H 1.07999 * 119.99562 * 0.02562 * 8 7 6 38 38 H 1.07999 * 120.00432 * 0.02562 * 9 8 7 39 39 H 0.97001 * 120.00113 * 0.02562 * 12 10 9 40 40 H 1.09004 * 113.66817 * 334.67014 * 15 13 12 41 41 H 1.09001 * 113.61588 * 203.72042 * 15 13 12 42 42 H 1.08998 * 109.47296 * 60.00433 * 21 20 18 43 43 H 1.09001 * 109.47117 * 299.99441 * 21 20 18 44 44 H 1.08004 * 120.00281 * 0.02562 * 23 22 21 45 45 H 1.08002 * 120.00519 * 179.80752 * 24 23 22 46 46 H 1.07999 * 120.00009 * 180.25939 * 25 24 23 47 47 H 1.07996 * 120.00471 * 179.97438 * 26 25 24 48 48 H 1.08001 * 120.00324 * 0.02562 * 27 22 21 49 49 H 1.09003 * 113.61890 * 156.24946 * 28 13 12 50 50 H 1.08999 * 113.61439 * 25.34292 * 28 13 12 51 51 H 1.08001 * 120.09221 * 179.75235 * 29 7 6 52 52 H 1.08001 * 119.91068 * 180.27287 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6824 -2.0619 1.3950 6 6 2.1383 -2.7188 2.5183 7 6 2.8542 -2.0162 3.4925 8 6 3.3440 -2.7098 4.6950 9 6 4.0342 -2.0291 5.6316 10 6 4.5209 -2.7190 6.8280 11 8 4.3025 -3.9070 6.9765 12 7 5.2106 -2.0384 7.7648 13 6 5.6979 -2.7287 8.9615 14 1 5.1257 -3.6267 9.1946 15 6 7.2218 -2.9475 8.9697 16 6 7.3345 -1.5744 9.6527 17 1 7.4210 -0.7439 8.9519 18 6 8.3701 -1.5273 10.7464 19 8 8.0335 -1.6330 11.9020 20 8 9.6665 -1.3680 10.4369 21 6 10.6083 -1.3323 11.5414 22 6 12.0046 -1.1480 11.0052 23 6 12.7726 -2.2513 10.6832 24 6 14.0550 -2.0823 10.1955 25 6 14.5657 -0.8097 10.0204 26 6 13.7963 0.2937 10.3387 27 6 12.5157 0.1246 10.8310 28 6 5.9033 -1.7985 10.1686 29 6 3.0976 -0.6498 3.3213 30 6 2.6401 -0.0082 2.1896 31 1 -0.3933 0.4417 0.7650 32 1 1.7924 -0.5138 -0.8900 33 1 1.5616 2.4679 -1.2085 34 1 1.5879 2.4586 1.2243 35 1 1.1290 -2.6031 0.6419 36 1 1.9436 -3.7736 2.6451 37 1 3.1509 -3.7643 4.8263 38 1 4.2277 -0.9748 5.5001 39 1 5.3843 -1.0914 7.6466 40 1 7.6649 -2.9777 7.9742 41 1 7.5405 -3.7767 9.6013 42 1 10.5527 -2.2686 12.0968 43 1 10.3611 -0.5021 12.2031 44 1 12.3719 -3.2454 10.8155 45 1 14.6562 -2.9443 9.9468 46 1 15.5661 -0.6776 9.6355 47 1 14.1954 1.2879 10.2024 48 1 11.9145 0.9867 11.0796 49 1 5.8608 -2.3130 11.1286 50 1 5.2834 -0.9024 10.1397 51 1 3.6463 -0.0994 4.0712 52 1 2.8311 1.0461 2.0539 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12636046_12360594.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:52:03 Heat of formation + Delta-G solvation = -47.636659 kcal Electronic energy + Delta-G solvation = -33421.292874 eV Core-core repulsion = 28704.775917 eV Total energy + Delta-G solvation = -4716.516957 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.166 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.08862 -41.04572 -40.56170 -40.11837 -39.12962 -37.89006 -37.48133 -35.07299 -34.35334 -33.18964 -32.17858 -31.87607 -31.25051 -28.70719 -27.38255 -26.84307 -26.57859 -24.34130 -23.88894 -23.57147 -22.73364 -22.22470 -22.06753 -20.64751 -20.24362 -19.13088 -18.75424 -18.31520 -18.03619 -17.59661 -17.32184 -17.26018 -16.78519 -16.54955 -16.20783 -16.11039 -16.09880 -15.91969 -15.79569 -15.31128 -15.09239 -14.89614 -14.61920 -14.49877 -14.37606 -14.14474 -14.11660 -13.92126 -13.82885 -13.67814 -13.45330 -13.36772 -13.24930 -13.05140 -12.92016 -12.26676 -12.15380 -12.11330 -12.07054 -11.84868 -11.76746 -11.71714 -11.58012 -11.40363 -11.32818 -11.09719 -10.60426 -10.17119 -9.95958 -9.90178 -9.86830 -9.23483 -4.91040 -0.53436 0.15529 0.41728 0.42382 0.89789 1.06100 1.31633 1.60222 1.70617 1.97615 2.09226 2.22778 2.82564 2.84263 3.22356 3.32945 3.41104 3.53033 3.56694 3.67679 3.71423 3.75013 3.78641 3.82489 3.96675 4.00792 4.09781 4.17783 4.18209 4.23010 4.23857 4.32483 4.37899 4.46641 4.50470 4.55334 4.59371 4.63726 4.66147 4.70863 4.81674 4.86920 4.89185 4.96784 4.98255 5.02194 5.07563 5.12000 5.18871 5.31418 5.40163 5.48420 5.49381 5.52127 5.52825 5.55579 5.62315 5.92184 6.00569 6.47500 6.53360 6.63482 7.21503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.088 4.088 3 Si 0.772 3.228 4 C -0.109 4.109 5 C -0.107 4.107 6 C -0.103 4.103 7 C -0.080 4.080 8 C -0.021 4.021 9 C -0.206 4.206 10 C 0.546 3.454 11 O -0.590 6.590 12 N -0.693 5.693 13 C 0.122 3.878 14 H 0.093 0.907 15 C -0.129 4.129 16 C -0.103 4.103 17 H 0.154 0.846 18 C 0.471 3.529 19 O -0.536 6.536 20 O -0.353 6.353 21 C 0.108 3.892 22 C -0.113 4.113 23 C -0.109 4.109 24 C -0.131 4.131 25 C -0.116 4.116 26 C -0.130 4.130 27 C -0.106 4.106 28 C -0.116 4.116 29 C -0.094 4.094 30 C -0.124 4.124 31 H 0.386 0.614 32 H 0.123 0.877 33 H -0.308 1.308 34 H -0.277 1.277 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.167 0.833 39 H 0.421 0.579 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.131 0.869 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.134 0.866 49 H 0.098 0.902 50 H 0.104 0.896 51 H 0.159 0.841 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.687 5.411 -2.006 7.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.197 4.197 3 Si 0.677 3.323 4 C -0.110 4.110 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.080 4.080 8 C -0.041 4.041 9 C -0.227 4.227 10 C 0.337 3.663 11 O -0.472 6.472 12 N -0.345 5.345 13 C 0.016 3.984 14 H 0.111 0.889 15 C -0.168 4.168 16 C -0.121 4.121 17 H 0.172 0.828 18 C 0.315 3.685 19 O -0.425 6.425 20 O -0.270 6.270 21 C 0.035 3.965 22 C -0.113 4.113 23 C -0.127 4.127 24 C -0.149 4.149 25 C -0.134 4.134 26 C -0.148 4.148 27 C -0.124 4.124 28 C -0.154 4.154 29 C -0.111 4.111 30 C -0.141 4.141 31 H 0.235 0.765 32 H 0.141 0.859 33 H -0.236 1.236 34 H -0.204 1.204 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.184 0.816 39 H 0.259 0.741 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.149 0.851 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.161 0.839 48 H 0.152 0.848 49 H 0.116 0.884 50 H 0.122 0.878 51 H 0.177 0.823 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.366 5.076 -2.054 7.004 hybrid contribution -1.052 -0.176 0.763 1.312 sum 3.314 4.900 -1.291 6.055 Atomic orbital electron populations 1.86587 1.18586 1.80424 1.50190 1.25323 0.83423 1.12183 0.98772 0.94029 0.90179 0.71730 0.76364 1.20525 0.98849 0.94782 0.96818 1.21081 0.99329 0.94216 0.97920 1.21613 0.96510 1.00683 0.93329 1.19121 1.00035 0.94297 0.94597 1.22362 0.91326 0.99568 0.90822 1.22990 1.03490 1.02242 0.93933 1.18757 0.77228 0.86283 0.84021 1.90833 1.59418 1.17570 1.79346 1.45402 1.55366 1.13845 1.19843 1.21712 0.94518 0.96903 0.85291 0.88889 1.23388 0.96441 0.94906 1.02036 1.22802 0.91275 1.02522 0.95536 0.82823 1.24141 0.82799 0.71115 0.90435 1.90679 1.81886 1.46746 1.23222 1.86600 1.17592 1.82607 1.40186 1.21872 0.84344 1.03377 0.86942 1.19576 0.94018 0.94488 1.03224 1.21305 0.94806 0.98727 0.97819 1.21474 0.95604 0.98475 0.99368 1.21608 1.00874 0.92581 0.98297 1.21487 0.94154 1.00221 0.98927 1.21317 0.96397 0.96595 0.98125 1.23284 0.92884 1.01240 0.98022 1.21665 0.98472 0.93120 0.97874 1.21221 0.98353 1.00644 0.93868 0.76460 0.85912 1.23636 1.20352 0.85390 0.84669 0.86064 0.81555 0.74080 0.89029 0.89066 0.90344 0.90004 0.85123 0.84074 0.83904 0.83854 0.84763 0.88367 0.87752 0.82328 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.88 12.83 -148.98 -1.91 -2.79 16 2 C -0.09 0.19 2.80 71.24 0.20 0.39 16 3 Si 0.77 -3.10 29.87 68.60 2.05 -1.05 16 4 C -0.11 0.22 5.36 -19.79 -0.11 0.11 16 5 C -0.11 0.03 9.66 22.23 0.21 0.25 16 6 C -0.10 0.06 9.80 22.57 0.22 0.28 16 7 C -0.08 0.13 5.87 -20.15 -0.12 0.02 16 8 C -0.02 0.02 9.46 23.84 0.23 0.24 16 9 C -0.21 0.75 9.41 23.62 0.22 0.98 16 10 C 0.55 0.89 7.74 86.38 0.67 1.56 16 11 O -0.59 -6.84 15.83 -4.36 -0.07 -6.91 16 12 N -0.69 3.33 5.26 -443.98 -2.34 1.00 16 13 C 0.12 -0.29 4.33 45.58 0.20 -0.09 16 14 H 0.09 0.24 7.46 -2.38 -0.02 0.22 16 15 C -0.13 0.39 7.44 31.18 0.23 0.62 16 16 C -0.10 0.44 4.13 -11.02 -0.05 0.40 16 17 H 0.15 -1.54 8.14 -2.39 -0.02 -1.56 16 18 C 0.47 1.31 7.48 71.23 0.53 1.84 16 19 O -0.54 -4.77 15.66 21.97 0.34 -4.43 16 20 O -0.35 -1.16 10.20 -51.39 -0.52 -1.69 16 21 C 0.11 0.27 5.59 71.24 0.40 0.66 16 22 C -0.11 -0.26 5.52 -19.87 -0.11 -0.37 16 23 C -0.11 -0.16 9.70 22.27 0.22 0.05 16 24 C -0.13 0.01 10.05 22.27 0.22 0.24 16 25 C -0.12 0.10 10.05 22.27 0.22 0.33 16 26 C -0.13 0.09 10.05 22.27 0.22 0.31 16 27 C -0.11 -0.08 9.70 22.27 0.22 0.13 16 28 C -0.12 0.50 7.14 31.12 0.22 0.72 16 29 C -0.09 0.48 9.41 22.58 0.21 0.69 16 30 C -0.12 0.57 8.65 22.23 0.19 0.77 16 31 H 0.39 -1.57 8.70 -74.06 -0.64 -2.22 16 32 H 0.12 -0.40 7.96 -2.39 -0.02 -0.41 16 33 H -0.31 -1.41 7.11 99.48 0.71 -0.70 16 34 H -0.28 0.33 7.00 99.48 0.70 1.03 16 35 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 36 H 0.14 -0.32 8.06 -2.91 -0.02 -0.35 16 37 H 0.12 0.29 7.52 -2.91 -0.02 0.26 16 38 H 0.17 -1.92 6.07 -2.91 -0.02 -1.94 16 39 H 0.42 -5.08 8.68 -92.71 -0.81 -5.89 16 40 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.09 -0.12 8.09 -2.39 -0.02 -0.14 16 42 H 0.08 0.19 8.08 -2.39 -0.02 0.17 16 43 H 0.08 0.15 8.08 -2.39 -0.02 0.13 16 44 H 0.13 -0.11 8.06 -2.91 -0.02 -0.14 16 45 H 0.14 -0.55 8.06 -2.91 -0.02 -0.58 16 46 H 0.14 -0.72 8.06 -2.91 -0.02 -0.75 16 47 H 0.14 -0.69 8.06 -2.91 -0.02 -0.72 16 48 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 49 H 0.10 -0.06 7.45 -2.39 -0.02 -0.08 16 50 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 51 H 0.16 -1.79 6.17 -2.91 -0.02 -1.81 16 52 H 0.15 -1.27 4.81 -2.91 -0.01 -1.29 16 Total: 0.00 -25.65 443.02 1.56 -24.09 By element: Atomic # 1 Polarization: -17.89 SS G_CDS: -0.45 Total: -18.34 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 4.46 Total: 10.12 kcal Atomic # 7 Polarization: 3.33 SS G_CDS: -2.34 Total: 1.00 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -2.16 Total: -15.82 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: 2.05 Total: -1.05 kcal Total: -25.65 1.56 -24.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12636046_12360594.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.550 kcal (2) G-P(sol) polarization free energy of solvation -25.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds