Wall clock time and date at job start Sat Mar 6 2021 17:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47264 * 2 1 4 4 C 1.50696 * 109.46923 * 240.00065 * 2 1 3 5 5 C 1.34854 * 125.89121 * 120.32651 * 4 2 1 6 6 C 1.40890 * 107.41722 * 180.15763 * 5 4 2 7 7 C 1.34856 * 107.41764 * 359.55980 * 6 5 4 8 8 C 1.50694 * 125.88896 * 180.23979 * 7 6 5 9 9 C 1.50704 * 109.46972 * 85.03378 * 8 7 6 10 10 O 1.21285 * 119.99804 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00261 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99931 * 179.97438 * 11 9 8 13 13 H 1.08990 * 112.85086 * 23.80520 * 12 11 9 14 14 C 1.53784 * 113.61338 * 155.00352 * 12 11 9 15 15 C 1.53774 * 87.08078 * 89.11394 * 14 12 11 16 16 H 1.09004 * 113.61474 * 270.88186 * 15 14 12 17 17 C 1.50704 * 113.61389 * 140.06848 * 15 14 12 18 18 O 1.20828 * 119.99738 * 359.97438 * 17 15 14 19 19 O 1.34225 * 120.00085 * 180.02562 * 17 15 14 20 20 C 1.45205 * 116.99936 * 179.97438 * 19 17 15 21 21 C 1.50697 * 109.47113 * 179.97438 * 20 19 17 22 22 C 1.38243 * 120.00049 * 269.72756 * 21 20 19 23 23 C 1.38236 * 119.99736 * 179.74761 * 22 21 20 24 24 C 1.38234 * 120.00008 * 0.54016 * 23 22 21 25 25 C 1.38230 * 120.00141 * 359.71309 * 24 23 22 26 26 C 1.38236 * 120.00287 * 0.02562 * 25 24 23 27 27 C 1.53779 * 87.08366 * 25.43170 * 15 14 12 28 28 N 1.36337 * 108.21648 * 0.27154 * 7 6 5 29 29 H 0.96697 * 114.00097 * 59.99777 * 1 2 3 30 30 H 1.08996 * 109.46968 * 120.00121 * 2 1 3 31 31 H 1.48504 * 109.99697 * 59.99939 * 3 2 1 32 32 H 1.48491 * 109.99961 * 181.32095 * 3 2 1 33 33 H 1.07999 * 126.28920 * 0.02562 * 5 4 2 34 34 H 1.08002 * 126.29400 * 179.83402 * 6 5 4 35 35 H 1.09001 * 109.46944 * 205.02501 * 8 7 6 36 36 H 1.08993 * 109.48079 * 325.03338 * 8 7 6 37 37 H 0.96996 * 119.99936 * 0.02562 * 11 9 8 38 38 H 1.08993 * 113.61144 * 203.66831 * 14 12 11 39 39 H 1.09004 * 113.61309 * 334.48247 * 14 12 11 40 40 H 1.08994 * 109.46940 * 299.99434 * 20 19 17 41 41 H 1.09001 * 109.46925 * 59.99805 * 20 19 17 42 42 H 1.07992 * 119.99732 * 0.02562 * 22 21 20 43 43 H 1.07999 * 119.99678 * 180.27223 * 23 22 21 44 44 H 1.07997 * 119.99931 * 179.72614 * 24 23 22 45 45 H 1.08001 * 120.00081 * 179.97438 * 25 24 23 46 46 H 1.07993 * 120.00334 * 179.97438 * 26 25 24 47 47 H 1.08996 * 113.61394 * 220.01941 * 27 15 14 48 48 H 1.09000 * 113.61106 * 89.11427 * 27 15 14 49 49 H 0.97000 * 125.63784 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7149 -0.1745 -2.1882 6 6 2.9447 -1.1746 -3.1536 7 6 2.3009 -2.2865 -2.7440 8 6 2.2749 -3.6089 -3.4662 9 6 3.4933 -4.4115 -3.0886 10 8 4.3031 -3.9544 -2.3100 11 7 3.6829 -5.6372 -3.6160 12 6 4.8676 -6.4171 -3.2492 13 1 5.2855 -6.1246 -2.2861 14 6 4.6773 -7.9354 -3.4025 15 6 5.1679 -7.7714 -4.8507 16 1 4.3685 -7.5613 -5.5614 17 6 6.0810 -8.8797 -5.3079 18 8 6.3603 -9.7819 -4.5543 19 8 6.5849 -8.8639 -6.5519 20 6 7.4577 -9.9633 -6.9235 21 6 7.9226 -9.7771 -8.3449 22 6 7.1919 -10.3161 -9.3873 23 6 7.6157 -10.1408 -10.6914 24 6 8.7760 -9.4362 -10.9524 25 6 9.5094 -8.9017 -9.9097 26 6 9.0828 -9.0723 -8.6059 27 6 5.9132 -6.5141 -4.3726 28 7 1.6770 -2.0077 -1.5643 29 1 -0.3933 0.4417 -0.7650 30 1 1.7923 -0.5138 0.8899 31 1 1.5615 2.4678 1.2085 32 1 3.5346 1.7702 -0.0322 33 1 3.0945 0.8363 -2.2121 34 1 3.5325 -1.0713 -4.0537 35 1 1.3765 -4.1586 -3.1855 36 1 2.2734 -3.4354 -4.5423 37 1 3.0354 -6.0026 -4.2389 38 1 5.3486 -8.5248 -2.7781 39 1 3.6380 -8.2551 -3.3258 40 1 8.3208 -9.9829 -6.2582 41 1 6.9130 -10.9037 -6.8400 42 1 6.2878 -10.8702 -9.1832 43 1 7.0425 -10.5581 -11.5061 44 1 9.1094 -9.3031 -11.9709 45 1 10.4161 -8.3516 -10.1135 46 1 9.6560 -8.6551 -7.7912 47 1 5.8717 -5.6863 -5.0805 48 1 6.9226 -6.7151 -4.0135 49 1 1.1412 -2.6295 -1.0475 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12636046_14644196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:54:22 Heat of formation + Delta-G solvation = -51.442088 kcal Electronic energy + Delta-G solvation = -31476.744299 eV Core-core repulsion = 26951.088696 eV Total energy + Delta-G solvation = -4525.655603 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.161 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.34746 -42.05545 -40.88222 -40.12051 -39.08263 -37.68677 -37.49044 -34.44595 -33.23463 -32.90151 -31.90170 -31.88710 -29.57150 -28.45637 -26.88123 -26.79769 -25.17545 -23.58246 -22.94561 -22.28970 -22.09279 -21.33986 -21.01661 -20.42240 -19.10166 -18.87235 -18.35852 -17.97230 -17.61241 -17.34302 -17.18855 -16.67413 -16.35361 -16.26512 -16.05591 -16.04768 -15.46527 -15.27460 -14.92066 -14.74108 -14.56781 -14.40589 -14.25711 -14.19548 -14.03402 -13.94007 -13.84576 -13.77489 -13.56479 -13.46607 -13.27422 -12.95571 -12.70323 -12.16717 -12.12566 -12.07985 -11.99054 -11.86427 -11.77871 -11.73267 -11.42190 -11.02798 -10.63988 -10.14918 -9.91266 -9.87813 -9.77810 -8.94016 -4.96115 0.14378 0.41315 1.03730 1.11931 1.27272 1.59160 1.69208 1.69673 1.86302 1.95929 2.25893 2.52319 2.83148 3.20901 3.31207 3.51344 3.52695 3.64419 3.70203 3.73568 3.76685 3.80697 3.97959 4.04229 4.08855 4.16499 4.22009 4.24940 4.30833 4.40550 4.48293 4.50920 4.54274 4.61457 4.65032 4.65703 4.70089 4.80882 4.81930 4.87458 4.95690 5.00112 5.06515 5.27408 5.29802 5.31240 5.47348 5.50379 5.51659 5.54593 5.99510 6.01769 6.15376 6.51062 6.61646 6.68503 6.71633 7.25273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.052 4.052 3 Si 0.809 3.191 4 C -0.022 4.022 5 C -0.203 4.203 6 C -0.199 4.199 7 C 0.032 3.968 8 C -0.066 4.066 9 C 0.514 3.486 10 O -0.577 6.577 11 N -0.699 5.699 12 C 0.124 3.876 13 H 0.088 0.912 14 C -0.117 4.117 15 C -0.102 4.102 16 H 0.156 0.844 17 C 0.470 3.530 18 O -0.537 6.537 19 O -0.353 6.353 20 C 0.108 3.892 21 C -0.113 4.113 22 C -0.106 4.106 23 C -0.130 4.130 24 C -0.116 4.116 25 C -0.131 4.131 26 C -0.109 4.109 27 C -0.129 4.129 28 N -0.537 5.537 29 H 0.397 0.603 30 H 0.099 0.901 31 H -0.293 1.293 32 H -0.295 1.295 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.148 0.852 37 H 0.421 0.579 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.130 0.870 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 -0.324 -7.837 9.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.162 4.162 3 Si 0.714 3.286 4 C -0.136 4.136 5 C -0.228 4.228 6 C -0.223 4.223 7 C -0.082 4.082 8 C -0.106 4.106 9 C 0.302 3.698 10 O -0.455 6.455 11 N -0.352 5.352 12 C 0.018 3.982 13 H 0.106 0.894 14 C -0.155 4.155 15 C -0.120 4.120 16 H 0.173 0.827 17 C 0.315 3.685 18 O -0.426 6.426 19 O -0.270 6.270 20 C 0.035 3.965 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.149 4.149 26 C -0.127 4.127 27 C -0.168 4.168 28 N -0.132 5.132 29 H 0.248 0.752 30 H 0.117 0.883 31 H -0.220 1.220 32 H -0.222 1.222 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.166 0.834 37 H 0.260 0.740 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.152 0.848 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.159 0.841 46 H 0.148 0.852 47 H 0.111 0.889 48 H 0.106 0.894 49 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.589 -0.122 -6.032 7.020 hybrid contribution 0.204 -1.463 0.401 1.530 sum -3.385 -1.585 -5.631 6.759 Atomic orbital electron populations 1.86439 1.17163 1.82224 1.50727 1.24907 0.85155 1.11216 0.94908 0.93085 0.77318 0.74092 0.84121 1.20959 1.06339 0.86068 1.00203 1.20913 1.04616 1.00861 0.96402 1.20856 1.05671 0.93391 1.02428 1.19945 1.01960 0.96811 0.89466 1.20259 0.96833 0.90021 1.03444 1.21104 0.87620 0.81515 0.79580 1.90773 1.47570 1.70615 1.36564 1.45520 1.24946 1.16584 1.48154 1.21620 0.86770 0.91376 0.98467 0.89364 1.23281 1.04228 0.94753 0.93248 1.22798 0.98119 0.92002 0.99125 0.82689 1.24167 0.78788 0.86512 0.79079 1.90680 1.58825 1.37777 1.55349 1.86599 1.59338 1.48647 1.32369 1.21868 0.93297 0.88397 0.92970 1.19571 0.96777 1.01532 0.93432 1.21317 0.99451 0.99050 0.92625 1.21488 0.97204 0.99133 0.96938 1.21608 0.94852 0.96499 1.00383 1.21473 1.00864 1.00167 0.92403 1.21302 0.96060 0.97375 0.97934 1.23351 0.98843 0.96027 0.98589 1.41880 1.41282 1.10897 1.19159 0.75242 0.88313 1.22036 1.22186 0.83250 0.84027 0.85088 0.83389 0.74035 0.88646 0.87681 0.90403 0.89999 0.84754 0.83837 0.83882 0.84071 0.85163 0.88892 0.89403 0.74390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.28 12.88 -148.98 -1.92 -2.20 16 2 C -0.05 -0.08 3.08 71.23 0.22 0.14 16 3 Si 0.81 -0.18 30.58 68.60 2.10 1.92 16 4 C -0.02 -0.08 6.51 41.08 0.27 0.19 16 5 C -0.20 -0.85 9.37 22.14 0.21 -0.64 16 6 C -0.20 -0.82 10.76 22.14 0.24 -0.58 16 7 C 0.03 0.04 5.66 41.08 0.23 0.28 16 8 C -0.07 0.44 6.24 29.10 0.18 0.62 16 9 C 0.51 -0.24 7.82 87.66 0.69 0.44 16 10 O -0.58 -6.47 15.63 -3.04 -0.05 -6.52 16 11 N -0.70 4.59 5.26 -440.03 -2.32 2.28 16 12 C 0.12 -0.35 4.32 45.52 0.20 -0.16 16 13 H 0.09 0.25 7.46 -2.39 -0.02 0.23 16 14 C -0.12 0.53 7.15 31.12 0.22 0.75 16 15 C -0.10 0.46 4.13 -11.02 -0.05 0.42 16 16 H 0.16 -1.64 8.14 -2.38 -0.02 -1.66 16 17 C 0.47 1.34 7.49 71.24 0.53 1.87 16 18 O -0.54 -4.88 15.65 21.96 0.34 -4.54 16 19 O -0.35 -1.18 10.20 -51.37 -0.52 -1.70 16 20 C 0.11 0.28 5.59 71.23 0.40 0.68 16 21 C -0.11 -0.27 5.52 -19.86 -0.11 -0.38 16 22 C -0.11 -0.09 9.70 22.27 0.22 0.13 16 23 C -0.13 0.08 10.05 22.27 0.22 0.31 16 24 C -0.12 0.10 10.05 22.27 0.22 0.32 16 25 C -0.13 0.00 10.05 22.27 0.22 0.23 16 26 C -0.11 -0.17 9.70 22.27 0.22 0.04 16 27 C -0.13 0.40 7.43 31.12 0.23 0.63 16 28 N -0.54 -1.02 6.07 -171.12 -1.04 -2.06 16 29 H 0.40 -2.95 8.70 -74.06 -0.64 -3.59 16 30 H 0.10 0.34 7.96 -2.39 -0.02 0.32 16 31 H -0.29 -1.71 7.11 99.48 0.71 -1.00 16 32 H -0.29 -1.86 7.11 99.48 0.71 -1.15 16 33 H 0.15 0.15 6.22 -2.91 -0.02 0.13 16 34 H 0.14 0.27 8.06 -2.91 -0.02 0.24 16 35 H 0.13 -1.64 8.14 -2.39 -0.02 -1.66 16 36 H 0.15 -1.83 8.14 -2.39 -0.02 -1.85 16 37 H 0.42 -5.92 8.70 -92.71 -0.81 -6.73 16 38 H 0.10 -0.04 7.44 -2.39 -0.02 -0.06 16 39 H 0.10 -0.86 8.14 -2.38 -0.02 -0.88 16 40 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 41 H 0.08 0.15 8.08 -2.39 -0.02 0.14 16 42 H 0.13 -0.30 8.06 -2.91 -0.02 -0.32 16 43 H 0.14 -0.69 8.06 -2.91 -0.02 -0.72 16 44 H 0.14 -0.72 8.06 -2.91 -0.02 -0.75 16 45 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 46 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 47 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 48 H 0.09 -0.08 8.10 -2.39 -0.02 -0.10 16 49 H 0.42 -0.59 8.96 -92.71 -0.83 -1.42 16 Total: 0.00 -29.13 419.87 -0.08 -29.21 By element: Atomic # 1 Polarization: -20.45 SS G_CDS: -1.24 Total: -21.68 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 4.56 Total: 5.28 kcal Atomic # 7 Polarization: 3.58 SS G_CDS: -3.36 Total: 0.22 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -2.15 Total: -14.96 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: 2.10 Total: 1.92 kcal Total: -29.13 -0.08 -29.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12636046_14644196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.229 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds