Wall clock time and date at job start Sat Mar 6 2021 17:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47182 * 2 1 4 4 C 1.50696 * 109.47185 * 119.99778 * 2 1 3 5 5 C 1.38274 * 119.94301 * 65.00307 * 4 2 1 6 6 C 1.38141 * 120.05552 * 180.27916 * 5 4 2 7 7 C 1.38738 * 119.94395 * 359.44290 * 6 5 4 8 8 O 1.35898 * 120.05510 * 180.29870 * 7 6 5 9 9 C 1.42901 * 117.00084 * 0.27943 * 8 7 6 10 10 C 1.53002 * 109.47063 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47304 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99904 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.46507 * 120.00026 * 180.02562 * 13 11 10 15 15 H 1.08997 * 112.84480 * 336.19456 * 14 13 11 16 16 C 1.53779 * 113.61543 * 107.50080 * 14 13 11 17 17 C 1.53787 * 87.07807 * 89.11355 * 16 14 13 18 18 H 1.08993 * 113.61574 * 270.88248 * 17 16 14 19 19 C 1.50707 * 113.68657 * 139.98904 * 17 16 14 20 20 O 1.20823 * 120.00153 * 262.46285 * 19 17 16 21 21 O 1.34230 * 119.99822 * 82.46737 * 19 17 16 22 22 C 1.45198 * 116.99806 * 179.97438 * 21 19 17 23 23 C 1.50704 * 109.46886 * 179.97438 * 22 21 19 24 24 C 1.38231 * 119.99940 * 269.72536 * 23 22 21 25 25 C 1.38239 * 119.99621 * 179.74104 * 24 23 22 26 26 C 1.38229 * 120.00020 * 0.53615 * 25 24 23 27 27 C 1.38237 * 120.00378 * 359.74069 * 26 25 24 28 28 C 1.38235 * 119.99581 * 359.97438 * 27 26 25 29 29 C 1.53781 * 87.08151 * 25.43459 * 17 16 14 30 30 C 1.38730 * 119.88604 * 0.57278 * 7 6 5 31 31 C 1.38149 * 119.94512 * 359.70901 * 30 7 6 32 32 H 0.96702 * 114.00258 * 300.00375 * 1 2 3 33 33 H 1.08998 * 109.47382 * 240.00321 * 2 1 3 34 34 H 1.48498 * 110.00262 * 178.67946 * 3 2 1 35 35 H 1.48500 * 109.99835 * 300.00120 * 3 2 1 36 36 H 1.08002 * 119.96836 * 359.97438 * 5 4 2 37 37 H 1.07998 * 120.02987 * 179.70379 * 6 5 4 38 38 H 1.08998 * 109.47080 * 299.99770 * 9 8 7 39 39 H 1.08996 * 109.47179 * 59.99778 * 9 8 7 40 40 H 1.08998 * 109.47210 * 299.99967 * 10 9 8 41 41 H 1.09004 * 109.46922 * 60.00270 * 10 9 8 42 42 H 0.96993 * 120.00095 * 0.02562 * 13 11 10 43 43 H 1.09001 * 113.61068 * 203.65972 * 16 14 13 44 44 H 1.08999 * 113.61558 * 334.57005 * 16 14 13 45 45 H 1.08995 * 109.47011 * 299.99536 * 22 21 19 46 46 H 1.08997 * 109.47015 * 60.00242 * 22 21 19 47 47 H 1.07996 * 120.00354 * 0.02562 * 24 23 22 48 48 H 1.07997 * 119.99980 * 180.29582 * 25 24 23 49 49 H 1.08008 * 120.00234 * 179.76511 * 26 25 24 50 50 H 1.07996 * 120.00412 * 179.97438 * 27 26 25 51 51 H 1.07997 * 120.00288 * 179.97438 * 28 27 26 52 52 H 1.09004 * 113.60952 * 220.01921 * 29 17 16 53 53 H 1.08997 * 113.69834 * 89.12187 * 29 17 16 54 54 H 1.07997 * 120.02650 * 179.67529 * 30 7 6 55 55 H 1.07997 * 119.96847 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2304 5 6 1.6841 -2.0605 1.3972 6 6 2.1385 -2.7127 2.5270 7 6 2.8535 -2.0145 3.4893 8 8 3.3068 -2.6552 4.5987 9 6 3.0162 -4.0502 4.7065 10 6 3.6026 -4.5940 6.0109 11 6 3.2956 -6.0649 6.1249 12 8 2.6698 -6.6235 5.2489 13 7 3.7163 -6.7598 7.2003 14 6 3.4183 -8.1900 7.3109 15 1 2.5465 -8.4869 6.7279 16 6 4.6438 -9.0932 7.0937 17 6 4.9003 -8.9753 8.6054 18 1 5.5272 -8.1260 8.8770 19 6 5.3504 -10.2633 9.2454 20 8 4.5493 -10.9691 9.8111 21 8 6.6413 -10.6265 9.1870 22 6 7.0032 -11.8793 9.8257 23 6 8.4814 -12.1198 9.6583 24 6 8.9481 -12.8180 8.5603 25 6 10.3045 -13.0340 8.4040 26 6 11.1933 -12.5613 9.3514 27 6 10.7262 -11.8680 10.4523 28 6 9.3703 -11.6469 10.6056 29 6 3.3945 -8.7040 8.7601 30 6 3.1000 -0.6598 3.3198 31 6 2.6383 -0.0109 2.1909 32 1 -0.3934 0.4417 0.7650 33 1 1.7924 -0.5138 -0.8900 34 1 3.5346 1.7703 0.0322 35 1 1.5615 2.4679 -1.2085 36 1 1.1309 -2.6045 0.6459 37 1 1.9410 -3.7663 2.6591 38 1 1.9362 -4.1975 4.7040 39 1 3.4571 -4.5795 3.8618 40 1 4.6826 -4.4466 6.0130 41 1 3.1620 -4.0647 6.8558 42 1 4.2165 -6.3131 7.9011 43 1 4.3902 -10.1031 6.7713 44 1 5.4210 -8.6350 6.4820 45 1 6.7608 -11.8292 10.8872 46 1 6.4480 -12.6959 9.3643 47 1 8.2534 -13.1908 7.8223 48 1 10.6695 -13.5754 7.5438 49 1 12.2528 -12.7333 9.2312 50 1 11.4205 -11.4991 11.1927 51 1 9.0052 -11.1057 11.4659 52 1 3.1632 -7.9315 9.4936 53 1 2.7982 -9.6065 8.8934 54 1 3.6518 -0.1129 4.0699 55 1 2.8297 1.0438 2.0588 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12636046_4549602.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:54:51 Heat of formation + Delta-G solvation = -105.463479 kcal Electronic energy + Delta-G solvation = -36175.329071 eV Core-core repulsion = 31110.310884 eV Total energy + Delta-G solvation = -5065.018187 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.181 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.12325 -41.38414 -40.95951 -40.16882 -39.36938 -38.96114 -37.50421 -37.16795 -34.50046 -33.28627 -33.10874 -32.08795 -31.89461 -31.37468 -28.67446 -27.10435 -26.85845 -26.41081 -25.48242 -23.67152 -23.59012 -22.76907 -22.26219 -22.16830 -21.58513 -20.43049 -19.57357 -18.99500 -18.35389 -18.22036 -17.78161 -17.61931 -17.46979 -17.26123 -17.19443 -16.81281 -16.44166 -16.15761 -16.08082 -16.01364 -15.86008 -15.61946 -15.28005 -14.90157 -14.80502 -14.60902 -14.47921 -14.39558 -14.26471 -14.19301 -14.03786 -13.92896 -13.66872 -13.50828 -13.45569 -13.36291 -12.99690 -12.86096 -12.77680 -12.17310 -12.14726 -12.13088 -12.12124 -11.87004 -11.79154 -11.77004 -11.73449 -11.66149 -11.42156 -11.10000 -10.40320 -10.19585 -10.04661 -9.92046 -9.88555 -9.20954 -4.98420 0.13763 0.26449 0.32909 0.40516 1.03930 1.34150 1.49191 1.64470 1.67156 1.70090 1.98717 2.44171 2.66151 2.82469 3.20727 3.30701 3.52214 3.54851 3.57447 3.64747 3.73259 3.74808 3.76506 3.83651 3.87425 3.91720 3.98553 4.03631 4.08190 4.16064 4.21208 4.25118 4.30655 4.34870 4.41780 4.48357 4.53495 4.56159 4.60846 4.62102 4.64363 4.69116 4.71277 4.76974 4.81751 4.87564 4.95016 4.99437 5.00014 5.05750 5.19424 5.29910 5.31993 5.46512 5.46748 5.49173 5.50936 5.53815 5.69965 5.98749 6.31900 6.43872 6.61755 6.79224 7.14266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.073 4.073 3 Si 0.780 3.220 4 C -0.162 4.162 5 C -0.065 4.065 6 C -0.216 4.216 7 C 0.123 3.877 8 O -0.318 6.318 9 C 0.072 3.928 10 C -0.131 4.131 11 C 0.524 3.476 12 O -0.582 6.582 13 N -0.697 5.697 14 C 0.123 3.877 15 H 0.095 0.905 16 C -0.129 4.129 17 C -0.104 4.104 18 H 0.154 0.846 19 C 0.470 3.530 20 O -0.536 6.536 21 O -0.354 6.354 22 C 0.108 3.892 23 C -0.113 4.113 24 C -0.109 4.109 25 C -0.131 4.131 26 C -0.116 4.116 27 C -0.130 4.130 28 C -0.107 4.107 29 C -0.117 4.117 30 C -0.150 4.150 31 C -0.075 4.075 32 H 0.395 0.605 33 H 0.102 0.898 34 H -0.284 1.284 35 H -0.301 1.301 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.422 0.578 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.131 0.869 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.144 0.856 51 H 0.135 0.865 52 H 0.105 0.895 53 H 0.098 0.902 54 H 0.153 0.847 55 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 3.517 5.635 8.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.182 4.182 3 Si 0.686 3.314 4 C -0.163 4.163 5 C -0.083 4.083 6 C -0.234 4.234 7 C 0.077 3.923 8 O -0.232 6.232 9 C -0.004 4.004 10 C -0.170 4.170 11 C 0.312 3.688 12 O -0.462 6.462 13 N -0.349 5.349 14 C 0.017 3.983 15 H 0.113 0.887 16 C -0.168 4.168 17 C -0.123 4.123 18 H 0.171 0.829 19 C 0.314 3.686 20 O -0.425 6.425 21 O -0.270 6.270 22 C 0.035 3.965 23 C -0.113 4.113 24 C -0.127 4.127 25 C -0.149 4.149 26 C -0.134 4.134 27 C -0.148 4.148 28 C -0.125 4.125 29 C -0.155 4.155 30 C -0.169 4.169 31 C -0.093 4.093 32 H 0.245 0.755 33 H 0.119 0.881 34 H -0.210 1.210 35 H -0.229 1.229 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.260 0.740 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.149 0.851 48 H 0.159 0.841 49 H 0.161 0.839 50 H 0.161 0.839 51 H 0.152 0.848 52 H 0.123 0.877 53 H 0.116 0.884 54 H 0.171 0.829 55 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.477 3.217 4.420 7.066 hybrid contribution 0.075 -1.396 -0.093 1.401 sum 4.551 1.821 4.327 6.539 Atomic orbital electron populations 1.86462 1.17488 1.82235 1.50482 1.25167 0.85131 1.11023 0.96902 0.93755 0.77830 0.75049 0.84797 1.20337 1.02854 0.94901 0.98207 1.20927 0.96786 0.94151 0.96485 1.21453 1.04307 1.01219 0.96457 1.19199 0.94109 0.92707 0.86246 1.85949 1.74045 1.24001 1.39190 1.22444 1.00765 0.78438 0.98707 1.21436 1.05931 0.90671 0.98998 1.20679 0.77663 0.89350 0.81143 1.90758 1.41864 1.72402 1.41142 1.45489 1.57343 1.08760 1.23322 1.21679 0.98246 0.80645 0.97728 0.88670 1.23364 0.99085 1.01346 0.93026 1.22817 0.99074 0.93151 0.97219 0.82890 1.24160 0.79756 0.88233 0.76408 1.90680 1.54825 1.54771 1.42231 1.86599 1.28580 1.40704 1.71160 1.21866 0.92296 0.83963 0.98386 1.19576 0.93418 1.01270 0.97042 1.21308 0.96605 0.98022 0.96753 1.21473 0.92999 1.00279 1.00164 1.21609 1.01064 0.96731 0.93972 1.21488 0.95566 0.99000 0.98738 1.21321 0.93608 0.98513 0.99029 1.23289 0.92845 1.03039 0.96299 1.20663 1.04579 0.91454 1.00185 1.21035 0.95841 1.00072 0.92325 0.75525 0.88091 1.21034 1.22940 0.85610 0.85071 0.91823 0.92020 0.85147 0.85067 0.73987 0.89111 0.89010 0.89987 0.90334 0.85099 0.84076 0.83912 0.83862 0.84753 0.87696 0.88377 0.82900 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.93 12.83 -148.98 -1.91 -2.84 16 2 C -0.07 -0.05 2.80 71.23 0.20 0.15 16 3 Si 0.78 -1.52 29.80 68.60 2.04 0.52 16 4 C -0.16 -0.25 5.35 -19.85 -0.11 -0.36 16 5 C -0.07 -0.25 9.68 22.26 0.22 -0.04 16 6 C -0.22 -0.87 9.04 22.37 0.20 -0.67 16 7 C 0.12 0.40 6.69 22.51 0.15 0.55 16 8 O -0.32 -0.59 10.14 -92.40 -0.94 -1.53 16 9 C 0.07 -0.02 4.03 71.98 0.29 0.27 16 10 C -0.13 0.87 6.07 29.85 0.18 1.05 16 11 C 0.52 -0.90 7.83 87.66 0.69 -0.22 16 12 O -0.58 -4.74 15.58 -3.04 -0.05 -4.78 16 13 N -0.70 4.97 5.26 -440.03 -2.32 2.66 16 14 C 0.12 -0.49 4.32 45.52 0.20 -0.30 16 15 H 0.10 0.07 7.46 -2.39 -0.02 0.05 16 16 C -0.13 0.52 7.43 31.12 0.23 0.75 16 17 C -0.10 0.52 4.13 -11.01 -0.05 0.48 16 18 H 0.15 -1.62 8.14 -2.39 -0.02 -1.64 16 19 C 0.47 1.14 7.49 71.24 0.53 1.67 16 20 O -0.54 -4.58 15.65 21.97 0.34 -4.24 16 21 O -0.35 -1.10 10.20 -51.42 -0.52 -1.62 16 22 C 0.11 0.25 5.59 71.24 0.40 0.65 16 23 C -0.11 -0.25 5.52 -19.86 -0.11 -0.36 16 24 C -0.11 -0.16 9.70 22.27 0.22 0.06 16 25 C -0.13 0.01 10.05 22.27 0.22 0.23 16 26 C -0.12 0.09 10.05 22.27 0.22 0.32 16 27 C -0.13 0.08 10.05 22.27 0.22 0.30 16 28 C -0.11 -0.09 9.70 22.27 0.22 0.13 16 29 C -0.12 0.62 7.15 31.12 0.22 0.84 16 30 C -0.15 -0.06 9.99 22.37 0.22 0.16 16 31 C -0.08 0.07 8.66 22.25 0.19 0.27 16 32 H 0.39 -2.59 8.70 -74.06 -0.64 -3.24 16 33 H 0.10 0.24 7.96 -2.39 -0.02 0.22 16 34 H -0.28 -0.69 7.11 99.48 0.71 0.02 16 35 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 36 H 0.13 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.13 0.43 6.30 -2.91 -0.02 0.41 16 38 H 0.06 0.10 7.61 -2.39 -0.02 0.08 16 39 H 0.06 0.11 7.63 -2.39 -0.02 0.09 16 40 H 0.13 -1.39 8.14 -2.39 -0.02 -1.41 16 41 H 0.13 -1.41 8.14 -2.38 -0.02 -1.43 16 42 H 0.42 -5.89 8.70 -92.71 -0.81 -6.70 16 43 H 0.09 -0.19 8.10 -2.39 -0.02 -0.21 16 44 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.08 0.14 8.08 -2.39 -0.02 0.12 16 46 H 0.08 0.18 8.07 -2.39 -0.02 0.16 16 47 H 0.13 -0.12 8.06 -2.91 -0.02 -0.15 16 48 H 0.14 -0.54 8.06 -2.91 -0.02 -0.57 16 49 H 0.14 -0.71 8.06 -2.91 -0.02 -0.73 16 50 H 0.14 -0.68 8.06 -2.91 -0.02 -0.70 16 51 H 0.13 -0.29 8.06 -2.91 -0.02 -0.32 16 52 H 0.10 -0.91 8.14 -2.38 -0.02 -0.93 16 53 H 0.10 -0.15 7.44 -2.39 -0.02 -0.16 16 54 H 0.15 -0.54 8.06 -2.91 -0.02 -0.57 16 55 H 0.16 -0.99 4.90 -2.91 -0.01 -1.00 16 Total: 0.00 -26.50 463.06 0.94 -25.57 By element: Atomic # 1 Polarization: -19.20 SS G_CDS: -0.48 Total: -19.68 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 4.77 Total: 5.93 kcal Atomic # 7 Polarization: 4.97 SS G_CDS: -2.32 Total: 2.66 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -3.08 Total: -15.00 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: 2.04 Total: 0.52 kcal Total: -26.50 0.94 -25.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12636046_4549602.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.897 kcal (2) G-P(sol) polarization free energy of solvation -26.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds