Wall clock time and date at job start Sat Mar 6 2021 17:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86301 * 109.47284 * 2 1 4 4 C 1.50703 * 109.46767 * 119.99641 * 2 1 3 5 5 C 1.38239 * 119.97181 * 245.02114 * 4 2 1 6 6 C 1.38291 * 120.11298 * 179.97438 * 5 4 2 7 7 C 1.38122 * 120.05486 * 359.76575 * 6 5 4 8 8 C 1.38759 * 119.94072 * 0.51057 * 7 6 5 9 9 O 1.35901 * 120.05168 * 179.74585 * 8 7 6 10 10 C 1.42899 * 117.00383 * 359.72459 * 9 8 7 11 11 C 1.50695 * 109.47400 * 180.02562 * 10 9 8 12 12 O 1.21282 * 119.99917 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00305 * 180.02562 * 11 10 9 14 14 C 1.46506 * 120.00033 * 179.97438 * 13 11 10 15 15 H 1.08992 * 112.90684 * 336.24748 * 14 13 11 16 16 C 1.54049 * 113.61276 * 107.61836 * 14 13 11 17 17 C 1.53781 * 87.08031 * 89.07129 * 16 14 13 18 18 H 1.08999 * 113.61181 * 270.87794 * 17 16 14 19 19 C 1.50698 * 113.61565 * 139.97986 * 17 16 14 20 20 O 1.20832 * 119.99673 * 262.50413 * 19 17 16 21 21 O 1.34224 * 120.00535 * 82.49826 * 19 17 16 22 22 C 1.45199 * 117.00347 * 179.97438 * 21 19 17 23 23 C 1.50696 * 109.47270 * 180.02562 * 22 21 19 24 24 C 1.38236 * 120.00326 * 269.73276 * 23 22 21 25 25 C 1.38232 * 119.99919 * 179.76680 * 24 23 22 26 26 C 1.38230 * 120.00211 * 0.48186 * 25 24 23 27 27 C 1.38241 * 119.99888 * 359.79012 * 26 25 24 28 28 C 1.38230 * 119.99986 * 359.95820 * 27 26 25 29 29 C 1.53781 * 87.08070 * 25.42738 * 17 16 14 30 30 C 1.38167 * 119.97530 * 65.00222 * 4 2 1 31 31 H 0.96701 * 114.00539 * 300.00474 * 1 2 3 32 32 H 1.09000 * 109.47279 * 239.99583 * 2 1 3 33 33 H 1.48493 * 110.00107 * 178.68029 * 3 2 1 34 34 H 1.48505 * 109.99386 * 299.99736 * 3 2 1 35 35 H 1.08006 * 119.94529 * 359.97438 * 5 4 2 36 36 H 1.07998 * 119.97598 * 180.02562 * 6 5 4 37 37 H 1.08003 * 120.02803 * 180.27968 * 7 6 5 38 38 H 1.08997 * 109.47308 * 59.99850 * 10 9 8 39 39 H 1.09001 * 109.46756 * 299.99985 * 10 9 8 40 40 H 0.97002 * 120.00078 * 359.97438 * 13 11 10 41 41 H 1.09005 * 113.62125 * 334.52173 * 16 14 13 42 42 H 1.08996 * 113.68970 * 203.62749 * 16 14 13 43 43 H 1.09000 * 109.46915 * 300.00779 * 22 21 19 44 44 H 1.09005 * 109.46506 * 60.00463 * 22 21 19 45 45 H 1.08006 * 119.99731 * 359.97438 * 24 23 22 46 46 H 1.07998 * 120.00156 * 180.24936 * 25 24 23 47 47 H 1.07998 * 120.00581 * 179.76811 * 26 25 24 48 48 H 1.08006 * 120.00073 * 179.97438 * 27 26 25 49 49 H 1.08005 * 119.99952 * 179.97438 * 28 27 26 50 50 H 1.09002 * 113.61445 * 89.11830 * 29 17 16 51 51 H 1.09002 * 113.61408 * 219.93560 * 29 17 16 52 52 H 1.08007 * 120.02078 * 0.02562 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6382 -0.0115 2.1912 6 6 3.1000 -0.6603 3.3218 7 6 2.8516 -2.0078 3.4961 8 6 2.1472 -2.7128 2.5306 9 8 1.9060 -4.0397 2.6973 10 6 2.4120 -4.6466 3.8880 11 6 2.0510 -6.1096 3.8987 12 8 1.4219 -6.5857 2.9776 13 7 2.4264 -6.8888 4.9323 14 6 2.0750 -8.3111 4.9429 15 1 1.2047 -8.5376 4.3271 16 6 3.2735 -9.2448 4.6884 17 6 3.5037 -9.2345 6.2089 18 1 4.1551 -8.4283 6.5464 19 6 3.8940 -10.5777 6.7695 20 8 3.0566 -11.2890 7.2723 21 8 5.1719 -10.9841 6.7102 22 6 5.4754 -12.2889 7.2703 23 6 6.9473 -12.5723 7.1149 24 6 7.4120 -13.2130 5.9815 25 6 8.7628 -13.4686 5.8369 26 6 9.6477 -13.0924 6.8299 27 6 9.1823 -12.4567 7.9659 28 6 7.8322 -12.1964 8.1082 29 6 2.0058 -8.9179 6.3543 30 6 1.6845 -2.0595 1.3979 31 1 -0.3934 0.4417 0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 3.5346 1.7703 0.0321 34 1 1.5615 2.4678 -1.2086 35 1 2.8302 1.0430 2.0586 36 1 3.6517 -0.1121 4.0711 37 1 3.2085 -2.5131 4.3814 38 1 1.9752 -4.1578 4.7588 39 1 3.4964 -4.5401 3.9174 40 1 2.9293 -6.5080 5.6692 41 1 4.0788 -8.7772 4.1218 42 1 2.9919 -10.2219 4.2961 43 1 5.2133 -12.3000 8.3282 44 1 4.9007 -13.0521 6.7455 45 1 6.7200 -13.5109 5.2076 46 1 9.1263 -13.9656 4.9496 47 1 10.7025 -13.2954 6.7187 48 1 9.8736 -12.1631 8.7420 49 1 7.4686 -11.7001 8.9959 50 1 1.3761 -9.8054 6.4176 51 1 1.7875 -8.1876 7.1334 52 1 1.1322 -2.6050 0.6470 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12636046_4860298.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:55:53 Heat of formation + Delta-G solvation = -96.806040 kcal Electronic energy + Delta-G solvation = -34606.382112 eV Core-core repulsion = 29697.276959 eV Total energy + Delta-G solvation = -4909.105153 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.165 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.13933 -41.52089 -40.84197 -40.15432 -39.38592 -38.70645 -37.49764 -37.20613 -34.56041 -33.21375 -32.45820 -31.89313 -31.65189 -29.63375 -28.33752 -26.92254 -26.86046 -26.56438 -23.66202 -23.58808 -23.20788 -22.56891 -22.19668 -21.69344 -20.47714 -19.37313 -19.03979 -18.46444 -18.19537 -17.66990 -17.61862 -17.48019 -17.40263 -17.13981 -16.92822 -16.66287 -16.17415 -16.10158 -16.05671 -15.68047 -15.52826 -15.17042 -14.93349 -14.74141 -14.59394 -14.39555 -14.18607 -14.16620 -14.01422 -13.94887 -13.76942 -13.50573 -13.44808 -13.32039 -12.99479 -12.89729 -12.59464 -12.17799 -12.12867 -12.12443 -12.01073 -11.88033 -11.79020 -11.73452 -11.67322 -11.43173 -11.06788 -10.48489 -10.26195 -9.92334 -9.91934 -9.88422 -9.27084 -4.98517 0.13875 0.22122 0.40453 0.40687 1.04080 1.27879 1.38772 1.44623 1.66446 1.69354 1.98136 2.55295 2.68801 2.82559 3.19184 3.29443 3.46366 3.52864 3.54470 3.63670 3.69351 3.73445 3.76526 3.85917 3.98583 4.02577 4.08132 4.10125 4.14776 4.16242 4.21355 4.26404 4.30790 4.35504 4.46306 4.50374 4.53619 4.61206 4.64250 4.64610 4.67843 4.77413 4.86223 4.95123 4.96888 4.99157 5.05883 5.25835 5.30254 5.38418 5.41068 5.46515 5.46796 5.51091 5.53947 5.71132 5.98884 6.26734 6.44259 6.62058 6.75619 7.08716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.086 4.086 3 Si 0.795 3.205 4 C -0.086 4.086 5 C -0.156 4.156 6 C -0.070 4.070 7 C -0.201 4.201 8 C 0.114 3.886 9 O -0.324 6.324 10 C 0.038 3.962 11 C 0.517 3.483 12 O -0.571 6.571 13 N -0.690 5.690 14 C 0.123 3.877 15 H 0.092 0.908 16 C -0.130 4.130 17 C -0.102 4.102 18 H 0.157 0.843 19 C 0.470 3.530 20 O -0.536 6.536 21 O -0.353 6.353 22 C 0.108 3.892 23 C -0.113 4.113 24 C -0.109 4.109 25 C -0.132 4.132 26 C -0.116 4.116 27 C -0.130 4.130 28 C -0.106 4.106 29 C -0.115 4.115 30 C -0.152 4.152 31 H 0.396 0.604 32 H 0.099 0.901 33 H -0.281 1.281 34 H -0.302 1.302 35 H 0.151 0.849 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.425 0.575 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.130 0.870 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.144 0.856 49 H 0.135 0.865 50 H 0.098 0.902 51 H 0.108 0.892 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 4.899 8.509 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.195 4.195 3 Si 0.700 3.300 4 C -0.086 4.086 5 C -0.173 4.173 6 C -0.088 4.088 7 C -0.219 4.219 8 C 0.069 3.931 9 O -0.238 6.238 10 C -0.040 4.040 11 C 0.303 3.697 12 O -0.449 6.449 13 N -0.344 5.344 14 C 0.017 3.983 15 H 0.111 0.889 16 C -0.169 4.169 17 C -0.121 4.121 18 H 0.174 0.826 19 C 0.315 3.685 20 O -0.425 6.425 21 O -0.270 6.270 22 C 0.035 3.965 23 C -0.113 4.113 24 C -0.127 4.127 25 C -0.149 4.149 26 C -0.134 4.134 27 C -0.148 4.148 28 C -0.124 4.124 29 C -0.153 4.153 30 C -0.171 4.171 31 H 0.246 0.754 32 H 0.116 0.884 33 H -0.208 1.208 34 H -0.230 1.230 35 H 0.168 0.832 36 H 0.182 0.818 37 H 0.181 0.819 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.263 0.737 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.148 0.852 46 H 0.159 0.841 47 H 0.161 0.839 48 H 0.162 0.838 49 H 0.153 0.847 50 H 0.117 0.883 51 H 0.126 0.874 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.157 4.443 6.932 10.281 hybrid contribution 0.093 -1.291 -0.114 1.300 sum 6.250 3.152 6.817 9.771 Atomic orbital electron populations 1.86482 1.17391 1.82316 1.50455 1.25430 0.85302 1.11872 0.96907 0.93569 0.77719 0.74093 0.84593 1.20198 0.98300 0.93066 0.97039 1.21215 1.00676 1.00564 0.94883 1.21357 0.96700 0.93590 0.97139 1.21653 1.03496 0.96363 1.00437 1.19180 0.96300 0.82295 0.95328 1.86121 1.74698 1.20862 1.42115 1.22742 1.02745 0.89801 0.88699 1.20582 0.78526 0.88602 0.81953 1.90783 1.40826 1.75994 1.37287 1.45281 1.57585 1.08311 1.23264 1.21736 0.98109 0.80021 0.98433 0.88937 1.23416 0.99357 1.01000 0.93153 1.22810 0.99688 0.91848 0.97755 0.82573 1.24146 0.79759 0.89469 0.75176 1.90685 1.51913 1.56852 1.43048 1.86595 1.29670 1.36838 1.73909 1.21866 0.92806 0.82240 0.99596 1.19575 0.93590 1.01678 0.96452 1.21307 0.96609 0.98016 0.96790 1.21468 0.93067 1.00283 1.00129 1.21609 1.01025 0.97096 0.93656 1.21491 0.95613 0.98943 0.98723 1.21323 0.93612 0.98557 0.98930 1.23285 0.93202 1.02215 0.96552 1.20298 1.04328 0.94654 0.97785 0.75439 0.88353 1.20757 1.23035 0.83194 0.81813 0.81933 0.85278 0.85447 0.73663 0.88989 0.89127 0.89928 0.90389 0.85160 0.84131 0.83922 0.83827 0.84682 0.88336 0.87371 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.78 12.83 -148.98 -1.91 -3.69 16 2 C -0.09 -0.15 2.80 71.24 0.20 0.05 16 3 Si 0.80 -1.75 29.80 68.60 2.04 0.30 16 4 C -0.09 -0.17 5.35 -19.88 -0.11 -0.27 16 5 C -0.16 0.47 8.67 22.28 0.19 0.66 16 6 C -0.07 0.38 10.04 22.25 0.22 0.60 16 7 C -0.20 0.78 9.04 22.37 0.20 0.98 16 8 C 0.11 0.40 6.69 22.51 0.15 0.55 16 9 O -0.32 -1.96 9.67 -73.40 -0.71 -2.67 16 10 C 0.04 -0.17 5.22 71.23 0.37 0.20 16 11 C 0.52 0.57 7.91 87.66 0.69 1.26 16 12 O -0.57 -7.83 16.10 16.00 0.26 -7.57 16 13 N -0.69 4.63 5.26 -439.60 -2.31 2.32 16 14 C 0.12 -0.41 4.34 45.61 0.20 -0.21 16 15 H 0.09 0.20 7.47 -2.39 -0.02 0.19 16 16 C -0.13 0.48 7.44 31.21 0.23 0.71 16 17 C -0.10 0.56 4.14 -11.01 -0.05 0.51 16 18 H 0.16 -1.82 8.14 -2.39 -0.02 -1.84 16 19 C 0.47 0.99 7.48 71.24 0.53 1.52 16 20 O -0.54 -4.45 15.65 21.95 0.34 -4.11 16 21 O -0.35 -0.98 10.20 -51.36 -0.52 -1.51 16 22 C 0.11 0.23 5.59 71.23 0.40 0.63 16 23 C -0.11 -0.23 5.52 -19.87 -0.11 -0.34 16 24 C -0.11 -0.16 9.70 22.27 0.22 0.06 16 25 C -0.13 0.01 10.05 22.27 0.22 0.23 16 26 C -0.12 0.11 10.05 22.27 0.22 0.33 16 27 C -0.13 0.11 10.05 22.27 0.22 0.33 16 28 C -0.11 -0.06 9.70 22.27 0.22 0.16 16 29 C -0.11 0.63 7.14 31.12 0.22 0.85 16 30 C -0.15 -0.97 9.62 22.36 0.22 -0.75 16 31 H 0.40 -2.23 8.70 -74.06 -0.64 -2.87 16 32 H 0.10 0.41 7.96 -2.39 -0.02 0.39 16 33 H -0.28 -0.47 7.11 99.48 0.71 0.23 16 34 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 35 H 0.15 -1.19 4.90 -2.91 -0.01 -1.20 16 36 H 0.16 -1.94 8.06 -2.91 -0.02 -1.96 16 37 H 0.16 -1.84 6.30 -2.91 -0.02 -1.86 16 38 H 0.13 -1.49 7.65 -2.39 -0.02 -1.51 16 39 H 0.13 -1.45 7.67 -2.39 -0.02 -1.47 16 40 H 0.42 -6.42 8.70 -92.71 -0.81 -7.23 16 41 H 0.09 -0.39 8.14 -2.38 -0.02 -0.41 16 42 H 0.09 -0.14 8.09 -2.39 -0.02 -0.16 16 43 H 0.08 0.11 8.08 -2.39 -0.02 0.09 16 44 H 0.08 0.17 8.08 -2.38 -0.02 0.15 16 45 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 46 H 0.14 -0.53 8.06 -2.91 -0.02 -0.55 16 47 H 0.14 -0.72 8.06 -2.91 -0.02 -0.74 16 48 H 0.14 -0.72 8.06 -2.91 -0.02 -0.74 16 49 H 0.14 -0.35 8.06 -2.91 -0.02 -0.38 16 50 H 0.10 -0.15 7.44 -2.39 -0.02 -0.17 16 51 H 0.11 -1.03 8.14 -2.39 -0.02 -1.05 16 52 H 0.11 1.12 8.06 -2.91 -0.02 1.09 16 Total: 0.00 -33.44 442.13 1.42 -32.02 By element: Atomic # 1 Polarization: -22.69 SS G_CDS: -0.44 Total: -23.13 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 4.67 Total: 8.05 kcal Atomic # 7 Polarization: 4.63 SS G_CDS: -2.31 Total: 2.32 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -2.54 Total: -19.55 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: 2.04 Total: 0.30 kcal Total: -33.44 1.42 -32.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12636046_4860298.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.785 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds