Wall clock time and date at job start Sat Mar 6 2021 17:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33818 * 122.44994 * 2 1 4 4 C 1.50706 * 124.52150 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.46628 * 246.54069 * 4 3 2 6 6 Si 1.86300 * 109.46993 * 126.53927 * 4 3 2 7 7 S 1.70620 * 110.95486 * 179.74762 * 3 2 1 8 8 C 1.75831 * 91.56076 * 0.35629 * 7 3 2 9 9 C 1.46585 * 125.45789 * 179.91758 * 8 7 3 10 10 O 1.21701 * 120.00298 * 179.69786 * 9 8 7 11 11 N 1.34775 * 119.99775 * 359.41239 * 9 8 7 12 12 C 1.46499 * 119.99949 * 180.27694 * 11 9 8 13 13 H 1.08995 * 112.85372 * 334.67532 * 12 11 9 14 14 C 1.53789 * 113.61117 * 105.86862 * 12 11 9 15 15 C 1.54056 * 86.98404 * 89.16239 * 14 12 11 16 16 H 1.09000 * 113.68956 * 270.86890 * 15 14 12 17 17 C 1.50705 * 113.61756 * 139.97824 * 15 14 12 18 18 O 1.20818 * 119.99793 * 262.50065 * 17 15 14 19 19 O 1.34229 * 119.99618 * 82.50103 * 17 15 14 20 20 C 1.45200 * 116.99793 * 180.02562 * 19 17 15 21 21 C 1.50693 * 109.47673 * 180.02562 * 20 19 17 22 22 C 1.38233 * 120.00294 * 269.72880 * 21 20 19 23 23 C 1.38230 * 120.00435 * 179.73603 * 22 21 20 24 24 C 1.38237 * 119.99996 * 0.55697 * 23 22 21 25 25 C 1.38241 * 119.99827 * 359.69268 * 24 23 22 26 26 C 1.38234 * 119.99799 * 0.02873 * 25 24 23 27 27 C 1.53781 * 87.07780 * 25.43096 * 15 14 12 28 28 C 1.36648 * 109.08517 * 359.64926 * 8 7 3 29 29 H 1.08997 * 109.47306 * 274.96321 * 1 2 3 30 30 H 1.09007 * 109.47226 * 34.96166 * 1 2 3 31 31 H 1.09000 * 109.47170 * 154.95944 * 1 2 3 32 32 H 1.08999 * 109.47160 * 6.53703 * 4 3 2 33 33 H 0.96701 * 113.99852 * 180.02562 * 5 4 3 34 34 H 1.48500 * 109.99994 * 60.00270 * 6 4 3 35 35 H 1.48500 * 109.99654 * 181.31716 * 6 4 3 36 36 H 0.97006 * 119.99922 * 0.28210 * 11 9 8 37 37 H 1.09005 * 113.61163 * 203.66586 * 14 12 11 38 38 H 1.08999 * 113.61333 * 334.56411 * 14 12 11 39 39 H 1.09006 * 109.47392 * 300.00204 * 20 19 17 40 40 H 1.09000 * 109.47501 * 59.99574 * 20 19 17 41 41 H 1.08006 * 119.99560 * 359.97438 * 22 21 20 42 42 H 1.07998 * 120.00396 * 180.27207 * 23 22 21 43 43 H 1.07997 * 120.00340 * 179.71936 * 24 23 22 44 44 H 1.07996 * 120.00234 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.00027 * 179.97438 * 26 25 24 46 46 H 1.09001 * 113.61311 * 220.02292 * 27 15 14 47 47 H 1.08998 * 113.61342 * 89.12242 * 27 15 14 48 48 H 1.08004 * 123.35205 * 180.24150 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6354 2.5162 0.0006 5 8 1.9423 3.1646 -1.2353 6 14 2.3555 3.4964 1.4118 7 16 3.8970 0.7892 0.0070 8 6 3.5937 -0.9427 -0.0009 9 6 4.6231 -1.9863 -0.0015 10 8 4.3001 -3.1597 -0.0017 11 7 5.9272 -1.6463 -0.0075 12 6 6.9560 -2.6892 -0.0141 13 1 6.6091 -3.6288 0.4159 14 6 7.6561 -2.8552 -1.3733 15 6 8.6619 -1.7915 -0.8934 16 1 8.3642 -0.7696 -1.1283 17 6 10.0873 -2.0896 -1.2816 18 8 10.8310 -2.6184 -0.4899 19 8 10.5303 -1.7676 -2.5071 20 6 11.9141 -2.0847 -2.8121 21 6 12.2296 -1.6532 -4.2210 22 6 12.0440 -2.5328 -5.2712 23 6 12.3283 -2.1353 -6.5642 24 6 12.8091 -0.8619 -6.8060 25 6 12.9996 0.0160 -5.7553 26 6 12.7098 -0.3797 -4.4628 27 6 8.3115 -2.2210 0.5411 28 6 2.2446 -1.1601 -0.0005 29 1 -0.3634 0.0889 1.0238 30 1 -0.3634 0.8423 -0.5889 31 1 -0.3633 -0.9311 -0.4350 32 1 0.5537 2.4512 0.1179 33 1 1.5935 4.0638 -1.3049 34 1 3.8299 3.5924 1.2633 35 1 1.7586 4.8558 1.4425 36 1 6.1846 -0.7110 -0.0073 37 1 8.0989 -3.8405 -1.5189 38 1 7.0488 -2.5337 -2.2194 39 1 12.5690 -1.5598 -2.1165 40 1 12.0701 -3.1593 -2.7172 41 1 11.6733 -3.5294 -5.0818 42 1 12.1791 -2.8210 -7.3852 43 1 13.0354 -0.5528 -7.8157 44 1 13.3755 1.0107 -5.9440 45 1 12.8590 0.3060 -3.6419 46 1 8.2330 -1.3877 1.2394 47 1 8.9332 -3.0331 0.9179 48 1 1.8019 -2.1452 -0.0010 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12636046_6739946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:56:41 Heat of formation + Delta-G solvation = -60.761980 kcal Electronic energy + Delta-G solvation = -31677.345249 eV Core-core repulsion = 27177.637522 eV Total energy + Delta-G solvation = -4499.707727 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.122 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.14707 -41.13392 -40.23136 -39.80177 -39.01031 -37.65027 -37.48889 -34.58519 -33.22895 -32.44477 -31.90383 -29.90036 -28.80516 -27.32105 -26.90232 -26.21332 -24.33186 -23.59902 -22.81756 -22.23845 -22.04599 -20.59992 -19.89120 -19.44792 -18.81954 -18.56287 -18.25872 -17.62853 -17.46781 -17.42286 -16.95168 -16.33309 -16.27347 -16.06552 -15.92449 -15.84199 -15.36287 -14.99190 -14.80260 -14.65717 -14.42455 -14.38382 -14.16847 -14.00488 -13.95894 -13.75304 -13.49414 -13.42494 -13.32138 -13.15120 -12.99101 -12.94016 -12.64340 -12.22212 -12.18672 -12.14026 -11.93274 -11.87310 -11.82170 -11.74903 -11.44751 -11.33407 -10.74017 -10.35240 -9.92929 -9.89563 -9.70562 -9.42519 -4.98428 -0.68881 0.12644 0.31323 0.39682 0.76647 1.01601 1.10065 1.26384 1.52708 1.66760 1.85497 1.88468 2.02104 2.81367 3.16086 3.20021 3.24981 3.50115 3.55622 3.66281 3.72457 3.74247 3.75432 3.95116 4.06429 4.10775 4.15278 4.20123 4.24675 4.29013 4.41418 4.43429 4.52543 4.53138 4.58559 4.62662 4.63617 4.71312 4.81218 4.83566 4.89757 4.92191 4.94157 5.03838 5.04830 5.27626 5.31644 5.36278 5.43539 5.45564 5.50074 5.52731 5.97855 6.24112 6.52030 6.59882 6.94212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.101 4.101 3 C -0.194 4.194 4 C -0.050 4.050 5 O -0.554 6.554 6 Si 0.731 3.269 7 S 0.223 5.777 8 C -0.284 4.284 9 C 0.597 3.403 10 O -0.563 6.563 11 N -0.700 5.700 12 C 0.123 3.877 13 H 0.105 0.895 14 C -0.128 4.128 15 C -0.108 4.108 16 H 0.146 0.854 17 C 0.473 3.527 18 O -0.532 6.532 19 O -0.354 6.354 20 C 0.108 3.892 21 C -0.114 4.114 22 C -0.108 4.108 23 C -0.131 4.131 24 C -0.116 4.116 25 C -0.131 4.131 26 C -0.107 4.107 27 C -0.114 4.114 28 C -0.051 4.051 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.400 0.600 34 H -0.275 1.275 35 H -0.264 1.264 36 H 0.410 0.590 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.134 0.866 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 5.668 0.334 6.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C -0.313 4.313 4 C -0.161 4.161 5 O -0.365 6.365 6 Si 0.632 3.368 7 S 0.493 5.507 8 C -0.404 4.404 9 C 0.385 3.615 10 O -0.443 6.443 11 N -0.351 5.351 12 C 0.017 3.983 13 H 0.123 0.877 14 C -0.167 4.167 15 C -0.127 4.127 16 H 0.163 0.837 17 C 0.317 3.683 18 O -0.421 6.421 19 O -0.271 6.271 20 C 0.035 3.965 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.149 4.149 24 C -0.134 4.134 25 C -0.149 4.149 26 C -0.125 4.125 27 C -0.152 4.152 28 C -0.085 4.085 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.252 0.748 34 H -0.201 1.201 35 H -0.189 1.189 36 H 0.247 0.753 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.150 0.850 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.152 0.848 46 H 0.121 0.879 47 H 0.126 0.874 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.594 5.748 0.677 5.819 hybrid contribution -1.025 -0.016 -1.124 1.521 sum -1.618 5.732 -0.447 5.973 Atomic orbital electron populations 1.20683 0.87383 1.03726 1.04064 1.18849 0.99302 0.90111 1.03168 1.23489 0.98331 0.99043 1.10467 1.24362 1.04514 0.91910 0.95271 1.86567 1.80773 1.33959 1.35194 0.93989 0.78685 0.79768 0.84318 1.82896 1.04072 0.96194 1.67490 1.24499 0.98001 0.97777 1.20134 1.17093 0.82199 0.87085 0.75169 1.90837 1.82196 1.19733 1.51524 1.45452 1.04402 1.10397 1.74833 1.21784 0.87102 0.92374 0.97011 0.87732 1.23431 0.95812 0.98896 0.98570 1.22850 0.86682 1.03794 0.99363 0.83665 1.24000 0.91062 0.74104 0.79096 1.90674 1.58441 1.40895 1.52136 1.86602 1.31018 1.75429 1.34041 1.21883 0.79476 1.01497 0.93674 1.19588 1.02590 0.95620 0.93618 1.21310 0.98576 1.00001 0.92693 1.21479 0.99224 0.97175 0.97029 1.21612 0.97619 0.93779 1.00350 1.21486 1.00056 1.00911 0.92402 1.21316 0.97982 0.95089 0.98109 1.23305 0.93989 1.03673 0.94267 1.20815 0.91025 1.00463 0.96191 0.88784 0.90594 0.90782 0.87042 0.74846 1.20101 1.18868 0.75274 0.88182 0.89392 0.89973 0.90129 0.85019 0.84004 0.83880 0.83898 0.84847 0.87871 0.87409 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.47 9.48 71.23 0.68 1.15 16 2 C -0.10 -0.03 5.78 -21.05 -0.12 -0.15 16 3 C -0.19 -0.04 4.86 24.68 0.12 0.08 16 4 C -0.05 0.17 2.76 71.24 0.20 0.37 16 5 O -0.55 0.66 12.86 -148.98 -1.92 -1.25 16 6 Si 0.73 -3.27 32.12 68.60 2.20 -1.06 16 7 S 0.22 0.11 20.82 -56.49 -1.18 -1.07 16 8 C -0.28 -1.12 6.45 24.08 0.16 -0.97 16 9 C 0.60 3.79 7.78 86.42 0.67 4.47 16 10 O -0.56 -7.78 16.46 -4.35 -0.07 -7.85 16 11 N -0.70 -0.09 5.26 -444.08 -2.34 -2.42 16 12 C 0.12 -0.04 4.30 45.52 0.20 0.16 16 13 H 0.10 0.30 7.50 -2.39 -0.02 0.28 16 14 C -0.13 0.13 7.45 31.22 0.23 0.36 16 15 C -0.11 0.20 4.15 -10.92 -0.05 0.16 16 16 H 0.15 -0.89 8.14 -2.39 -0.02 -0.91 16 17 C 0.47 1.99 7.49 71.24 0.53 2.52 16 18 O -0.53 -5.13 15.65 21.99 0.34 -4.78 16 19 O -0.35 -1.70 10.20 -51.40 -0.52 -2.22 16 20 C 0.11 0.38 5.59 71.23 0.40 0.78 16 21 C -0.11 -0.39 5.52 -19.87 -0.11 -0.50 16 22 C -0.11 -0.26 9.70 22.27 0.22 -0.05 16 23 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 24 C -0.12 -0.02 10.05 22.27 0.22 0.20 16 25 C -0.13 -0.07 10.05 22.27 0.22 0.15 16 26 C -0.11 -0.22 9.70 22.27 0.22 -0.01 16 27 C -0.11 0.30 7.15 31.12 0.22 0.52 16 28 C -0.05 -0.17 9.78 21.72 0.21 0.04 16 29 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.08 -0.43 6.98 -2.38 -0.02 -0.45 16 31 H 0.07 -0.35 8.10 -2.39 -0.02 -0.37 16 32 H 0.11 -0.88 6.24 -2.39 -0.01 -0.90 16 33 H 0.40 -3.77 8.74 -74.06 -0.65 -4.41 16 34 H -0.28 -0.39 7.11 99.48 0.71 0.31 16 35 H -0.26 0.36 7.11 99.48 0.71 1.07 16 36 H 0.41 -1.83 7.82 -92.70 -0.72 -2.56 16 37 H 0.10 -0.07 8.10 -2.38 -0.02 -0.09 16 38 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.08 0.23 8.08 -2.38 -0.02 0.21 16 40 H 0.08 0.25 8.08 -2.39 -0.02 0.23 16 41 H 0.13 -0.01 8.06 -2.91 -0.02 -0.03 16 42 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 43 H 0.14 -0.58 8.06 -2.91 -0.02 -0.61 16 44 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 45 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 46 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 47 H 0.11 -0.04 7.43 -2.39 -0.02 -0.06 16 48 H 0.15 0.49 8.06 -2.91 -0.02 0.46 16 Total: 0.00 -22.28 423.65 0.64 -21.64 By element: Atomic # 1 Polarization: -10.06 SS G_CDS: -0.32 Total: -10.38 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 4.44 Total: 9.40 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: -2.34 Total: -2.42 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -2.17 Total: -16.11 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: 2.20 Total: -1.06 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -1.18 Total: -1.07 kcal Total: -22.28 0.64 -21.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12636046_6739946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.122 kcal (2) G-P(sol) polarization free energy of solvation -22.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds