Wall clock time and date at job start Sat Mar 6 2021 17:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86300 * 109.47182 * 2 1 4 4 C 1.50695 * 109.47339 * 120.00169 * 2 1 3 5 5 C 1.32771 * 124.71353 * 65.31070 * 4 2 1 6 6 C 1.44428 * 113.08159 * 180.14802 * 5 4 2 7 7 C 1.47195 * 123.46085 * 179.81295 * 6 5 4 8 8 O 1.21635 * 119.99542 * 359.72277 * 7 6 5 9 9 N 1.34774 * 120.00172 * 179.72945 * 7 6 5 10 10 C 1.46493 * 120.00085 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.85332 * 336.19720 * 10 9 7 12 12 C 1.53788 * 113.69191 * 107.46278 * 10 9 7 13 13 C 1.53781 * 87.07960 * 89.12681 * 12 10 9 14 14 H 1.08996 * 113.69296 * 270.87584 * 13 12 10 15 15 C 1.50696 * 113.61184 * 139.98228 * 13 12 10 16 16 O 1.20830 * 120.00232 * 262.50381 * 15 13 12 17 17 O 1.34231 * 120.00303 * 82.50500 * 15 13 12 18 18 C 1.45198 * 117.00344 * 180.02562 * 17 15 13 19 19 C 1.50700 * 109.47061 * 179.97438 * 18 17 15 20 20 C 1.38234 * 120.00260 * 89.99854 * 19 18 17 21 21 C 1.38234 * 120.00240 * 179.97438 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.26327 * 21 20 19 23 23 C 1.38238 * 119.99752 * 359.47832 * 22 21 20 24 24 C 1.38234 * 120.00033 * 0.49775 * 23 22 21 25 25 C 1.53775 * 113.61696 * 204.99783 * 10 9 7 26 26 C 1.36005 * 113.07886 * 359.54076 * 6 5 4 27 27 S 1.70446 * 110.81866 * 0.24502 * 26 6 5 28 28 H 0.96704 * 113.99731 * 300.00064 * 1 2 3 29 29 H 1.09002 * 109.47265 * 239.99909 * 2 1 3 30 30 H 1.48494 * 110.00249 * 178.68316 * 3 2 1 31 31 H 1.48503 * 109.99700 * 300.00194 * 3 2 1 32 32 H 1.07999 * 123.46245 * 359.93597 * 5 4 2 33 33 H 0.97004 * 119.99837 * 359.97438 * 9 7 6 34 34 H 1.09002 * 113.61314 * 334.57621 * 12 10 9 35 35 H 1.09001 * 113.61629 * 203.67765 * 12 10 9 36 36 H 1.08999 * 109.47408 * 59.99614 * 18 17 15 37 37 H 1.08999 * 109.47279 * 299.99635 * 18 17 15 38 38 H 1.07999 * 119.99751 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.99744 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 41 41 H 1.07999 * 119.99934 * 180.25938 * 23 22 21 42 42 H 1.08001 * 120.00294 * 179.76453 * 24 23 22 43 43 H 1.09001 * 113.61887 * 156.25393 * 25 10 9 44 44 H 1.09000 * 113.61322 * 25.34767 * 25 10 9 45 45 H 1.08009 * 124.59255 * 180.24783 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7536 -2.0016 1.4835 6 6 2.3370 -2.4184 2.7373 7 6 2.2713 -3.7988 3.2439 8 8 1.6987 -4.6566 2.5990 9 7 2.8454 -4.1123 4.4222 10 6 2.7795 -5.4860 4.9267 11 1 1.9382 -6.0468 4.5192 12 6 4.1182 -6.2387 4.8462 13 6 4.4250 -5.6828 6.2468 14 1 4.9254 -4.7146 6.2337 15 6 5.0984 -6.6774 7.1568 16 8 4.4436 -7.3073 7.9534 17 8 6.4256 -6.8636 7.0827 18 6 7.0063 -7.8378 7.9893 19 6 8.4943 -7.9107 7.7623 20 6 9.3436 -7.0849 8.4748 21 6 10.7085 -7.1521 8.2669 22 6 11.2239 -8.0415 7.3427 23 6 10.3752 -8.8711 6.6340 24 6 9.0102 -8.8042 6.8422 25 6 2.9044 -5.5874 6.4560 26 6 2.9583 -1.4055 3.3990 27 16 2.8399 0.0523 2.5239 28 1 -0.3933 0.4417 0.7651 29 1 1.7924 -0.5138 -0.8900 30 1 3.5346 1.7703 0.0321 31 1 1.5614 2.4678 -1.2085 32 1 1.2241 -2.6708 0.8216 33 1 3.3022 -3.4282 4.9363 34 1 4.7852 -5.8617 4.0709 35 1 4.0087 -7.3230 4.8211 36 1 6.5625 -8.8160 7.8043 37 1 6.8098 -7.5385 9.0188 38 1 8.9406 -6.3870 9.1938 39 1 11.3719 -6.5065 8.8234 40 1 12.2900 -8.0910 7.1771 41 1 10.7781 -9.5689 5.9149 42 1 8.3468 -9.4497 6.2858 43 1 2.4632 -6.4936 6.8711 44 1 2.5917 -4.6845 6.9804 45 1 3.4590 -1.5107 4.3502 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12636046_6894386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:56:45 Heat of formation + Delta-G solvation = -58.784583 kcal Electronic energy + Delta-G solvation = -29476.778164 eV Core-core repulsion = 25132.693802 eV Total energy + Delta-G solvation = -4344.084362 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.107 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.13460 -41.15482 -40.19722 -39.41582 -38.61492 -37.49927 -37.08123 -34.53137 -33.21117 -31.89079 -31.68997 -28.68440 -27.08611 -26.91056 -26.86511 -25.50768 -23.58590 -22.86112 -22.28661 -22.15367 -20.64390 -20.49193 -19.04132 -18.81073 -18.34016 -18.01237 -17.62262 -17.60572 -17.30633 -16.83580 -16.36746 -16.11524 -16.10124 -15.98659 -15.75055 -15.34466 -14.97716 -14.75529 -14.44647 -14.38625 -14.18309 -14.11131 -13.94494 -13.82294 -13.67844 -13.56474 -13.45318 -13.32434 -12.96758 -12.61874 -12.30072 -12.16912 -12.12683 -11.94869 -11.85687 -11.78893 -11.72984 -11.42555 -11.09085 -10.57572 -10.27798 -9.98709 -9.91654 -9.88273 -9.42524 -5.13206 -0.32534 0.14062 0.40908 0.40942 0.71093 0.82194 1.04306 1.23382 1.61387 1.68887 1.91315 1.98963 2.23357 2.82731 3.19505 3.29521 3.40703 3.52418 3.63622 3.67833 3.73741 3.76215 3.88837 3.98165 3.99638 4.08108 4.16492 4.21444 4.28715 4.31021 4.41730 4.47145 4.53831 4.61266 4.64719 4.68433 4.72064 4.77528 4.86042 4.95188 4.95967 5.03439 5.06112 5.17703 5.30039 5.44331 5.46956 5.51371 5.54099 5.99096 6.42478 6.62042 6.69808 7.11915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.039 4.039 3 Si 0.743 3.257 4 C -0.251 4.251 5 C -0.076 4.076 6 C -0.184 4.184 7 C 0.580 3.420 8 O -0.581 6.581 9 N -0.692 5.692 10 C 0.122 3.878 11 H 0.095 0.905 12 C -0.130 4.130 13 C -0.103 4.103 14 H 0.154 0.846 15 C 0.471 3.529 16 O -0.535 6.535 17 O -0.353 6.353 18 C 0.108 3.892 19 C -0.113 4.113 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.116 4.116 23 C -0.132 4.132 24 C -0.109 4.109 25 C -0.115 4.115 26 C -0.187 4.187 27 S 0.254 5.746 28 H 0.397 0.603 29 H 0.113 0.887 30 H -0.256 1.256 31 H -0.275 1.275 32 H 0.130 0.870 33 H 0.417 0.583 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 6.909 4.390 9.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.150 4.150 3 Si 0.644 3.356 4 C -0.368 4.368 5 C -0.106 4.106 6 C -0.202 4.202 7 C 0.368 3.632 8 O -0.462 6.462 9 N -0.344 5.344 10 C 0.016 3.984 11 H 0.113 0.887 12 C -0.169 4.169 13 C -0.122 4.122 14 H 0.171 0.829 15 C 0.316 3.684 16 O -0.424 6.424 17 O -0.270 6.270 18 C 0.035 3.965 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.148 4.148 22 C -0.134 4.134 23 C -0.150 4.150 24 C -0.127 4.127 25 C -0.152 4.152 26 C -0.325 4.325 27 S 0.521 5.479 28 H 0.247 0.753 29 H 0.130 0.870 30 H -0.181 1.181 31 H -0.200 1.200 32 H 0.148 0.852 33 H 0.256 0.744 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.148 0.852 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.331 7.849 3.494 10.111 hybrid contribution -0.367 -2.516 -0.209 2.551 sum 4.963 5.334 3.285 7.992 Atomic orbital electron populations 1.86509 1.17026 1.82223 1.50376 1.24698 0.85170 1.10311 0.94846 0.94203 0.79371 0.74168 0.87840 1.24888 1.09766 0.98241 1.03866 1.20989 0.98882 0.95010 0.95690 1.20031 1.08264 0.93875 0.98017 1.17895 0.77296 0.87273 0.80751 1.90807 1.45412 1.51210 1.58781 1.45321 1.56862 1.11010 1.21229 1.21708 0.98540 0.83098 0.95022 0.88724 1.23371 0.97565 1.01346 0.94577 1.22797 0.96353 0.98745 0.94255 0.82887 1.24101 0.80308 0.82054 0.81978 1.90682 1.65774 1.47869 1.38082 1.86598 1.23809 1.57780 1.58820 1.21872 0.89735 0.91780 0.93137 1.19582 0.93140 0.99063 0.99550 1.21317 0.93899 0.97876 0.99283 1.21488 0.95254 0.99366 0.98682 1.21608 1.01169 0.95129 0.95466 1.21471 0.93216 0.99919 1.00355 1.21304 0.96267 0.98305 0.96787 1.23292 0.91919 1.05513 0.94524 1.26215 1.02700 0.97809 1.05813 1.82893 1.48444 1.07838 1.08773 0.75291 0.86993 1.18096 1.20049 0.85205 0.74411 0.89223 0.88866 0.90354 0.89915 0.84704 0.83837 0.83927 0.84122 0.85158 0.88097 0.87546 0.77499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.32 12.88 -148.98 -1.92 -2.24 16 2 C -0.04 0.04 2.94 71.23 0.21 0.25 16 3 Si 0.74 -3.09 30.92 68.60 2.12 -0.97 16 4 C -0.25 0.22 5.65 24.51 0.14 0.36 16 5 C -0.08 -0.30 9.95 22.67 0.23 -0.08 16 6 C -0.18 -0.20 5.98 -19.87 -0.12 -0.32 16 7 C 0.58 2.76 7.79 86.60 0.67 3.44 16 8 O -0.58 -8.57 16.40 -4.14 -0.07 -8.64 16 9 N -0.69 2.25 5.24 -443.52 -2.32 -0.07 16 10 C 0.12 -0.20 4.32 45.52 0.20 -0.01 16 11 H 0.09 0.31 7.46 -2.38 -0.02 0.29 16 12 C -0.13 0.31 7.43 31.12 0.23 0.54 16 13 C -0.10 0.43 4.14 -11.01 -0.05 0.39 16 14 H 0.15 -1.54 8.14 -2.39 -0.02 -1.56 16 15 C 0.47 1.29 7.48 71.23 0.53 1.82 16 16 O -0.53 -4.68 15.65 21.95 0.34 -4.34 16 17 O -0.35 -1.17 10.20 -51.43 -0.52 -1.69 16 18 C 0.11 0.27 5.59 71.24 0.40 0.67 16 19 C -0.11 -0.27 5.52 -19.86 -0.11 -0.38 16 20 C -0.11 -0.09 9.70 22.27 0.22 0.13 16 21 C -0.13 0.08 10.05 22.27 0.22 0.30 16 22 C -0.12 0.08 10.05 22.27 0.22 0.30 16 23 C -0.13 -0.02 10.05 22.27 0.22 0.20 16 24 C -0.11 -0.19 9.70 22.27 0.22 0.03 16 25 C -0.11 0.49 7.15 31.12 0.22 0.71 16 26 C -0.19 1.25 10.38 67.30 0.70 1.95 16 27 S 0.25 -1.76 20.20 -56.49 -1.14 -2.90 16 28 H 0.40 -3.19 8.70 -74.05 -0.64 -3.83 16 29 H 0.11 0.07 7.96 -2.39 -0.02 0.05 16 30 H -0.26 0.28 7.11 99.48 0.71 0.99 16 31 H -0.27 -0.77 7.11 99.48 0.71 -0.07 16 32 H 0.13 1.09 8.06 -2.91 -0.02 1.06 16 33 H 0.42 -4.52 7.20 -92.71 -0.67 -5.18 16 34 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.09 -0.09 8.09 -2.39 -0.02 -0.11 16 36 H 0.08 0.19 8.08 -2.39 -0.02 0.17 16 37 H 0.08 0.14 8.08 -2.39 -0.02 0.12 16 38 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 39 H 0.14 -0.68 8.06 -2.91 -0.02 -0.71 16 40 H 0.14 -0.69 8.06 -2.91 -0.02 -0.71 16 41 H 0.14 -0.50 8.06 -2.91 -0.02 -0.53 16 42 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 43 H 0.10 -0.09 7.43 -2.39 -0.02 -0.10 16 44 H 0.11 -0.85 8.14 -2.39 -0.02 -0.87 16 45 H 0.21 -3.08 7.01 -2.91 -0.02 -3.10 16 Total: 0.00 -25.91 402.37 0.62 -25.29 By element: Atomic # 1 Polarization: -14.51 SS G_CDS: -0.23 Total: -14.74 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.36 Total: 10.30 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -2.32 Total: -0.07 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -2.17 Total: -16.91 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.12 Total: -0.97 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -1.14 Total: -2.90 kcal Total: -25.91 0.62 -25.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12636046_6894386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.493 kcal (2) G-P(sol) polarization free energy of solvation -25.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds