Wall clock time and date at job start Sat Mar 6 2021 21:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00164 * 2 1 4 4 O 1.20823 * 120.00173 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00005 * 179.97438 * 3 2 1 6 6 N 1.46503 * 112.84656 * 35.51741 * 5 3 2 7 7 C 1.34775 * 120.00255 * 66.99341 * 6 5 3 8 8 O 1.21279 * 119.99794 * 354.94647 * 7 6 5 9 9 C 1.50702 * 120.00087 * 174.94825 * 7 6 5 10 10 O 1.42904 * 109.46796 * 179.97438 * 9 7 6 11 11 C 1.35994 * 116.99442 * 179.97438 * 10 9 7 12 12 C 1.39159 * 120.07150 * 180.02562 * 11 10 9 13 13 O 1.36000 * 120.07011 * 359.75343 * 12 11 10 14 14 C 1.42901 * 116.99607 * 179.97438 * 13 12 11 15 15 C 1.38565 * 119.85477 * 180.02562 * 12 11 10 16 16 C 1.38242 * 119.99852 * 0.02562 * 15 12 11 17 17 C 1.50700 * 119.92253 * 180.02562 * 16 15 12 18 18 O 1.42907 * 109.46658 * 254.97228 * 17 16 15 19 19 Si 1.86298 * 109.47473 * 14.97259 * 17 16 15 20 20 C 1.38251 * 120.14604 * 359.97438 * 16 15 12 21 21 N 1.48008 * 119.92561 * 179.97438 * 20 16 15 22 22 O 1.21800 * 120.00189 * 180.02562 * 21 20 16 23 23 O 1.21806 * 119.99674 * 0.02562 * 21 20 16 24 24 C 1.38243 * 120.14756 * 0.02562 * 20 16 15 25 25 C 1.53782 * 113.69357 * 264.25042 * 5 3 2 26 26 C 1.53778 * 87.08023 * 220.00851 * 25 5 3 27 27 H 1.09001 * 113.69453 * 139.99209 * 26 25 5 28 28 O 1.42901 * 113.61333 * 270.88093 * 26 25 5 29 29 C 1.53777 * 113.61275 * 166.71258 * 5 3 2 30 30 H 1.08996 * 109.47603 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47136 * 299.99669 * 1 2 3 32 32 H 1.08993 * 109.47143 * 59.99552 * 1 2 3 33 33 H 0.97001 * 119.99697 * 246.98642 * 6 5 3 34 34 H 1.09005 * 109.46798 * 60.00477 * 9 7 6 35 35 H 1.08994 * 109.46968 * 299.99919 * 9 7 6 36 36 H 1.08995 * 109.46908 * 60.00175 * 14 13 12 37 37 H 1.09007 * 109.46843 * 179.97438 * 14 13 12 38 38 H 1.08989 * 109.47085 * 299.99279 * 14 13 12 39 39 H 1.08004 * 119.99872 * 179.97438 * 15 12 11 40 40 H 1.09001 * 109.46845 * 134.97533 * 17 16 15 41 41 H 0.96697 * 113.99660 * 180.02562 * 18 17 16 42 42 H 1.48501 * 110.00047 * 178.68433 * 19 17 16 43 43 H 1.48503 * 109.99734 * 299.99907 * 19 17 16 44 44 H 1.08001 * 119.99691 * 180.02562 * 24 20 16 45 45 H 1.09004 * 113.60932 * 334.55624 * 25 5 3 46 46 H 1.08991 * 113.61683 * 105.45882 * 25 5 3 47 47 H 0.96697 * 114.00012 * 277.49478 * 28 26 25 48 48 H 1.09001 * 113.61041 * 254.61349 * 29 5 3 49 49 H 1.08994 * 113.61875 * 25.51885 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1922 0.2070 -0.7833 7 6 4.0356 0.1729 -2.1215 8 8 3.3029 0.9709 -2.6667 9 6 4.7707 -0.8568 -2.9402 10 8 4.4423 -0.6904 -4.3210 11 6 5.0263 -1.5462 -5.2019 12 6 4.7521 -1.4413 -6.5622 13 8 3.8956 -0.4858 -7.0129 14 6 3.6619 -0.4367 -8.4219 15 6 5.3492 -2.3160 -7.4557 16 6 6.2148 -3.2905 -6.9951 17 6 6.8637 -4.2405 -7.9684 18 8 6.2356 -5.5208 -7.8750 19 14 6.6742 -3.5808 -9.7003 20 6 6.4872 -3.3948 -5.6437 21 7 7.4142 -4.4403 -5.1558 22 8 7.6548 -4.5337 -3.9655 23 8 7.9365 -5.2074 -5.9448 24 6 5.8948 -2.5253 -4.7469 25 6 4.1755 1.4483 1.4019 26 6 5.1715 2.4294 0.7615 27 1 5.3800 3.3053 1.3758 28 8 6.3574 1.8018 0.2696 29 6 4.1099 2.6764 -0.3233 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 4.7194 -0.4754 -0.3391 34 1 4.4785 -1.8554 -2.6154 35 1 5.8447 -0.7300 -2.8040 36 1 3.2424 -1.3863 -8.7538 37 1 2.9614 0.3678 -8.6461 38 1 4.6032 -0.2542 -8.9401 39 1 5.1377 -2.2369 -8.5119 40 1 7.9230 -4.3373 -7.7303 41 1 6.6037 -6.1841 -8.4746 42 1 7.3376 -4.4926 -10.6666 43 1 5.2343 -3.4443 -10.0371 44 1 6.1097 -2.6086 -3.6918 45 1 3.4993 1.9170 2.1169 46 1 4.6426 0.5432 1.7901 47 1 7.0288 1.6439 0.9473 48 1 4.5240 2.7626 -1.3279 49 1 3.4159 3.4808 -0.0800 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12808048_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 21:16:26 Heat of formation + Delta-G solvation = -186.203574 kcal Electronic energy + Delta-G solvation = -41366.951451 eV Core-core repulsion = 35654.031091 eV Total energy + Delta-G solvation = -5712.920360 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.143 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.39846 -42.57456 -42.07264 -40.89415 -40.12406 -39.36986 -39.05795 -37.76690 -37.65748 -37.24186 -36.20076 -34.19771 -32.77514 -32.56118 -30.15160 -29.21155 -28.78606 -27.92488 -27.16350 -26.58675 -25.72858 -23.99663 -23.15577 -22.77459 -22.06116 -20.81140 -20.51528 -19.88818 -19.48901 -19.28726 -18.91380 -18.84375 -18.40289 -18.34377 -18.10134 -17.82171 -17.73739 -17.61186 -17.37254 -16.85128 -16.78947 -16.47463 -15.98731 -15.73575 -15.66129 -15.34781 -15.24869 -14.87212 -14.74080 -14.46611 -14.29309 -14.05824 -13.91352 -13.86360 -13.60693 -13.44069 -13.35224 -13.18836 -12.94085 -12.67697 -12.60325 -12.46656 -12.40833 -12.39051 -12.32169 -12.18438 -12.14650 -11.95839 -11.91416 -11.59712 -11.14997 -11.05264 -10.49083 -10.41236 -10.34527 -9.51182 -5.01453 -1.33308 -0.44703 0.18135 0.30389 0.82130 1.12857 1.13941 1.25153 1.51726 1.64862 1.82383 1.85997 1.89655 2.19111 2.89529 2.93049 3.09812 3.12786 3.27770 3.32310 3.38991 3.46406 3.52038 3.61000 3.76458 3.84968 3.91842 3.94075 4.02877 4.11431 4.14175 4.17219 4.18150 4.25577 4.27998 4.36013 4.52206 4.56248 4.60156 4.66399 4.69080 4.71662 4.73941 4.76076 4.82102 5.18796 5.19163 5.27535 5.53929 6.01064 6.25281 6.50047 6.51403 6.52844 6.93328 6.95332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.464 3.536 4 O -0.531 6.531 5 C 0.154 3.846 6 N -0.671 5.671 7 C 0.521 3.479 8 O -0.559 6.559 9 C 0.032 3.968 10 O -0.291 6.291 11 C 0.102 3.898 12 C 0.167 3.833 13 O -0.307 6.307 14 C 0.000 4.000 15 C -0.173 4.173 16 C 0.004 3.996 17 C -0.105 4.105 18 O -0.546 6.546 19 Si 0.768 3.232 20 C -0.044 4.044 21 N 0.038 4.962 22 O -0.188 6.188 23 O -0.157 6.157 24 C -0.108 4.108 25 C -0.138 4.138 26 C 0.102 3.898 27 H 0.106 0.894 28 O -0.558 6.558 29 C -0.130 4.130 30 H 0.130 0.870 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.430 0.570 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.183 0.817 40 H 0.103 0.897 41 H 0.400 0.600 42 H -0.276 1.276 43 H -0.270 1.270 44 H 0.187 0.813 45 H 0.119 0.881 46 H 0.125 0.875 47 H 0.405 0.595 48 H 0.067 0.933 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.874 0.789 1.773 4.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.307 3.693 4 O -0.419 6.419 5 C 0.064 3.936 6 N -0.328 5.328 7 C 0.307 3.693 8 O -0.436 6.436 9 C -0.045 4.045 10 O -0.204 6.204 11 C 0.054 3.946 12 C 0.118 3.882 13 O -0.219 6.219 14 C -0.093 4.093 15 C -0.191 4.191 16 C 0.002 3.998 17 C -0.211 4.211 18 O -0.357 6.357 19 Si 0.669 3.331 20 C -0.128 4.128 21 N 0.553 4.447 22 O -0.397 6.397 23 O -0.373 6.373 24 C -0.127 4.127 25 C -0.176 4.176 26 C 0.042 3.958 27 H 0.124 0.876 28 O -0.367 6.367 29 C -0.168 4.168 30 H 0.149 0.851 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.270 0.730 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.109 0.891 39 H 0.199 0.801 40 H 0.120 0.880 41 H 0.252 0.748 42 H -0.203 1.203 43 H -0.196 1.196 44 H 0.204 0.796 45 H 0.137 0.863 46 H 0.144 0.856 47 H 0.257 0.743 48 H 0.086 0.914 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.460 2.637 0.361 3.036 hybrid contribution 0.188 -2.015 0.712 2.145 sum 1.648 0.623 1.073 2.063 Atomic orbital electron populations 1.23515 0.75214 1.05614 1.02231 1.86498 1.24622 1.32917 1.83277 1.24417 0.92559 0.81398 0.70960 1.90654 1.67249 1.37478 1.46536 1.21363 0.83016 0.91159 0.98036 1.45027 1.53358 1.29341 1.05032 1.20429 0.81219 0.84764 0.82900 1.90808 1.38616 1.42191 1.72002 1.22844 1.02546 1.00187 0.78965 1.86294 1.65332 1.52222 1.16550 1.17921 0.96352 0.92497 0.87785 1.18653 0.90278 0.89182 0.90084 1.86322 1.58137 1.48962 1.28480 1.23729 1.04421 1.04947 0.76226 1.21155 0.99790 0.96524 1.01659 1.19109 0.94424 0.95174 0.91121 1.25391 1.00012 0.86278 1.09460 1.86479 1.62370 1.20543 1.66276 0.94357 0.79951 0.88065 0.70743 1.20533 1.02221 0.95674 0.94400 1.43534 0.99902 1.00821 1.00484 1.94514 1.67211 1.78008 0.99999 1.94483 1.52265 1.38295 1.52282 1.20905 0.96026 0.93225 1.02562 1.24035 0.98843 1.03591 0.91121 1.22474 0.84599 0.95276 0.93455 0.87612 1.86457 1.27605 1.82016 1.40634 1.23466 0.97761 0.94266 1.01343 0.85149 0.91194 0.93308 0.72974 0.85295 0.84782 0.91137 0.85842 0.89121 0.80064 0.87960 0.74819 1.20250 1.19643 0.79555 0.86302 0.85633 0.74336 0.91418 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.07 10.56 113.37 1.20 1.27 16 2 O -0.36 -2.30 10.41 -51.39 -0.54 -2.83 16 3 C 0.46 3.92 6.42 71.24 0.46 4.38 16 4 O -0.53 -7.79 15.66 21.97 0.34 -7.44 16 5 C 0.15 0.18 1.00 3.38 0.00 0.18 16 6 N -0.67 1.31 4.53 -423.92 -1.92 -0.61 16 7 C 0.52 2.32 7.39 87.66 0.65 2.96 16 8 O -0.56 -8.83 15.22 16.01 0.24 -8.58 16 9 C 0.03 -0.06 5.22 71.24 0.37 0.31 16 10 O -0.29 -1.69 9.45 -67.07 -0.63 -2.32 16 11 C 0.10 0.32 6.70 22.57 0.15 0.47 16 12 C 0.17 0.44 6.70 22.57 0.15 0.60 16 13 O -0.31 -1.11 10.28 -79.69 -0.82 -1.93 16 14 C 0.00 0.00 9.81 113.37 1.11 1.11 16 15 C -0.17 0.10 7.64 22.35 0.17 0.27 16 16 C 0.00 0.01 5.29 -19.86 -0.11 -0.10 16 17 C -0.10 -0.03 1.73 71.24 0.12 0.10 16 18 O -0.55 -1.71 11.77 -129.61 -1.53 -3.24 16 19 Si 0.77 -3.75 30.19 68.60 2.07 -1.67 16 20 C -0.04 -0.21 6.85 36.38 0.25 0.04 16 21 N 0.04 0.34 4.45 -46.46 -0.21 0.13 16 22 O -0.19 -1.86 18.44 18.89 0.35 -1.51 16 23 O -0.16 -1.60 14.62 25.10 0.37 -1.23 16 24 C -0.11 -0.11 8.54 22.35 0.19 0.08 16 25 C -0.14 1.06 7.20 31.12 0.22 1.29 16 26 C 0.10 -0.65 5.28 31.12 0.16 -0.48 16 27 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 28 O -0.56 4.12 13.09 -148.98 -1.95 2.17 16 29 C -0.13 -0.36 6.67 31.12 0.21 -0.15 16 30 H 0.13 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 32 H 0.05 0.29 8.13 -2.39 -0.02 0.27 16 33 H 0.43 -4.28 8.67 -92.71 -0.80 -5.08 16 34 H 0.13 -1.05 7.66 -2.38 -0.02 -1.06 16 35 H 0.13 -1.12 7.66 -2.39 -0.02 -1.14 16 36 H 0.07 -0.49 7.65 -2.39 -0.02 -0.51 16 37 H 0.12 -0.94 8.14 -2.38 -0.02 -0.96 16 38 H 0.09 -0.93 7.67 -2.39 -0.02 -0.95 16 39 H 0.18 -0.98 3.13 -2.91 -0.01 -0.99 16 40 H 0.10 0.00 6.07 -2.39 -0.01 -0.01 16 41 H 0.40 -1.79 8.74 -74.06 -0.65 -2.44 16 42 H -0.28 0.11 7.11 99.48 0.71 0.82 16 43 H -0.27 0.49 6.74 99.48 0.67 1.16 16 44 H 0.19 -0.79 5.85 -2.91 -0.02 -0.80 16 45 H 0.12 -0.98 8.10 -2.39 -0.02 -1.00 16 46 H 0.13 -1.66 8.09 -2.39 -0.02 -1.68 16 47 H 0.40 -6.63 9.12 -74.06 -0.68 -7.31 16 48 H 0.07 0.56 7.41 -2.39 -0.02 0.54 16 49 H 0.11 0.49 7.35 -2.39 -0.02 0.47 16 Total: 0.00 -38.93 418.85 0.07 -38.86 By element: Atomic # 1 Polarization: -21.08 SS G_CDS: -1.03 Total: -22.12 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.32 Total: 12.33 kcal Atomic # 7 Polarization: 1.65 SS G_CDS: -2.13 Total: -0.47 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -4.16 Total: -26.92 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: 2.07 Total: -1.67 kcal Total: -38.93 0.07 -38.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12808048_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.346 kcal (2) G-P(sol) polarization free energy of solvation -38.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds