Wall clock time and date at job start Sun Mar 7 2021 00:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86296 * 109.47224 * 2 1 4 4 C 1.50701 * 109.47424 * 239.99984 * 2 1 3 5 5 C 1.38240 * 119.97190 * 119.99723 * 4 2 1 6 6 C 1.38291 * 120.10777 * 179.97438 * 5 4 2 7 7 C 1.38121 * 120.05640 * 0.05364 * 6 5 4 8 8 C 1.38748 * 119.94691 * 359.97291 * 7 6 5 9 9 O 1.35903 * 120.05573 * 180.02562 * 8 7 6 10 10 C 1.42893 * 116.99999 * 0.02562 * 9 8 7 11 11 C 1.53003 * 109.46794 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46816 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99975 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99897 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99703 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46622 * 180.02562 * 15 14 12 17 17 H 1.09006 * 112.85187 * 316.19344 * 16 15 14 18 18 C 1.53779 * 113.69268 * 87.46383 * 16 15 14 19 19 C 1.53784 * 87.08045 * 139.99100 * 18 16 15 20 20 H 1.09004 * 113.61451 * 220.02152 * 19 18 16 21 21 O 1.42896 * 113.61566 * 89.11454 * 19 18 16 22 22 C 1.53779 * 113.61005 * 185.00145 * 16 15 14 23 23 C 1.38168 * 119.96867 * 300.30339 * 4 2 1 24 24 H 0.96696 * 114.00084 * 59.99984 * 1 2 3 25 25 H 1.09005 * 109.47339 * 120.00131 * 2 1 3 26 26 H 1.48496 * 110.00016 * 298.67971 * 3 2 1 27 27 H 1.48501 * 110.00146 * 60.00251 * 3 2 1 28 28 H 1.07995 * 119.94420 * 0.02562 * 5 4 2 29 29 H 1.07999 * 119.97003 * 180.02562 * 6 5 4 30 30 H 1.07998 * 120.02386 * 179.97438 * 7 6 5 31 31 H 1.08996 * 109.47410 * 59.99941 * 10 9 8 32 32 H 1.09004 * 109.47197 * 299.99574 * 10 9 8 33 33 H 1.08996 * 109.47332 * 59.99719 * 11 10 9 34 34 H 1.08996 * 109.47070 * 299.99102 * 11 10 9 35 35 H 0.96996 * 119.99832 * 0.02562 * 14 12 11 36 36 H 1.08996 * 109.47333 * 60.00428 * 15 14 12 37 37 H 1.08996 * 109.46828 * 299.99959 * 15 14 12 38 38 H 1.09002 * 113.61557 * 25.44212 * 18 16 15 39 39 H 1.09004 * 113.61501 * 254.53633 * 18 16 15 40 40 H 0.96699 * 113.99840 * 82.49889 * 21 19 18 41 41 H 1.08997 * 113.61646 * 105.38661 * 22 16 15 42 42 H 1.08998 * 113.69354 * 334.48969 * 22 16 15 43 43 H 1.07997 * 120.03054 * 359.97438 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7261 -0.0380 -2.1400 6 6 3.1891 -0.6873 -3.2698 7 6 2.8575 -2.0095 -3.4926 8 6 2.0595 -2.6864 -2.5815 9 8 1.7323 -3.9875 -2.7982 10 6 2.2451 -4.5964 -3.9849 11 6 1.7740 -6.0503 -4.0565 12 6 2.3143 -6.6923 -5.3083 13 8 3.0076 -6.0501 -6.0686 14 7 2.0272 -7.9802 -5.5831 15 6 2.5530 -8.6045 -6.7997 16 6 2.0817 -10.0583 -6.8714 17 1 2.1638 -10.5775 -5.9164 18 6 0.7133 -10.2316 -7.5511 19 6 1.2939 -11.4871 -8.2229 20 1 0.9924 -11.6044 -9.2639 21 8 1.1191 -12.6798 -7.4554 22 6 2.6794 -10.8420 -8.0519 23 6 1.5921 -2.0314 -1.4516 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5879 2.4585 -1.2242 27 1 1.5615 2.4679 1.2085 28 1 2.9864 0.9958 -1.9676 29 1 3.8102 -0.1600 -3.9787 30 1 3.2190 -2.5159 -4.3753 31 1 3.3346 -4.5676 -3.9664 32 1 1.8820 -4.0538 -4.8578 33 1 0.6846 -6.0788 -4.0752 34 1 2.1368 -6.5932 -3.1838 35 1 1.4725 -8.4937 -4.9752 36 1 3.6424 -8.5758 -6.7812 37 1 2.1900 -8.0617 -7.6725 38 1 0.4702 -9.4337 -8.2529 39 1 -0.0969 -10.4446 -6.8537 40 1 0.2496 -13.0901 -7.5588 41 1 3.4564 -11.5479 -7.7587 42 1 2.9744 -10.2122 -8.8912 43 1 0.9675 -2.5549 -0.7430 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_4549614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:24:06 Heat of formation + Delta-G solvation = -106.411070 kcal Electronic energy + Delta-G solvation = -24052.959483 eV Core-core repulsion = 20258.788338 eV Total energy + Delta-G solvation = -3794.171145 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.44109 -40.99419 -40.18295 -39.16151 -37.40252 -36.53767 -34.96085 -33.35934 -32.49089 -30.94948 -28.98997 -27.01270 -26.71663 -25.31264 -23.69308 -23.39181 -22.11071 -21.53335 -20.50541 -19.40006 -18.38098 -17.96617 -17.73358 -17.55430 -17.19503 -17.11896 -16.79111 -16.53759 -16.22053 -16.01502 -15.61394 -15.48208 -14.93052 -14.70338 -14.63430 -14.43206 -14.13490 -13.99144 -13.76508 -13.38874 -13.22995 -13.02759 -12.90239 -12.85348 -12.41849 -12.17387 -12.00300 -11.86540 -11.83525 -11.58748 -11.20756 -11.13508 -10.69031 -10.64434 -10.17652 -9.94766 -9.28996 -4.90269 0.18367 0.37869 1.29516 1.48807 1.62325 1.69339 1.96608 2.47696 2.64723 3.15025 3.39994 3.50362 3.57042 3.59832 3.64219 3.73723 3.83803 3.86542 3.95436 3.97878 4.08389 4.22437 4.25427 4.27303 4.38316 4.49191 4.54894 4.60944 4.62043 4.67025 4.74396 4.75346 4.82233 4.85654 4.97062 5.03584 5.15314 5.24661 5.29371 5.36742 5.42547 5.44762 5.69001 6.31017 6.42249 6.46652 6.85388 7.11029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.776 3.224 4 C -0.082 4.082 5 C -0.156 4.156 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.116 3.884 9 O -0.325 6.325 10 C 0.075 3.925 11 C -0.133 4.133 12 C 0.518 3.482 13 O -0.585 6.585 14 N -0.715 5.715 15 C 0.130 3.870 16 C -0.110 4.110 17 H 0.099 0.901 18 C -0.160 4.160 19 C 0.073 3.927 20 H 0.080 0.920 21 O -0.573 6.573 22 C -0.131 4.131 23 C -0.141 4.141 24 H 0.386 0.614 25 H 0.126 0.874 26 H -0.282 1.282 27 H -0.302 1.302 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.136 0.864 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.417 0.583 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.398 0.602 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 -2.521 -1.624 3.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.195 4.195 3 Si 0.681 3.319 4 C -0.082 4.082 5 C -0.174 4.174 6 C -0.093 4.093 7 C -0.230 4.230 8 C 0.071 3.929 9 O -0.239 6.239 10 C -0.001 4.001 11 C -0.172 4.172 12 C 0.305 3.695 13 O -0.466 6.466 14 N -0.367 5.367 15 C 0.006 3.994 16 C -0.129 4.129 17 H 0.117 0.883 18 C -0.197 4.197 19 C 0.014 3.986 20 H 0.098 0.902 21 O -0.381 6.381 22 C -0.169 4.169 23 C -0.160 4.160 24 H 0.235 0.765 25 H 0.143 0.857 26 H -0.208 1.208 27 H -0.230 1.230 28 H 0.166 0.834 29 H 0.171 0.829 30 H 0.154 0.846 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.248 0.752 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.380 -1.595 -1.341 2.118 hybrid contribution -1.773 -0.668 -0.657 2.006 sum -1.393 -2.263 -1.998 3.324 Atomic orbital electron populations 1.86568 1.18455 1.80471 1.50134 1.25354 0.83518 1.12272 0.98362 0.93894 0.90304 0.71324 0.76401 1.20175 0.97658 0.93500 0.96893 1.21175 1.00264 1.00864 0.95081 1.21249 0.97610 0.93364 0.97077 1.21553 1.03150 0.97125 1.01138 1.19155 0.95297 0.83488 0.94992 1.85952 1.71387 1.22834 1.43714 1.22432 0.98978 0.93141 0.85534 1.21434 1.04866 0.94037 0.96899 1.20634 0.79607 0.82130 0.87100 1.90735 1.40284 1.63811 1.51735 1.45886 1.53384 1.11655 1.25753 1.21385 0.98549 0.92443 0.86981 1.22662 0.97290 0.93361 0.99542 0.88310 1.23706 0.96722 0.98788 1.00531 1.22746 0.97150 0.84278 0.94447 0.90212 1.86420 1.40850 1.40499 1.70342 1.23104 0.96479 0.98518 0.98784 1.20319 1.03701 0.94689 0.97286 0.76452 0.85653 1.20804 1.23038 0.83413 0.82923 0.84604 0.91578 0.91714 0.85640 0.85624 0.74566 0.92299 0.91672 0.88611 0.90224 0.75174 0.91214 0.87467 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.15 12.76 -148.98 -1.90 -4.05 16 2 C -0.09 -0.06 2.82 71.24 0.20 0.14 16 3 Si 0.78 -1.27 29.79 68.60 2.04 0.77 16 4 C -0.08 -0.18 5.39 -19.88 -0.11 -0.29 16 5 C -0.16 0.00 8.67 22.28 0.19 0.19 16 6 C -0.08 -0.04 10.04 22.25 0.22 0.19 16 7 C -0.21 -0.73 9.04 22.36 0.20 -0.52 16 8 C 0.12 0.67 6.69 22.51 0.15 0.82 16 9 O -0.32 -1.68 10.14 -92.46 -0.94 -2.61 16 10 C 0.07 0.15 4.03 71.98 0.29 0.44 16 11 C -0.13 0.41 6.07 29.85 0.18 0.59 16 12 C 0.52 0.85 7.83 87.66 0.69 1.53 16 13 O -0.59 -6.19 15.98 -3.04 -0.05 -6.24 16 14 N -0.71 2.22 5.56 -463.04 -2.57 -0.35 16 15 C 0.13 -0.22 5.52 86.38 0.48 0.26 16 16 C -0.11 0.45 3.68 -10.27 -0.04 0.41 16 17 H 0.10 -0.33 8.14 -2.38 -0.02 -0.35 16 18 C -0.16 0.89 7.47 31.12 0.23 1.12 16 19 C 0.07 -0.27 5.28 31.12 0.16 -0.10 16 20 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 21 O -0.57 0.72 13.59 -148.98 -2.02 -1.30 16 22 C -0.13 0.39 7.47 31.12 0.23 0.62 16 23 C -0.14 -0.75 9.55 22.37 0.21 -0.53 16 24 H 0.39 -0.65 8.70 -74.06 -0.64 -1.29 16 25 H 0.13 -0.10 7.96 -2.38 -0.02 -0.12 16 26 H -0.28 -0.55 7.11 99.48 0.71 0.16 16 27 H -0.30 -1.79 7.11 99.48 0.71 -1.09 16 28 H 0.15 -0.67 4.87 -2.91 -0.01 -0.69 16 29 H 0.15 -0.69 8.06 -2.91 -0.02 -0.71 16 30 H 0.14 0.28 6.30 -2.91 -0.02 0.26 16 31 H 0.07 0.21 7.62 -2.39 -0.02 0.19 16 32 H 0.06 0.21 7.62 -2.38 -0.02 0.19 16 33 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H 0.42 -3.62 8.47 -92.71 -0.79 -4.40 16 36 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.06 -0.01 7.85 -2.39 -0.02 -0.02 16 38 H 0.10 -0.59 7.90 -2.39 -0.02 -0.61 16 39 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.40 -3.67 9.12 -74.06 -0.68 -4.34 16 41 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.11 -0.54 8.10 -2.39 -0.02 -0.56 16 43 H 0.13 0.73 8.06 -2.91 -0.02 0.70 16 Total: 0.00 -21.12 359.18 -3.16 -24.27 By element: Atomic # 1 Polarization: -14.34 SS G_CDS: -1.02 Total: -15.36 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 3.30 Total: 4.87 kcal Atomic # 7 Polarization: 2.22 SS G_CDS: -2.57 Total: -0.35 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -4.91 Total: -14.21 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 2.04 Total: 0.77 kcal Total: -21.12 -3.16 -24.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_4549614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.136 kcal (2) G-P(sol) polarization free energy of solvation -21.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds