Wall clock time and date at job start Sun Mar 7 2021 00:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36546 * 126.64567 * 2 1 4 4 C 1.46660 * 125.98582 * 0.02562 * 3 2 1 5 5 O 1.21691 * 120.00382 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99751 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99743 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.46811 * 179.97438 * 7 6 4 9 9 H 1.08999 * 112.85006 * 316.19565 * 8 7 6 10 10 C 1.53774 * 113.61238 * 87.50152 * 8 7 6 11 11 C 1.53785 * 87.07929 * 139.98145 * 10 8 7 12 12 H 1.09007 * 113.68828 * 220.00958 * 11 10 8 13 13 O 1.42901 * 113.61544 * 89.11749 * 11 10 8 14 14 C 1.53777 * 113.61150 * 184.99996 * 8 7 6 15 15 O 1.34907 * 108.02708 * 180.02562 * 3 2 1 16 16 C 1.33937 * 109.38189 * 359.97438 * 15 3 2 17 17 C 1.50700 * 125.61751 * 179.97438 * 16 15 3 18 18 O 1.42904 * 109.47010 * 270.03114 * 17 16 15 19 19 C 1.35897 * 117.00004 * 180.02562 * 18 17 16 20 20 C 1.38732 * 120.05687 * 179.97438 * 19 18 17 21 21 C 1.38147 * 119.94607 * 180.02562 * 20 19 18 22 22 C 1.38261 * 120.05350 * 0.02562 * 21 20 19 23 23 C 1.50698 * 119.94321 * 179.97438 * 22 21 20 24 24 O 1.42895 * 109.47614 * 64.99728 * 23 22 21 25 25 Si 1.86300 * 109.47338 * 184.99728 * 23 22 21 26 26 C 1.38268 * 120.11255 * 0.24426 * 22 21 20 27 27 C 1.38144 * 120.05801 * 359.45872 * 26 22 21 28 28 C 1.35125 * 108.76826 * 0.24325 * 16 15 3 29 29 H 1.09003 * 109.47035 * 89.99542 * 1 2 3 30 30 H 1.08992 * 109.47403 * 210.00148 * 1 2 3 31 31 H 1.08999 * 109.46954 * 330.00222 * 1 2 3 32 32 H 0.96995 * 119.99695 * 359.97438 * 6 4 3 33 33 H 1.08994 * 109.47121 * 299.99655 * 7 6 4 34 34 H 1.08999 * 109.47081 * 60.00312 * 7 6 4 35 35 H 1.08997 * 113.61705 * 254.52356 * 10 8 7 36 36 H 1.09001 * 113.62224 * 25.43661 * 10 8 7 37 37 H 0.96693 * 114.00037 * 82.50697 * 13 11 10 38 38 H 1.09001 * 113.61700 * 334.56781 * 14 8 7 39 39 H 1.09002 * 113.61704 * 105.38920 * 14 8 7 40 40 H 1.08994 * 109.47350 * 150.02573 * 17 16 15 41 41 H 1.09000 * 109.47068 * 30.02342 * 17 16 15 42 42 H 1.08003 * 120.02744 * 359.97438 * 20 19 18 43 43 H 1.07997 * 119.97386 * 179.97438 * 21 20 19 44 44 H 1.09001 * 109.47122 * 304.99803 * 23 22 21 45 45 H 0.96698 * 114.00355 * 180.02562 * 24 23 22 46 46 H 1.48506 * 110.00048 * 300.00058 * 25 23 22 47 47 H 1.48502 * 109.99996 * 61.31383 * 25 23 22 48 48 H 1.08005 * 119.97117 * 179.70203 * 26 22 21 49 49 H 1.07993 * 120.03030 * 180.24634 * 27 26 22 50 50 H 1.08001 * 126.44781 * 179.72302 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0956 0.0000 4 6 1.8842 2.4953 0.0005 5 8 0.6968 2.7615 0.0006 6 7 2.7971 3.4869 -0.0001 7 6 2.3598 4.8851 -0.0001 8 6 3.5844 5.8024 -0.0002 9 1 4.3578 5.4760 0.6951 10 6 4.1141 6.1225 -1.4078 11 6 4.3458 7.5584 -0.9085 12 1 4.0887 8.3237 -1.6411 13 8 5.6341 7.7604 -0.3240 14 6 3.2358 7.2951 0.1226 15 8 3.6005 0.6649 -0.0006 16 6 3.6183 -0.6744 -0.0004 17 6 4.8550 -1.5356 -0.0014 18 8 5.2450 -1.8075 -1.3491 19 6 6.3502 -2.5778 -1.5281 20 6 6.7852 -2.8817 -2.8099 21 6 7.9086 -3.6654 -2.9892 22 6 8.5989 -4.1473 -1.8925 23 6 9.8238 -5.0025 -2.0910 24 8 10.8484 -4.2289 -2.7183 25 14 10.4300 -5.6122 -0.4383 26 6 8.1642 -3.8505 -0.6139 27 6 7.0450 -3.0621 -0.4292 28 6 2.3449 -1.1262 -0.0051 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.7436 3.2747 -0.0005 33 1 1.7606 5.0783 -0.8898 34 1 1.7614 5.0786 0.8901 35 1 5.0337 5.5939 -1.6590 36 1 3.3557 6.0483 -2.1872 37 1 6.3363 7.9265 -0.9675 38 1 2.2372 7.5414 -0.2383 39 1 3.4449 7.7128 1.1075 40 1 4.6449 -2.4737 0.5123 41 1 5.6621 -1.0130 0.5119 42 1 6.2455 -2.5065 -3.6669 43 1 8.2474 -3.9025 -3.9869 44 1 9.5735 -5.8545 -2.7231 45 1 11.6679 -4.7168 -2.8776 46 1 10.7747 -4.4599 0.4329 47 1 9.3853 -6.4446 0.2104 48 1 8.7025 -4.2321 0.2412 49 1 6.7081 -2.8273 0.5696 50 1 2.0306 -2.1594 -0.0104 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_4549632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:24:16 Heat of formation + Delta-G solvation = -79.590263 kcal Electronic energy + Delta-G solvation = -32612.150565 eV Core-core repulsion = 27960.244225 eV Total energy + Delta-G solvation = -4651.906340 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -44.01834 -41.42108 -41.02613 -40.13039 -39.22883 -37.25249 -36.70256 -35.50572 -34.86330 -33.34622 -32.22647 -31.73722 -29.80364 -28.90034 -27.63368 -26.74499 -26.19356 -24.38560 -23.73789 -22.86478 -22.46711 -22.20578 -21.12947 -20.51768 -19.61690 -19.37239 -18.37361 -18.06025 -17.85145 -17.56721 -17.36365 -16.96720 -16.79513 -16.61845 -16.45266 -16.03394 -15.88583 -15.64115 -15.42029 -15.23210 -14.81802 -14.55390 -14.45387 -14.39944 -14.12228 -14.03857 -13.95677 -13.90387 -13.78455 -13.68125 -13.43310 -13.40072 -13.01784 -12.88929 -12.52589 -12.27011 -12.22471 -12.03135 -11.91941 -11.87925 -11.42700 -11.22639 -10.88216 -10.70380 -10.40849 -10.28510 -10.18795 -9.78491 -9.35847 -4.93432 -0.34277 0.11067 0.16275 0.88491 1.27525 1.31934 1.64493 1.88494 1.91576 1.96538 2.26318 2.49479 3.12195 3.19106 3.42559 3.47187 3.53685 3.55805 3.58037 3.63300 3.70200 3.72700 3.88895 3.90427 3.94365 3.98329 4.14022 4.19691 4.22205 4.31121 4.38754 4.41677 4.42457 4.53272 4.58052 4.59217 4.67954 4.72130 4.75069 4.80552 4.82440 4.90883 4.96034 5.01270 5.02730 5.06681 5.08524 5.17012 5.29424 5.36427 5.37248 5.55015 5.59930 6.14073 6.22870 6.82261 6.82576 6.92668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.094 4.094 3 C -0.094 4.094 4 C 0.600 3.400 5 O -0.545 6.545 6 N -0.708 5.708 7 C 0.130 3.870 8 C -0.113 4.113 9 H 0.095 0.905 10 C -0.163 4.163 11 C 0.075 3.925 12 H 0.084 0.916 13 O -0.573 6.573 14 C -0.126 4.126 15 O -0.162 6.162 16 C 0.008 3.992 17 C 0.135 3.865 18 O -0.322 6.322 19 C 0.126 3.874 20 C -0.156 4.156 21 C -0.056 4.056 22 C -0.128 4.128 23 C -0.075 4.075 24 O -0.565 6.565 25 Si 0.770 3.230 26 C -0.100 4.100 27 C -0.204 4.204 28 C -0.184 4.184 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.398 0.602 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.129 0.871 41 H 0.099 0.901 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.094 0.906 45 H 0.403 0.597 46 H -0.297 1.297 47 H -0.288 1.288 48 H 0.122 0.878 49 H 0.155 0.845 50 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.033 -3.706 -1.463 6.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.146 4.146 4 C 0.387 3.613 5 O -0.425 6.425 6 N -0.359 5.359 7 C 0.007 3.993 8 C -0.132 4.132 9 H 0.113 0.887 10 C -0.201 4.201 11 C 0.016 3.984 12 H 0.102 0.898 13 O -0.382 6.382 14 C -0.164 4.164 15 O -0.059 6.059 16 C -0.044 4.044 17 C 0.061 3.939 18 O -0.236 6.236 19 C 0.081 3.919 20 C -0.174 4.174 21 C -0.074 4.074 22 C -0.129 4.129 23 C -0.185 4.185 24 O -0.375 6.375 25 Si 0.676 3.324 26 C -0.117 4.117 27 C -0.222 4.222 28 C -0.203 4.203 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.249 0.751 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.248 0.752 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.146 0.854 41 H 0.117 0.883 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.112 0.888 45 H 0.254 0.746 46 H -0.225 1.225 47 H -0.215 1.215 48 H 0.139 0.861 49 H 0.172 0.828 50 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.415 -2.823 -0.172 4.434 hybrid contribution 0.201 0.233 -0.477 0.568 sum 3.616 -2.590 -0.650 4.495 Atomic orbital electron populations 1.20462 0.87204 1.04048 1.03366 1.20991 0.98550 0.91151 0.99036 1.21907 0.81656 0.94994 1.16026 1.16609 0.85607 0.82290 0.76783 1.90853 1.16733 1.82759 1.52150 1.45887 1.10117 1.06330 1.73518 1.21544 0.96937 0.78199 1.02611 1.22681 0.96680 0.94895 0.98932 0.88715 1.23733 1.02318 0.97639 0.96361 1.22743 0.84127 0.95915 0.95619 0.89847 1.86418 1.18531 1.94156 1.39054 1.23091 0.98848 0.94074 1.00366 1.83961 1.28215 1.22556 1.71128 1.22332 0.96850 0.80305 1.04881 1.21222 0.91787 0.98139 0.82726 1.86111 1.42072 1.66303 1.29127 1.19047 0.86586 0.91718 0.94564 1.20748 0.98924 1.02379 0.95380 1.21040 0.92495 0.94197 0.99634 1.19663 0.97865 1.02013 0.93324 1.24755 0.88224 0.95756 1.09723 1.86443 1.26628 1.41850 1.82606 0.94363 0.85372 0.79235 0.73424 1.20874 0.96763 0.97712 0.96380 1.21378 0.98457 1.03144 0.99237 1.21892 0.90750 1.01318 1.06290 0.90314 0.89153 0.90965 0.75077 0.90780 0.91308 0.90781 0.88382 0.75192 0.87006 0.90987 0.85386 0.88340 0.83924 0.83389 0.88819 0.74612 1.22495 1.21514 0.86052 0.82787 0.79807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 9.82 71.24 0.70 0.30 16 2 C -0.09 -0.59 6.20 -19.74 -0.12 -0.71 16 3 C -0.09 -0.74 7.13 24.07 0.17 -0.56 16 4 C 0.60 5.28 7.79 86.44 0.67 5.95 16 5 O -0.54 -7.61 14.74 -4.32 -0.06 -7.68 16 6 N -0.71 -2.30 5.55 -467.09 -2.59 -4.89 16 7 C 0.13 0.15 5.51 86.38 0.48 0.62 16 8 C -0.11 0.15 3.69 -10.27 -0.04 0.11 16 9 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 10 C -0.16 0.45 7.46 31.12 0.23 0.69 16 11 C 0.08 -0.15 5.28 31.12 0.16 0.01 16 12 H 0.08 -0.39 8.14 -2.38 -0.02 -0.41 16 13 O -0.57 -0.30 13.59 -148.98 -2.02 -2.33 16 14 C -0.13 0.21 7.47 31.12 0.23 0.45 16 15 O -0.16 -0.96 10.40 -5.03 -0.05 -1.01 16 16 C 0.01 0.02 6.94 24.97 0.17 0.20 16 17 C 0.14 -0.21 5.27 71.24 0.38 0.17 16 18 O -0.32 -1.26 10.12 -92.39 -0.93 -2.19 16 19 C 0.13 0.51 6.69 22.51 0.15 0.66 16 20 C -0.16 -0.62 9.99 22.37 0.22 -0.40 16 21 C -0.06 -0.18 9.68 22.25 0.22 0.03 16 22 C -0.13 -0.51 5.39 -19.85 -0.11 -0.62 16 23 C -0.07 0.09 2.79 71.24 0.20 0.29 16 24 O -0.57 0.46 12.81 -148.98 -1.91 -1.45 16 25 Si 0.77 -2.09 29.84 68.60 2.05 -0.05 16 26 C -0.10 -0.42 8.66 22.25 0.19 -0.23 16 27 C -0.20 -0.46 9.04 22.37 0.20 -0.26 16 28 C -0.18 -0.43 10.73 22.07 0.24 -0.20 16 29 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.07 0.57 6.44 -2.39 -0.02 0.55 16 32 H 0.41 0.11 8.23 -92.71 -0.76 -0.66 16 33 H 0.07 0.12 7.84 -2.39 -0.02 0.10 16 34 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.10 -0.37 7.90 -2.39 -0.02 -0.39 16 37 H 0.40 -2.93 9.12 -74.06 -0.68 -3.61 16 38 H 0.11 -0.50 8.10 -2.39 -0.02 -0.52 16 39 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.13 -0.90 7.66 -2.39 -0.02 -0.92 16 41 H 0.10 -0.41 7.66 -2.39 -0.02 -0.43 16 42 H 0.14 0.25 8.06 -2.91 -0.02 0.23 16 43 H 0.15 -0.01 8.06 -2.91 -0.02 -0.04 16 44 H 0.09 -0.51 7.96 -2.39 -0.02 -0.52 16 45 H 0.40 -4.55 8.74 -74.06 -0.65 -5.20 16 46 H -0.30 -1.40 7.05 99.48 0.70 -0.70 16 47 H -0.29 -0.72 7.11 99.48 0.71 -0.02 16 48 H 0.12 0.39 4.86 -2.91 -0.01 0.37 16 49 H 0.15 -0.52 6.30 -2.91 -0.02 -0.54 16 50 H 0.18 -0.57 8.06 -2.91 -0.02 -0.60 16 Total: 0.00 -23.93 418.69 -2.22 -26.16 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: -1.04 Total: -13.07 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 4.35 Total: 6.51 kcal Atomic # 7 Polarization: -2.30 SS G_CDS: -2.59 Total: -4.89 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -4.98 Total: -14.66 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.05 Total: -0.05 kcal Total: -23.93 -2.22 -26.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_4549632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.433 kcal (2) G-P(sol) polarization free energy of solvation -23.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds