Wall clock time and date at job start Sun Mar 7 2021 00:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 117.00170 * 2 1 4 4 C 1.39154 * 120.07009 * 180.02562 * 3 2 1 5 5 O 1.35989 * 120.07803 * 359.97438 * 4 3 2 6 6 C 1.42901 * 117.00318 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47119 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00364 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00012 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00119 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47108 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.85043 * 314.66487 * 11 10 9 13 13 C 1.53785 * 113.69093 * 85.93603 * 11 10 9 14 14 C 1.53779 * 87.08093 * 139.99088 * 13 11 10 15 15 H 1.08994 * 113.61314 * 220.01752 * 14 13 11 16 16 O 1.42900 * 113.69149 * 89.12650 * 14 13 11 17 17 C 1.53781 * 113.61293 * 183.47228 * 11 10 9 18 18 C 1.38570 * 119.84916 * 180.27383 * 4 3 2 19 19 C 1.38239 * 120.00167 * 359.49080 * 18 4 3 20 20 N 1.48001 * 119.92711 * 180.25346 * 19 18 4 21 21 O 1.21796 * 120.00431 * 0.25480 * 20 19 18 22 22 O 1.21806 * 119.99827 * 180.25099 * 20 19 18 23 23 C 1.38260 * 120.14400 * 0.51004 * 19 18 4 24 24 C 1.50698 * 119.92496 * 179.72542 * 23 19 18 25 25 O 1.42894 * 109.47464 * 75.02126 * 24 23 19 26 26 Si 1.86296 * 109.47023 * 195.02089 * 24 23 19 27 27 C 1.38238 * 120.14394 * 359.74558 * 23 19 18 28 28 H 1.08992 * 109.47541 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46938 * 300.00344 * 1 2 3 30 30 H 1.08998 * 109.46972 * 59.99770 * 1 2 3 31 31 H 1.09000 * 109.46782 * 59.99825 * 6 5 4 32 32 H 1.08996 * 109.46997 * 299.99741 * 6 5 4 33 33 H 0.96997 * 119.99419 * 359.97438 * 9 7 6 34 34 H 1.09005 * 109.46936 * 59.99437 * 10 9 7 35 35 H 1.09004 * 109.46937 * 300.00111 * 10 9 7 36 36 H 1.09003 * 113.60734 * 254.54208 * 13 11 10 37 37 H 1.08996 * 113.61146 * 25.43706 * 13 11 10 38 38 H 0.96698 * 114.00143 * 82.46281 * 16 14 13 39 39 H 1.09005 * 113.61302 * 334.47929 * 17 11 10 40 40 H 1.08993 * 113.62030 * 105.38774 * 17 11 10 41 41 H 1.08001 * 119.99525 * 179.72452 * 18 4 3 42 42 H 1.09003 * 109.46802 * 315.01758 * 24 23 19 43 43 H 0.96701 * 114.00039 * 59.99447 * 25 24 23 44 44 H 1.48504 * 110.00144 * 179.97438 * 26 24 23 45 45 H 1.48499 * 110.00244 * 301.31993 * 26 24 23 46 46 H 1.08007 * 119.99542 * 179.97438 * 27 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2862 -0.0005 5 8 4.1796 0.1476 -0.0005 6 6 5.6004 0.3005 -0.0005 7 6 6.2518 -1.0584 -0.0012 8 8 5.5670 -2.0593 -0.0011 9 7 7.5957 -1.1614 -0.0008 10 6 8.2291 -2.4824 -0.0008 11 6 9.7503 -2.3187 -0.0009 12 1 10.0955 -1.5713 -0.7154 13 6 10.3540 -2.1533 1.4037 14 6 11.5033 -3.0590 0.9306 15 1 11.8348 -3.7733 1.6841 16 8 12.5852 -2.3461 0.3278 17 6 10.5132 -3.6511 -0.0863 18 6 4.0604 2.5232 0.0052 19 6 3.3031 3.6798 0.0008 20 7 3.9717 5.0001 0.0013 21 8 5.1878 5.0670 0.0009 22 8 3.3057 6.0200 0.0020 23 6 1.9225 3.6057 0.0013 24 6 1.1018 4.8696 0.0028 25 8 1.1338 5.4599 -1.2981 26 14 -0.6590 4.4661 0.4584 27 6 1.2933 2.3748 0.0009 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 5.9066 0.8503 0.8894 32 1 5.9066 0.8502 -0.8905 33 1 8.1434 -0.3609 -0.0004 34 1 7.9230 -3.0321 -0.8910 35 1 7.9225 -3.0324 0.8890 36 1 10.6658 -1.1331 1.6275 37 1 9.7474 -2.5947 2.1944 38 1 13.2113 -1.9713 0.9623 39 1 9.9501 -4.5021 0.2971 40 1 10.9536 -3.8402 -1.0652 41 1 5.1387 2.5838 0.0093 42 1 1.5139 5.5695 0.7297 43 1 0.7815 4.8916 -1.9967 44 1 -1.4787 5.7044 0.4640 45 1 -1.2220 3.4881 -0.5068 46 1 0.2147 2.3197 0.0018 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_4549636.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:24:25 Heat of formation + Delta-G solvation = -118.447703 kcal Electronic energy + Delta-G solvation = -33519.515923 eV Core-core repulsion = 28575.124203 eV Total energy + Delta-G solvation = -4944.391720 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.144 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.39142 -42.12508 -41.16164 -40.34877 -39.55889 -39.23666 -37.73967 -37.24629 -36.52550 -35.00530 -32.70887 -32.58931 -30.65982 -28.93447 -28.12320 -27.88358 -26.69984 -25.79778 -24.05975 -23.46212 -23.13975 -21.88901 -20.79132 -20.56316 -19.85455 -19.54834 -18.82371 -18.67824 -18.55629 -17.97887 -17.79666 -17.60882 -17.44266 -16.98679 -16.83924 -16.49053 -16.36640 -16.20418 -15.92336 -15.67168 -15.40390 -15.05510 -14.80972 -14.50757 -14.44960 -13.97511 -13.79970 -13.76728 -13.47245 -13.36059 -13.07180 -12.96465 -12.70423 -12.49683 -12.48563 -12.37929 -12.25171 -12.18837 -12.11508 -11.85471 -11.70987 -11.20100 -11.13858 -10.65341 -10.64252 -10.49366 -10.24107 -9.50649 -5.00548 -1.35714 -0.44787 0.16888 0.31125 1.13056 1.23448 1.36973 1.46303 1.86533 1.87539 1.93335 2.33772 2.96974 3.15481 3.16243 3.24906 3.40210 3.44288 3.47660 3.60109 3.65170 3.74997 3.86884 3.92754 3.93238 3.96374 4.04942 4.08955 4.24448 4.25530 4.31467 4.37162 4.49026 4.59073 4.62996 4.71055 4.75993 4.76494 4.81628 4.87073 5.04524 5.14139 5.25429 5.27191 5.42897 5.56301 6.03347 6.35866 6.42684 6.48835 6.86761 7.04122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.307 6.307 3 C 0.169 3.831 4 C 0.101 3.899 5 O -0.291 6.291 6 C 0.028 3.972 7 C 0.514 3.486 8 O -0.568 6.568 9 N -0.708 5.708 10 C 0.132 3.868 11 C -0.109 4.109 12 H 0.100 0.900 13 C -0.159 4.159 14 C 0.073 3.927 15 H 0.079 0.921 16 O -0.573 6.573 17 C -0.131 4.131 18 C -0.109 4.109 19 C -0.043 4.043 20 N 0.036 4.964 21 O -0.189 6.189 22 O -0.161 6.161 23 C -0.034 4.034 24 C -0.102 4.102 25 O -0.529 6.529 26 Si 0.775 3.225 27 C -0.172 4.172 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.420 0.580 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.398 0.602 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.183 0.817 42 H 0.129 0.871 43 H 0.383 0.617 44 H -0.295 1.295 45 H -0.249 1.249 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -3.603 3.837 5.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.218 6.218 3 C 0.121 3.879 4 C 0.054 3.946 5 O -0.204 6.204 6 C -0.050 4.050 7 C 0.300 3.700 8 O -0.447 6.447 9 N -0.362 5.362 10 C 0.009 3.991 11 C -0.128 4.128 12 H 0.119 0.881 13 C -0.197 4.197 14 C 0.014 3.986 15 H 0.097 0.903 16 O -0.381 6.381 17 C -0.169 4.169 18 C -0.129 4.129 19 C -0.127 4.127 20 N 0.549 4.451 21 O -0.399 6.399 22 O -0.376 6.376 23 C -0.036 4.036 24 C -0.209 4.209 25 O -0.336 6.336 26 Si 0.676 3.324 27 C -0.190 4.190 28 H 0.141 0.859 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.248 0.752 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.201 0.799 42 H 0.146 0.854 43 H 0.232 0.768 44 H -0.222 1.222 45 H -0.175 1.175 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.105 -5.046 3.367 6.421 hybrid contribution 1.208 1.202 -0.848 1.904 sum -0.897 -3.844 2.519 4.682 Atomic orbital electron populations 1.23749 0.74938 1.06966 1.03756 1.86328 1.24578 1.24650 1.86286 1.18670 0.89177 0.86307 0.93794 1.17957 0.88738 0.85147 1.02739 1.86299 1.18467 1.26879 1.88718 1.22902 0.78780 0.96035 1.07282 1.20330 0.83033 0.90468 0.76166 1.90780 1.63970 1.39850 1.50077 1.45704 1.05152 1.10806 1.74566 1.21410 0.91890 0.83861 1.01979 1.22665 0.91676 0.99367 0.99088 0.88142 1.23702 0.98009 1.01650 0.96312 1.22740 0.86515 0.93961 0.95430 0.90273 1.86421 1.39033 1.73772 1.38913 1.23108 0.96278 0.97149 1.00389 1.20905 1.03010 0.88138 1.00830 1.20533 0.92679 0.81960 1.17526 1.43692 1.00816 1.03382 0.97200 1.94507 0.96508 1.94104 1.54750 1.94577 1.64441 1.25352 1.53232 1.20097 0.90979 0.97382 0.95126 1.25786 1.11736 0.93752 0.89654 1.86772 1.85366 1.45008 1.16455 0.94232 0.70117 0.79742 0.88279 1.21218 1.02223 0.88383 1.07221 0.85938 0.89215 0.90718 0.85211 0.85628 0.74264 0.92251 0.91471 0.90042 0.88538 0.75165 0.87481 0.91232 0.79944 0.85382 0.76799 1.22215 1.17484 0.79576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.81 113.37 1.11 1.12 16 2 O -0.31 -0.19 10.28 -79.63 -0.82 -1.01 16 3 C 0.17 -0.07 6.70 22.57 0.15 0.08 16 4 C 0.10 0.09 6.70 22.57 0.15 0.24 16 5 O -0.29 -1.08 9.45 -67.01 -0.63 -1.71 16 6 C 0.03 -0.11 5.22 71.23 0.37 0.27 16 7 C 0.51 1.07 7.91 87.65 0.69 1.77 16 8 O -0.57 -7.56 16.50 16.00 0.26 -7.30 16 9 N -0.71 2.88 5.56 -463.05 -2.57 0.31 16 10 C 0.13 -0.30 5.50 86.38 0.48 0.18 16 11 C -0.11 0.53 3.69 -10.27 -0.04 0.49 16 12 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 13 C -0.16 1.02 7.47 31.12 0.23 1.25 16 14 C 0.07 -0.30 5.27 31.12 0.16 -0.14 16 15 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 16 O -0.57 0.92 13.59 -148.98 -2.03 -1.10 16 17 C -0.13 0.44 7.47 31.12 0.23 0.68 16 18 C -0.11 0.07 8.54 22.35 0.19 0.26 16 19 C -0.04 -0.13 6.85 36.38 0.25 0.12 16 20 N 0.04 0.32 4.45 -46.46 -0.21 0.12 16 21 O -0.19 -1.94 18.44 18.89 0.35 -1.60 16 22 O -0.16 -1.94 14.62 25.09 0.37 -1.57 16 23 C -0.03 0.02 5.26 -19.86 -0.10 -0.08 16 24 C -0.10 0.01 1.74 71.24 0.12 0.14 16 25 O -0.53 -1.75 11.80 -129.63 -1.53 -3.28 16 26 Si 0.78 -4.35 30.24 68.60 2.07 -2.28 16 27 C -0.17 0.74 7.65 22.35 0.17 0.91 16 28 H 0.12 -1.25 8.14 -2.39 -0.02 -1.27 16 29 H 0.09 -1.16 7.66 -2.38 -0.02 -1.18 16 30 H 0.07 -0.81 7.67 -2.39 -0.02 -0.83 16 31 H 0.13 -1.31 7.65 -2.39 -0.02 -1.33 16 32 H 0.13 -1.18 7.67 -2.39 -0.02 -1.20 16 33 H 0.42 -4.45 8.47 -92.71 -0.79 -5.24 16 34 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 35 H 0.07 -0.04 7.88 -2.39 -0.02 -0.06 16 36 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.10 -0.68 7.92 -2.39 -0.02 -0.70 16 38 H 0.40 -3.78 9.12 -74.06 -0.68 -4.46 16 39 H 0.11 -0.57 8.10 -2.38 -0.02 -0.59 16 40 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.18 -0.93 5.85 -2.91 -0.02 -0.95 16 42 H 0.13 0.30 6.07 -2.39 -0.01 0.29 16 43 H 0.38 -1.63 8.70 -74.06 -0.64 -2.28 16 44 H -0.29 -0.85 7.11 99.48 0.71 -0.14 16 45 H -0.25 1.66 6.68 99.48 0.66 2.32 16 46 H 0.19 -1.83 3.09 -2.91 -0.01 -1.84 16 Total: 0.00 -31.62 389.20 -1.58 -33.20 By element: Atomic # 1 Polarization: -20.02 SS G_CDS: -1.02 Total: -21.05 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 4.18 Total: 7.27 kcal Atomic # 7 Polarization: 3.20 SS G_CDS: -2.78 Total: 0.42 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -4.03 Total: -17.57 kcal Atomic # 14 Polarization: -4.35 SS G_CDS: 2.07 Total: -2.28 kcal Total: -31.62 -1.58 -33.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_4549636.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.252 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds