Wall clock time and date at job start Sun Mar 7 2021 00:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.46958 * 2 1 4 4 C 1.50696 * 109.46829 * 239.99807 * 2 1 3 5 5 C 1.38240 * 119.94368 * 119.98413 * 4 2 1 6 6 C 1.38165 * 120.05880 * 179.97438 * 5 4 2 7 7 C 1.38708 * 119.94235 * 359.74052 * 6 5 4 8 8 O 1.35896 * 120.06061 * 180.25711 * 7 6 5 9 9 C 1.42901 * 116.99665 * 0.27372 * 8 7 6 10 10 C 1.50705 * 109.47242 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99578 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00056 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99875 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47041 * 179.97438 * 13 12 10 15 15 H 1.09000 * 112.85278 * 45.33233 * 14 13 12 16 16 C 1.53789 * 113.61352 * 176.52516 * 14 13 12 17 17 C 1.53777 * 87.07845 * 139.98139 * 16 14 13 18 18 H 1.09002 * 113.61594 * 219.93243 * 17 16 14 19 19 O 1.42905 * 113.61808 * 89.11842 * 17 16 14 20 20 C 1.53777 * 113.61529 * 274.13093 * 14 13 12 21 21 C 1.38760 * 119.88734 * 0.52944 * 7 6 5 22 22 N 1.48007 * 120.02734 * 179.74553 * 21 7 6 23 23 O 1.21803 * 119.99745 * 179.72510 * 22 21 7 24 24 O 1.21799 * 120.00052 * 359.45413 * 22 21 7 25 25 C 1.38119 * 119.94269 * 359.47242 * 21 7 6 26 26 H 0.96704 * 113.99661 * 59.99877 * 1 2 3 27 27 H 1.08995 * 109.46731 * 119.99966 * 2 1 3 28 28 H 1.48496 * 109.99893 * 298.67803 * 3 2 1 29 29 H 1.48501 * 110.00133 * 59.99926 * 3 2 1 30 30 H 1.08004 * 119.97190 * 0.02562 * 5 4 2 31 31 H 1.07996 * 120.03042 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.47293 * 300.00100 * 9 8 7 33 33 H 1.08998 * 109.47047 * 60.00403 * 9 8 7 34 34 H 0.96996 * 120.00073 * 359.97438 * 12 10 9 35 35 H 1.09003 * 109.46869 * 299.99771 * 13 12 10 36 36 H 1.09003 * 109.47562 * 59.99679 * 13 12 10 37 37 H 1.09000 * 113.61477 * 254.52884 * 16 14 13 38 38 H 1.09000 * 113.61009 * 25.35343 * 16 14 13 39 39 H 0.96689 * 114.00542 * 179.97438 * 19 17 16 40 40 H 1.09001 * 113.61633 * 334.57531 * 20 14 13 41 41 H 1.09002 * 113.61368 * 105.47003 * 20 14 13 42 42 H 1.08002 * 119.97455 * 180.22816 * 25 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7257 -0.0375 -2.1398 6 6 3.1879 -0.6867 -3.2685 7 6 2.8587 -2.0164 -3.4860 8 8 3.3163 -2.6588 -4.5926 9 6 4.1371 -1.9052 -5.4873 10 6 4.5464 -2.7756 -6.6475 11 8 4.1716 -3.9277 -6.7029 12 7 5.3288 -2.2736 -7.6234 13 6 5.7262 -3.1196 -8.7515 14 6 6.6050 -2.3128 -9.7092 15 1 7.3701 -1.7319 -9.1941 16 6 7.1474 -3.1363 -10.8893 17 6 6.8783 -1.9049 -11.7702 18 1 6.4742 -2.1504 -12.7523 19 8 7.9788 -0.9956 -11.8347 20 6 5.8061 -1.5005 -10.7421 21 6 2.0565 -2.6881 -2.5745 22 7 1.6986 -4.1054 -2.8063 23 8 0.9986 -4.6960 -2.0033 24 8 2.1001 -4.6798 -3.8026 25 6 1.5970 -2.0346 -1.4478 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5879 2.4585 -1.2242 29 1 1.5615 2.4679 1.2085 30 1 2.9859 0.9965 -1.9675 31 1 3.8081 -0.1603 -3.9789 32 1 3.5774 -1.0462 -5.8576 33 1 5.0265 -1.5596 -4.9604 34 1 5.6282 -1.3521 -7.5791 35 1 6.2852 -3.9792 -8.3817 36 1 4.8364 -3.4642 -9.2784 37 1 8.2047 -3.3855 -10.7985 38 1 6.5294 -3.9982 -11.1409 39 1 7.8158 -0.2193 -12.3876 40 1 4.8200 -1.9135 -10.9542 41 1 5.7821 -0.4311 -10.5326 42 1 0.9756 -2.5580 -0.7361 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12857620_4549638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:24:30 Heat of formation + Delta-G solvation = -86.098378 kcal Electronic energy + Delta-G solvation = -28799.109480 eV Core-core repulsion = 24330.340343 eV Total energy + Delta-G solvation = -4468.769137 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.02294 -41.76917 -41.03167 -40.32244 -39.41998 -37.65221 -37.12924 -36.57966 -35.03764 -33.52482 -32.41941 -30.81488 -28.36798 -27.59234 -26.90935 -26.67631 -24.30040 -23.52274 -22.80643 -21.87495 -20.73619 -20.45922 -19.45270 -19.28234 -18.72031 -18.36303 -18.34647 -18.00058 -17.70216 -17.28014 -17.01036 -16.60184 -16.54617 -16.26925 -16.04330 -15.77950 -15.58258 -15.16776 -14.94999 -14.59837 -14.17101 -14.04034 -13.86338 -13.78997 -13.56821 -13.30575 -13.07932 -12.56812 -12.55318 -12.30908 -12.19974 -12.03800 -12.02310 -11.85143 -11.73472 -11.36346 -11.05777 -10.98052 -10.90197 -10.79148 -10.23456 -9.92304 -5.22954 -1.13613 -0.39016 0.37691 0.52992 0.99553 1.08442 1.32124 1.41862 1.74676 1.92272 2.20118 2.91857 2.96188 3.01257 3.14379 3.21501 3.31522 3.41431 3.46197 3.52943 3.55907 3.59856 3.62616 3.69560 3.77264 4.11691 4.14057 4.16955 4.30789 4.32964 4.42473 4.52728 4.56340 4.66067 4.66629 4.71027 4.86265 4.91814 4.99055 5.12643 5.28325 5.43460 5.70176 6.14709 6.24246 6.52524 6.93617 7.02695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.072 4.072 3 Si 0.688 3.312 4 C -0.156 4.156 5 C -0.024 4.024 6 C -0.210 4.210 7 C 0.200 3.800 8 O -0.253 6.253 9 C 0.031 3.969 10 C 0.512 3.488 11 O -0.497 6.497 12 N -0.726 5.726 13 C 0.129 3.871 14 C -0.118 4.118 15 H 0.101 0.899 16 C -0.124 4.124 17 C 0.077 3.923 18 H 0.071 0.929 19 O -0.552 6.552 20 C -0.168 4.168 21 C -0.076 4.076 22 N 0.028 4.972 23 O -0.177 6.177 24 O -0.118 6.118 25 C 0.009 3.991 26 H 0.378 0.622 27 H 0.126 0.874 28 H -0.256 1.256 29 H -0.251 1.251 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.402 0.598 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.383 0.617 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 10.219 -2.911 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.182 4.182 3 Si 0.588 3.412 4 C -0.158 4.158 5 C -0.042 4.042 6 C -0.229 4.229 7 C 0.150 3.850 8 O -0.163 6.163 9 C -0.048 4.048 10 C 0.295 3.705 11 O -0.369 6.369 12 N -0.380 5.380 13 C 0.006 3.994 14 C -0.136 4.136 15 H 0.119 0.881 16 C -0.162 4.162 17 C 0.018 3.982 18 H 0.089 0.911 19 O -0.358 6.358 20 C -0.206 4.206 21 C -0.160 4.160 22 N 0.548 4.452 23 O -0.385 6.385 24 O -0.342 6.342 25 C -0.010 4.010 26 H 0.226 0.774 27 H 0.144 0.856 28 H -0.181 1.181 29 H -0.175 1.175 30 H 0.166 0.834 31 H 0.174 0.826 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.231 0.769 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.995 9.885 -1.910 11.239 hybrid contribution -1.188 0.589 -0.960 1.637 sum 3.807 10.475 -2.870 11.509 Atomic orbital electron populations 1.86661 1.17224 1.79840 1.49406 1.25072 0.84346 1.11173 0.97581 0.95168 0.91255 0.73753 0.81043 1.20251 1.02284 0.93901 0.99327 1.21259 0.91757 0.99945 0.91219 1.21269 1.07241 0.92578 1.01794 1.18702 0.89842 0.90785 0.85635 1.86505 1.62521 1.37513 1.29720 1.22735 0.96237 0.94908 0.90871 1.19815 0.79467 0.88170 0.83053 1.90873 1.52471 1.17139 1.76418 1.45770 1.52621 1.16185 1.23458 1.21472 0.98622 0.93353 0.85904 1.22754 0.98252 0.98067 0.94556 0.88083 1.23025 1.02950 0.96146 0.94105 1.22713 0.87152 0.91181 0.97197 0.91123 1.86460 1.39108 1.36727 1.73491 1.23786 0.98667 1.00993 0.97137 1.20590 1.10511 0.84048 1.00861 1.43342 0.99196 1.02271 1.00358 1.94557 1.35203 1.66658 1.42130 1.94701 1.54829 1.67650 1.16993 1.20842 0.93506 0.93567 0.93039 0.77422 0.85621 1.18118 1.17507 0.83360 0.82591 0.88120 0.87957 0.76406 0.90775 0.90847 0.89965 0.88215 0.76912 0.89011 0.90737 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.36 12.77 -35.23 -0.45 -0.09 16 2 C -0.07 0.19 2.82 36.00 0.10 0.29 16 3 Si 0.69 -2.60 29.78 -169.99 -5.06 -7.66 16 4 C -0.16 0.34 5.39 -104.60 -0.56 -0.22 16 5 C -0.02 0.09 8.66 -39.61 -0.34 -0.25 16 6 C -0.21 0.71 9.04 -39.43 -0.36 0.36 16 7 C 0.20 0.13 6.67 -39.21 -0.26 -0.13 16 8 O -0.25 -0.55 7.68 -49.77 -0.38 -0.94 16 9 C 0.03 -0.08 5.22 36.01 0.19 0.11 16 10 C 0.51 0.33 7.91 -10.98 -0.09 0.24 16 11 O -0.50 -3.16 16.50 -14.36 -0.24 -3.40 16 12 N -0.73 1.81 5.56 -60.29 -0.33 1.48 16 13 C 0.13 -0.20 5.50 -4.05 -0.02 -0.23 16 14 C -0.12 0.33 3.68 -89.81 -0.33 0.00 16 15 H 0.10 -0.26 8.14 -51.93 -0.42 -0.69 16 16 C -0.12 0.26 7.48 -25.92 -0.19 0.07 16 17 C 0.08 -0.17 5.28 -25.83 -0.14 -0.31 16 18 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 19 O -0.55 0.62 13.59 -35.23 -0.48 0.14 16 20 C -0.17 0.55 7.47 -25.83 -0.19 0.35 16 21 C -0.08 -0.21 6.87 -79.80 -0.55 -0.75 16 22 N 0.03 0.19 4.45 34.03 0.15 0.34 16 23 O -0.18 -1.29 18.45 -29.46 -0.54 -1.83 16 24 O -0.12 -1.02 17.24 -36.49 -0.63 -1.65 16 25 C 0.01 0.00 9.12 -39.61 -0.36 -0.36 16 26 H 0.38 -1.37 8.70 45.56 0.40 -0.97 16 27 H 0.13 -0.41 7.96 -51.93 -0.41 -0.83 16 28 H -0.26 0.59 7.11 56.52 0.40 0.99 16 29 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 30 H 0.15 -0.98 4.87 -52.48 -0.26 -1.24 16 31 H 0.16 -1.09 6.30 -52.49 -0.33 -1.42 16 32 H 0.10 -0.58 7.65 -51.93 -0.40 -0.98 16 33 H 0.10 -0.60 7.67 -51.93 -0.40 -1.00 16 34 H 0.40 -2.31 8.47 -40.82 -0.35 -2.66 16 35 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 36 H 0.07 -0.05 7.87 -51.93 -0.41 -0.46 16 37 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 38 H 0.10 -0.29 8.10 -51.93 -0.42 -0.71 16 39 H 0.38 -1.92 9.12 45.56 0.42 -1.51 16 40 H 0.09 -0.30 7.92 -51.93 -0.41 -0.72 16 41 H 0.07 -0.27 8.14 -51.93 -0.42 -0.69 16 42 H 0.16 0.08 7.61 -52.49 -0.40 -0.32 16 LS Contribution 364.29 15.07 5.49 5.49 Total: 0.00 -13.49 364.29 -9.86 -23.36 By element: Atomic # 1 Polarization: -10.13 SS G_CDS: -4.28 Total: -14.41 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.11 Total: -0.83 kcal Atomic # 7 Polarization: 2.00 SS G_CDS: -0.18 Total: 1.81 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -2.72 Total: -7.76 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: -5.06 Total: -7.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -13.49 -9.86 -23.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_4549638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.741 kcal (2) G-P(sol) polarization free energy of solvation -13.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds