Wall clock time and date at job start Sun Mar 7 2021 00:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.46958 * 2 1 4 4 C 1.50696 * 109.46829 * 239.99807 * 2 1 3 5 5 C 1.38240 * 119.94368 * 119.98413 * 4 2 1 6 6 C 1.38165 * 120.05880 * 179.97438 * 5 4 2 7 7 C 1.38708 * 119.94235 * 359.74052 * 6 5 4 8 8 O 1.35896 * 120.06061 * 180.25711 * 7 6 5 9 9 C 1.42901 * 116.99665 * 0.27372 * 8 7 6 10 10 C 1.50705 * 109.47242 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99578 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00056 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99875 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47041 * 179.97438 * 13 12 10 15 15 H 1.09000 * 112.85278 * 45.33233 * 14 13 12 16 16 C 1.53789 * 113.61352 * 176.52516 * 14 13 12 17 17 C 1.53777 * 87.07845 * 139.98139 * 16 14 13 18 18 H 1.09002 * 113.61594 * 219.93243 * 17 16 14 19 19 O 1.42905 * 113.61808 * 89.11842 * 17 16 14 20 20 C 1.53777 * 113.61529 * 274.13093 * 14 13 12 21 21 C 1.38760 * 119.88734 * 0.52944 * 7 6 5 22 22 N 1.48007 * 120.02734 * 179.74553 * 21 7 6 23 23 O 1.21803 * 119.99745 * 179.72510 * 22 21 7 24 24 O 1.21799 * 120.00052 * 359.45413 * 22 21 7 25 25 C 1.38119 * 119.94269 * 359.47242 * 21 7 6 26 26 H 0.96704 * 113.99661 * 59.99877 * 1 2 3 27 27 H 1.08995 * 109.46731 * 119.99966 * 2 1 3 28 28 H 1.48496 * 109.99893 * 298.67803 * 3 2 1 29 29 H 1.48501 * 110.00133 * 59.99926 * 3 2 1 30 30 H 1.08004 * 119.97190 * 0.02562 * 5 4 2 31 31 H 1.07996 * 120.03042 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.47293 * 300.00100 * 9 8 7 33 33 H 1.08998 * 109.47047 * 60.00403 * 9 8 7 34 34 H 0.96996 * 120.00073 * 359.97438 * 12 10 9 35 35 H 1.09003 * 109.46869 * 299.99771 * 13 12 10 36 36 H 1.09003 * 109.47562 * 59.99679 * 13 12 10 37 37 H 1.09000 * 113.61477 * 254.52884 * 16 14 13 38 38 H 1.09000 * 113.61009 * 25.35343 * 16 14 13 39 39 H 0.96689 * 114.00542 * 179.97438 * 19 17 16 40 40 H 1.09001 * 113.61633 * 334.57531 * 20 14 13 41 41 H 1.09002 * 113.61368 * 105.47003 * 20 14 13 42 42 H 1.08002 * 119.97455 * 180.22816 * 25 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7257 -0.0375 -2.1398 6 6 3.1879 -0.6867 -3.2685 7 6 2.8587 -2.0164 -3.4860 8 8 3.3163 -2.6588 -4.5926 9 6 4.1371 -1.9052 -5.4873 10 6 4.5464 -2.7756 -6.6475 11 8 4.1716 -3.9277 -6.7029 12 7 5.3288 -2.2736 -7.6234 13 6 5.7262 -3.1196 -8.7515 14 6 6.6050 -2.3128 -9.7092 15 1 7.3701 -1.7319 -9.1941 16 6 7.1474 -3.1363 -10.8893 17 6 6.8783 -1.9049 -11.7702 18 1 6.4742 -2.1504 -12.7523 19 8 7.9788 -0.9956 -11.8347 20 6 5.8061 -1.5005 -10.7421 21 6 2.0565 -2.6881 -2.5745 22 7 1.6986 -4.1054 -2.8063 23 8 0.9986 -4.6960 -2.0033 24 8 2.1001 -4.6798 -3.8026 25 6 1.5970 -2.0346 -1.4478 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5879 2.4585 -1.2242 29 1 1.5615 2.4679 1.2085 30 1 2.9859 0.9965 -1.9675 31 1 3.8081 -0.1603 -3.9789 32 1 3.5774 -1.0462 -5.8576 33 1 5.0265 -1.5596 -4.9604 34 1 5.6282 -1.3521 -7.5791 35 1 6.2852 -3.9792 -8.3817 36 1 4.8364 -3.4642 -9.2784 37 1 8.2047 -3.3855 -10.7985 38 1 6.5294 -3.9982 -11.1409 39 1 7.8158 -0.2193 -12.3876 40 1 4.8200 -1.9135 -10.9542 41 1 5.7821 -0.4311 -10.5326 42 1 0.9756 -2.5580 -0.7361 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12857620_4549638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:24:29 Heat of formation + Delta-G solvation = -93.705820 kcal Electronic energy + Delta-G solvation = -28799.439364 eV Core-core repulsion = 24330.340343 eV Total energy + Delta-G solvation = -4469.099021 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.29739 -41.78674 -40.95033 -40.20405 -39.36487 -37.62579 -37.48602 -36.49892 -34.97213 -33.49204 -32.27971 -30.69730 -28.20923 -27.82368 -26.69827 -26.50441 -24.22542 -23.42696 -22.80103 -21.82648 -20.61332 -20.45831 -19.78026 -19.22239 -18.65958 -18.64368 -18.25940 -17.84585 -17.62299 -17.24040 -16.89401 -16.46280 -16.35373 -16.10044 -15.92015 -15.66553 -15.46254 -15.05710 -14.76049 -14.48854 -14.06291 -13.91912 -13.74411 -13.66625 -13.35863 -13.22306 -12.94370 -12.71089 -12.39107 -12.37243 -12.27984 -12.22950 -12.15597 -11.83353 -11.81367 -11.17920 -11.08024 -10.84116 -10.75557 -10.62331 -10.19745 -9.80216 -4.91507 -1.31719 -0.24543 0.15390 0.35146 1.20998 1.26976 1.44995 1.60852 2.02063 2.04902 2.33063 3.11010 3.17201 3.23900 3.34316 3.44479 3.51884 3.62068 3.69898 3.71367 3.76240 3.77478 3.92486 3.98748 4.00641 4.27304 4.29315 4.39450 4.50863 4.55846 4.63756 4.65384 4.78029 4.83722 4.84410 4.88144 5.05792 5.07387 5.16691 5.19153 5.28741 5.46015 5.75405 6.41211 6.43737 6.44886 6.88355 7.13986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.091 4.091 3 Si 0.790 3.210 4 C -0.148 4.148 5 C -0.004 4.004 6 C -0.189 4.189 7 C 0.193 3.807 8 O -0.293 6.293 9 C 0.026 3.974 10 C 0.505 3.495 11 O -0.569 6.569 12 N -0.706 5.706 13 C 0.131 3.869 14 C -0.106 4.106 15 H 0.105 0.895 16 C -0.134 4.134 17 C 0.073 3.927 18 H 0.077 0.923 19 O -0.572 6.572 20 C -0.158 4.158 21 C -0.105 4.105 22 N 0.034 4.966 23 O -0.202 6.202 24 O -0.175 6.175 25 C -0.003 4.003 26 H 0.389 0.611 27 H 0.127 0.873 28 H -0.261 1.261 29 H -0.310 1.310 30 H 0.189 0.811 31 H 0.206 0.794 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.422 0.578 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.398 0.602 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 14.558 -3.239 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.198 4.198 3 Si 0.692 3.308 4 C -0.149 4.149 5 C -0.021 4.021 6 C -0.207 4.207 7 C 0.144 3.856 8 O -0.203 6.203 9 C -0.051 4.051 10 C 0.291 3.709 11 O -0.447 6.447 12 N -0.361 5.361 13 C 0.007 3.993 14 C -0.124 4.124 15 H 0.123 0.877 16 C -0.172 4.172 17 C 0.014 3.986 18 H 0.095 0.905 19 O -0.380 6.380 20 C -0.195 4.195 21 C -0.190 4.190 22 N 0.544 4.456 23 O -0.410 6.410 24 O -0.389 6.389 25 C -0.022 4.022 26 H 0.239 0.761 27 H 0.145 0.855 28 H -0.186 1.186 29 H -0.238 1.238 30 H 0.206 0.794 31 H 0.223 0.777 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.249 0.751 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.447 14.212 -2.329 15.779 hybrid contribution -1.612 -0.604 -0.780 1.890 sum 4.835 13.609 -3.109 14.773 Atomic orbital electron populations 1.86635 1.18506 1.80461 1.50331 1.25523 0.83603 1.13106 0.97548 0.94163 0.89269 0.69889 0.77435 1.20380 1.02117 0.92550 0.99855 1.21716 0.89343 1.01293 0.89747 1.21812 1.06185 0.90345 1.02377 1.18980 0.89600 0.92096 0.84970 1.86471 1.63363 1.39783 1.30638 1.23117 0.98082 0.94413 0.89496 1.20557 0.78671 0.87687 0.84017 1.90852 1.55359 1.20339 1.78111 1.45627 1.51242 1.16912 1.22278 1.21375 0.98132 0.93422 0.86333 1.22650 0.98025 0.97730 0.94023 0.87698 1.23112 1.02315 0.96802 0.95002 1.22759 0.87226 0.90881 0.97717 0.90488 1.86417 1.39814 1.37655 1.74134 1.23714 0.98254 1.01460 0.96103 1.20872 1.13412 0.81478 1.03250 1.43912 0.98221 1.04007 0.99458 1.94502 1.35959 1.68326 1.42183 1.94681 1.56556 1.69466 1.18159 1.20847 0.94157 0.94797 0.92414 0.76146 0.85527 1.18616 1.23818 0.79422 0.77669 0.83854 0.83669 0.74024 0.92587 0.92009 0.91203 0.87868 0.75148 0.88877 0.89627 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.86 12.77 -148.98 -1.90 -1.04 16 2 C -0.09 0.59 2.82 71.23 0.20 0.79 16 3 Si 0.79 -8.16 29.78 68.60 2.04 -6.12 16 4 C -0.15 0.89 5.39 -19.85 -0.11 0.78 16 5 C 0.00 0.04 8.66 22.25 0.19 0.24 16 6 C -0.19 2.11 9.04 22.36 0.20 2.31 16 7 C 0.19 0.08 6.67 22.51 0.15 0.23 16 8 O -0.29 -1.32 7.68 -63.36 -0.49 -1.80 16 9 C 0.03 -0.19 5.22 71.24 0.37 0.18 16 10 C 0.50 0.69 7.91 87.66 0.69 1.38 16 11 O -0.57 -8.80 16.50 15.99 0.26 -8.53 16 12 N -0.71 4.09 5.56 -463.05 -2.57 1.52 16 13 C 0.13 -0.32 5.50 86.38 0.47 0.16 16 14 C -0.11 0.62 3.68 -10.27 -0.04 0.59 16 15 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 16 C -0.13 0.49 7.48 31.12 0.23 0.72 16 17 C 0.07 -0.36 5.28 31.18 0.16 -0.19 16 18 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 19 O -0.57 1.68 13.59 -148.98 -2.02 -0.34 16 20 C -0.16 1.19 7.47 31.18 0.23 1.42 16 21 C -0.10 -0.73 6.87 36.47 0.25 -0.48 16 22 N 0.03 0.58 4.45 -46.24 -0.21 0.37 16 23 O -0.20 -3.80 18.45 18.88 0.35 -3.46 16 24 O -0.18 -3.85 17.24 25.61 0.44 -3.41 16 25 C 0.00 -0.01 9.12 22.25 0.20 0.20 16 26 H 0.39 -3.08 8.70 -74.05 -0.64 -3.72 16 27 H 0.13 -0.89 7.96 -2.39 -0.02 -0.91 16 28 H -0.26 2.40 7.11 99.48 0.71 3.11 16 29 H -0.31 0.05 7.11 99.48 0.71 0.75 16 30 H 0.19 -3.71 4.87 -2.91 -0.01 -3.72 16 31 H 0.21 -4.37 6.30 -2.91 -0.02 -4.39 16 32 H 0.14 -2.32 7.65 -2.39 -0.02 -2.34 16 33 H 0.15 -2.36 7.67 -2.39 -0.02 -2.38 16 34 H 0.42 -5.94 8.47 -92.71 -0.79 -6.73 16 35 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.06 0.01 7.87 -2.39 -0.02 0.00 16 37 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.10 -0.49 8.10 -2.39 -0.02 -0.51 16 39 H 0.40 -4.36 9.12 -74.06 -0.68 -5.04 16 40 H 0.09 -0.69 7.92 -2.39 -0.02 -0.71 16 41 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.15 0.55 7.61 -2.91 -0.02 0.53 16 Total: 0.00 -40.78 364.29 -1.83 -42.60 By element: Atomic # 1 Polarization: -27.16 SS G_CDS: -0.96 Total: -28.12 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 3.22 Total: 8.33 kcal Atomic # 7 Polarization: 4.67 SS G_CDS: -2.78 Total: 1.89 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -3.36 Total: -18.59 kcal Atomic # 14 Polarization: -8.16 SS G_CDS: 2.04 Total: -6.12 kcal Total: -40.78 -1.83 -42.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12857620_4549638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.103 kcal (2) G-P(sol) polarization free energy of solvation -40.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds