Wall clock time and date at job start Sat Mar 6 2021 18:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 C 1.53007 * 109.46741 * 240.00438 * 2 1 3 5 5 O 1.45196 * 109.47337 * 120.00714 * 2 1 3 6 6 C 1.34226 * 117.00388 * 59.99389 * 5 2 1 7 7 O 1.20831 * 119.99851 * 0.02562 * 6 5 2 8 8 C 1.50693 * 120.00263 * 180.02562 * 6 5 2 9 9 H 1.08995 * 112.85195 * 48.80773 * 8 6 5 10 10 C 1.53785 * 113.61331 * 180.02562 * 8 6 5 11 11 C 1.53781 * 87.08277 * 140.06613 * 10 8 6 12 12 H 1.09002 * 113.61228 * 220.01683 * 11 10 8 13 13 N 1.46500 * 113.61711 * 89.19510 * 11 10 8 14 14 C 1.34778 * 119.99919 * 156.52821 * 13 11 10 15 15 O 1.21277 * 119.99902 * 0.02562 * 14 13 11 16 16 C 1.50701 * 119.99998 * 180.02562 * 14 13 11 17 17 N 1.46498 * 109.47380 * 180.02562 * 16 14 13 18 18 C 1.36834 * 125.06433 * 265.02800 * 17 16 14 19 19 C 1.34232 * 109.93915 * 179.97438 * 18 17 16 20 20 C 1.50698 * 126.50244 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47003 * 105.02866 * 20 19 18 22 22 Si 1.86304 * 109.47105 * 345.03635 * 20 19 18 23 23 C 1.46490 * 106.99992 * 0.02562 * 19 18 17 24 24 C 1.39595 * 134.03804 * 180.02562 * 23 19 18 25 25 C 1.36668 * 119.76029 * 179.23524 * 24 23 19 26 26 C 1.38786 * 120.53036 * 0.64744 * 25 24 23 27 27 C 1.37792 * 120.66462 * 359.58117 * 26 25 24 28 28 C 1.37694 * 125.06210 * 84.71897 * 17 16 14 29 29 C 1.53776 * 113.69232 * 277.53547 * 8 6 5 30 30 H 1.09002 * 109.46818 * 299.99891 * 1 2 3 31 31 H 1.09004 * 109.47136 * 59.99621 * 1 2 3 32 32 H 1.08997 * 109.47641 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47192 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47720 * 300.00023 * 3 2 1 35 35 H 1.09002 * 109.47146 * 60.00310 * 3 2 1 36 36 H 1.08993 * 109.46858 * 299.99762 * 4 2 1 37 37 H 1.08997 * 109.47352 * 60.00484 * 4 2 1 38 38 H 1.09005 * 109.46899 * 179.97438 * 4 2 1 39 39 H 1.08993 * 113.61827 * 25.50972 * 10 8 6 40 40 H 1.09006 * 113.68471 * 254.62198 * 10 8 6 41 41 H 0.96998 * 119.99853 * 336.53388 * 13 11 10 42 42 H 1.08998 * 109.46903 * 300.00568 * 16 14 13 43 43 H 1.09005 * 109.46573 * 60.00422 * 16 14 13 44 44 H 1.08001 * 125.02924 * 359.97438 * 18 17 16 45 45 H 1.09000 * 109.47454 * 225.03365 * 20 19 18 46 46 H 0.96705 * 113.99963 * 179.97438 * 21 20 19 47 47 H 1.48490 * 110.00293 * 59.99397 * 22 20 19 48 48 H 1.48498 * 110.00216 * 181.31937 * 22 20 19 49 49 H 1.08003 * 120.11528 * 359.96109 * 24 23 19 50 50 H 1.08001 * 119.73376 * 180.21115 * 25 24 23 51 51 H 1.08001 * 119.66646 * 179.60581 * 26 25 24 52 52 H 1.08006 * 120.10905 * 179.97438 * 27 26 25 53 53 H 1.09003 * 113.61687 * 105.45764 * 29 8 6 54 54 H 1.09009 * 113.61565 * 334.56112 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 2.0140 -0.6846 1.1854 6 6 1.6533 -1.9685 1.3377 7 8 0.9565 -2.5028 0.5077 8 6 2.1174 -2.7436 2.5439 9 1 1.9533 -2.2089 3.4794 10 6 1.6198 -4.1985 2.5700 11 6 3.0128 -4.5827 3.0961 12 1 3.4012 -5.5072 2.6688 13 7 3.1203 -4.5418 4.5566 14 6 4.0627 -5.2734 5.1837 15 8 4.8219 -5.9653 4.5388 16 6 4.1730 -5.2318 6.6861 17 7 5.2659 -6.1056 7.1199 18 6 5.1208 -7.4057 7.5213 19 6 6.3163 -7.9189 7.8518 20 6 6.5866 -9.3177 8.3428 21 8 7.1811 -10.0843 7.2935 22 14 4.9844 -10.1140 8.8622 23 6 7.3083 -6.8608 7.6459 24 6 8.6923 -6.7828 7.8106 25 6 9.3471 -5.6219 7.5084 26 6 8.6454 -4.5151 7.0516 27 6 7.2785 -4.5687 6.8863 28 6 6.5928 -5.7428 7.1789 29 6 3.5378 -3.3153 2.4020 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7488 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 1.3994 -4.6024 1.5820 40 1 0.8183 -4.3743 3.2875 41 1 2.5133 -3.9882 5.0723 42 1 4.3757 -4.2101 7.0073 43 1 3.2370 -5.5729 7.1286 44 1 4.1831 -7.9398 7.5656 45 1 7.2659 -9.2790 9.1943 46 1 7.3832 -10.9974 7.5394 47 1 4.0494 -10.1727 7.7101 48 1 5.2412 -11.4826 9.3783 49 1 9.2451 -7.6406 8.1644 50 1 10.4183 -5.5632 7.6327 51 1 9.1761 -3.6027 6.8230 52 1 6.7413 -3.7018 6.5306 53 1 4.2855 -2.7766 2.9842 54 1 3.8418 -3.4779 1.3679 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12862686_9818708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 18:08:45 Heat of formation + Delta-G solvation = -51.223261 kcal Electronic energy + Delta-G solvation = -35821.352775 eV Core-core repulsion = 31112.857564 eV Total energy + Delta-G solvation = -4708.495211 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.192 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.54266 -42.20360 -41.00850 -39.45616 -38.08506 -37.83646 -37.62553 -35.13255 -34.56087 -33.99456 -31.43143 -30.27035 -29.22755 -28.44844 -28.35989 -27.71706 -26.88527 -25.70124 -23.86520 -23.40353 -22.71767 -21.80328 -21.06615 -20.52392 -20.24745 -18.90830 -18.49879 -18.18290 -18.06952 -17.66952 -17.58735 -17.13691 -16.83335 -16.42774 -16.38136 -15.91606 -15.78468 -15.65280 -15.40819 -15.05333 -14.92535 -14.76702 -14.70766 -14.59730 -14.37059 -14.11866 -13.85423 -13.60478 -13.52828 -13.47500 -13.21434 -13.12943 -13.10644 -12.97748 -12.91681 -12.71749 -12.55719 -12.52625 -12.50662 -12.14006 -12.09315 -11.89140 -11.70750 -11.67266 -11.44614 -11.18817 -10.97535 -10.53454 -10.34278 -10.23064 -9.14144 -8.61817 -4.90442 0.15526 0.65429 1.11303 1.32000 1.38899 1.42345 1.62266 1.65487 1.73601 1.98372 2.12670 2.95130 3.20175 3.29594 3.52892 3.57163 3.61003 3.65017 3.69450 3.73286 3.73944 3.81733 3.86514 3.89612 4.01258 4.04030 4.18010 4.24633 4.29727 4.42027 4.44102 4.51599 4.53524 4.58706 4.58920 4.65233 4.69675 4.72781 4.74546 4.77718 4.80793 4.81816 4.84521 4.89290 4.91814 4.96871 5.07119 5.16007 5.18428 5.22939 5.42767 5.52877 5.52920 5.67764 5.74661 5.77034 6.18425 6.25204 6.45724 6.67855 6.76295 7.12148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.355 6.355 6 C 0.468 3.532 7 O -0.526 6.526 8 C -0.103 4.103 9 H 0.154 0.846 10 C -0.114 4.114 11 C 0.124 3.876 12 H 0.084 0.916 13 N -0.692 5.692 14 C 0.493 3.507 15 O -0.572 6.572 16 C 0.088 3.912 17 N -0.466 5.466 18 C 0.074 3.926 19 C -0.183 4.183 20 C -0.058 4.058 21 O -0.565 6.565 22 Si 0.782 3.218 23 C -0.118 4.118 24 C -0.088 4.088 25 C -0.154 4.154 26 C -0.108 4.108 27 C -0.132 4.132 28 C 0.091 3.909 29 C -0.129 4.129 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.424 0.576 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.193 0.807 45 H 0.079 0.921 46 H 0.389 0.611 47 H -0.291 1.291 48 H -0.287 1.287 49 H 0.120 0.880 50 H 0.137 0.863 51 H 0.146 0.854 52 H 0.136 0.864 53 H 0.090 0.910 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 6.374 5.979 10.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.272 6.272 6 C 0.313 3.687 7 O -0.415 6.415 8 C -0.122 4.122 9 H 0.172 0.828 10 C -0.152 4.152 11 C 0.018 3.982 12 H 0.103 0.897 13 N -0.346 5.346 14 C 0.279 3.721 15 O -0.450 6.450 16 C -0.036 4.036 17 N -0.149 5.149 18 C -0.051 4.051 19 C -0.190 4.190 20 C -0.166 4.166 21 O -0.375 6.375 22 Si 0.686 3.314 23 C -0.122 4.122 24 C -0.107 4.107 25 C -0.173 4.173 26 C -0.127 4.127 27 C -0.153 4.153 28 C -0.014 4.014 29 C -0.168 4.168 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.263 0.737 42 H 0.169 0.831 43 H 0.185 0.815 44 H 0.210 0.790 45 H 0.097 0.903 46 H 0.239 0.761 47 H -0.218 1.218 48 H -0.214 1.214 49 H 0.138 0.862 50 H 0.155 0.845 51 H 0.164 0.836 52 H 0.154 0.846 53 H 0.109 0.891 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.755 5.864 4.722 9.477 hybrid contribution 0.818 -0.806 -1.052 1.558 sum -4.937 5.058 3.670 7.964 Atomic orbital electron populations 1.22451 0.93839 1.03609 1.03765 1.22418 0.94611 0.93245 0.82565 1.21878 1.02317 0.91257 1.04132 1.22467 1.01687 1.02091 0.97608 1.86563 1.69689 1.25409 1.45546 1.23941 0.76492 0.80524 0.87756 1.90597 1.36280 1.70351 1.44258 1.22775 0.98478 0.95028 0.95918 0.82831 1.23246 0.96611 0.91720 1.03614 1.21620 0.97228 0.98548 0.80835 0.89736 1.45432 1.35423 1.47474 1.06230 1.21583 0.80052 0.78878 0.91584 1.90830 1.43528 1.42175 1.68475 1.22040 0.92609 0.98787 0.90179 1.43403 1.04952 1.10973 1.55562 1.21915 0.99704 0.84294 0.99236 1.19757 0.92252 0.94371 1.12597 1.24481 1.09170 0.91027 0.91919 1.86627 1.82529 1.27984 1.40343 0.94259 0.74930 0.79904 0.82321 1.19366 0.93979 0.93929 1.04954 1.20445 0.92211 0.98413 0.99581 1.20926 1.00827 0.93233 1.02276 1.21147 0.93219 0.99356 0.98946 1.20262 0.94639 0.95709 1.04644 1.18412 0.83959 0.96245 1.02748 1.23314 0.94879 0.96503 1.02099 0.91457 0.89748 0.91813 0.91399 0.88853 0.90990 0.91882 0.89673 0.91960 0.88675 0.87477 0.73692 0.83062 0.81491 0.78989 0.90304 0.76135 1.21784 1.21360 0.86213 0.84490 0.83578 0.84604 0.89116 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.18 8.37 71.98 0.60 0.43 16 2 C 0.11 0.13 1.13 -10.79 -0.01 0.12 16 3 C -0.14 0.41 8.85 71.98 0.64 1.04 16 4 C -0.18 -0.37 8.37 71.98 0.60 0.23 16 5 O -0.35 -0.91 9.89 -51.38 -0.51 -1.42 16 6 C 0.47 1.02 6.80 71.23 0.48 1.50 16 7 O -0.53 -3.89 11.40 21.95 0.25 -3.64 16 8 C -0.10 0.53 4.15 -11.02 -0.05 0.48 16 9 H 0.15 -1.73 8.14 -2.39 -0.02 -1.75 16 10 C -0.11 0.59 7.14 31.12 0.22 0.81 16 11 C 0.12 -0.39 4.30 45.51 0.20 -0.20 16 12 H 0.08 0.27 7.50 -2.39 -0.02 0.25 16 13 N -0.69 5.32 5.27 -440.09 -2.32 3.00 16 14 C 0.49 -0.46 7.90 87.66 0.69 0.23 16 15 O -0.57 -7.03 16.04 -3.02 -0.05 -7.08 16 16 C 0.09 -0.67 6.48 85.63 0.55 -0.11 16 17 N -0.47 -1.21 2.27 -520.00 -1.18 -2.39 16 18 C 0.07 0.27 9.89 83.00 0.82 1.09 16 19 C -0.18 -1.46 5.61 -18.63 -0.10 -1.57 16 20 C -0.06 -0.26 3.05 71.24 0.22 -0.04 16 21 O -0.57 -4.85 12.86 -148.98 -1.92 -6.76 16 22 Si 0.78 -0.66 30.79 68.60 2.11 1.45 16 23 C -0.12 -1.30 6.35 -20.20 -0.13 -1.43 16 24 C -0.09 -0.86 10.05 22.23 0.22 -0.64 16 25 C -0.15 -1.01 9.97 22.03 0.22 -0.79 16 26 C -0.11 -0.51 10.01 22.30 0.22 -0.29 16 27 C -0.13 -0.68 10.00 22.37 0.22 -0.45 16 28 C 0.09 0.72 6.80 39.03 0.27 0.99 16 29 C -0.13 0.40 7.43 31.11 0.23 0.63 16 30 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.06 0.34 5.89 -2.39 -0.01 0.33 16 33 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 34 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.06 0.41 5.89 -2.39 -0.01 0.40 16 37 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 39 H 0.09 -0.08 7.44 -2.39 -0.02 -0.10 16 40 H 0.11 -0.99 8.14 -2.38 -0.02 -1.01 16 41 H 0.42 -6.80 8.71 -92.71 -0.81 -7.61 16 42 H 0.15 -2.08 8.14 -2.39 -0.02 -2.10 16 43 H 0.17 -2.70 8.12 -2.38 -0.02 -2.72 16 44 H 0.19 -0.50 6.30 -2.91 -0.02 -0.51 16 45 H 0.08 0.13 7.96 -2.39 -0.02 0.11 16 46 H 0.39 -0.15 8.74 -74.05 -0.65 -0.80 16 47 H -0.29 -1.42 7.04 99.48 0.70 -0.72 16 48 H -0.29 -0.94 7.11 99.48 0.71 -0.23 16 49 H 0.12 0.96 8.06 -2.91 -0.02 0.94 16 50 H 0.14 0.31 8.06 -2.91 -0.02 0.28 16 51 H 0.15 -0.09 8.06 -2.91 -0.02 -0.11 16 52 H 0.14 -0.04 8.06 -2.91 -0.02 -0.07 16 53 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 54 H 0.08 -0.02 8.10 -2.38 -0.02 -0.04 16 Total: 0.00 -33.84 441.74 2.02 -31.82 By element: Atomic # 1 Polarization: -16.51 SS G_CDS: -0.49 Total: -17.01 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 6.13 Total: 2.03 kcal Atomic # 7 Polarization: 4.11 SS G_CDS: -3.50 Total: 0.61 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -2.22 Total: -18.90 kcal Atomic # 14 Polarization: -0.66 SS G_CDS: 2.11 Total: 1.45 kcal Total: -33.84 2.02 -31.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12862686_9818708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.405 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds