Wall clock time and date at job start Sat Mar 6 2021 20:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08992 * 109.47494 * 357.09583 * 3 2 1 5 5 C 1.53002 * 109.46751 * 117.09511 * 3 2 1 6 6 C 1.52997 * 109.46817 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47452 * 300.00239 * 6 5 3 8 8 H 1.09002 * 109.46935 * 300.00125 * 7 6 5 9 9 N 1.46496 * 109.47414 * 180.02562 * 7 6 5 10 10 C 1.34778 * 120.00072 * 154.99744 * 9 7 6 11 11 O 1.21612 * 120.00049 * 359.97438 * 10 9 7 12 12 C 1.47386 * 119.99887 * 180.02562 * 10 9 7 13 13 C 1.36408 * 127.18764 * 179.71341 * 12 10 9 14 14 C 1.50698 * 125.80688 * 359.97438 * 13 12 10 15 15 O 1.42900 * 109.46994 * 90.00205 * 14 13 12 16 16 C 1.35900 * 116.99916 * 180.02562 * 15 14 13 17 17 C 1.38734 * 120.05460 * 359.72301 * 16 15 14 18 18 C 1.38146 * 119.94012 * 179.74703 * 17 16 15 19 19 C 1.38262 * 120.05963 * 0.50651 * 18 17 16 20 20 C 1.50701 * 119.94699 * 179.74861 * 19 18 17 21 21 O 1.42897 * 109.46735 * 245.02343 * 20 19 18 22 22 Si 1.86299 * 109.47126 * 5.02068 * 20 19 18 23 23 C 1.38265 * 120.10893 * 359.77090 * 19 18 17 24 24 C 1.38141 * 120.05807 * 359.97438 * 23 19 18 25 25 O 1.33662 * 108.39117 * 179.83487 * 13 12 10 26 26 C 1.34216 * 110.90917 * 0.44312 * 25 13 12 27 27 C 1.34176 * 109.12260 * 359.73127 * 26 25 13 28 28 C 1.52999 * 109.47159 * 59.99536 * 7 6 5 29 29 C 1.52997 * 109.47317 * 300.00546 * 28 7 6 30 30 H 4.18743 * 15.03943 * 359.97438 * 4 2 1 31 31 H 1.08993 * 109.47662 * 299.99863 * 5 3 2 32 32 H 1.09002 * 109.47075 * 60.00368 * 5 3 2 33 33 H 1.09002 * 109.47153 * 60.00231 * 6 5 3 34 34 H 1.09001 * 109.47289 * 180.02562 * 6 5 3 35 35 H 0.97007 * 119.99693 * 334.99885 * 9 7 6 36 36 H 1.09004 * 109.47187 * 210.00182 * 14 13 12 37 37 H 1.08992 * 109.46723 * 330.00175 * 14 13 12 38 38 H 1.08003 * 120.02629 * 0.02562 * 17 16 15 39 39 H 1.08002 * 119.96838 * 180.23562 * 18 17 16 40 40 H 1.09003 * 109.47223 * 125.02361 * 20 19 18 41 41 H 0.96699 * 114.00280 * 59.99888 * 21 20 19 42 42 H 1.48502 * 109.99731 * 58.68145 * 22 20 19 43 43 H 1.48494 * 110.00120 * 179.97438 * 22 20 19 44 44 H 1.08002 * 119.97350 * 179.97438 * 23 19 18 45 45 H 1.08001 * 120.03121 * 180.02562 * 24 23 19 46 46 H 1.08000 * 125.43757 * 179.72301 * 26 25 13 47 47 H 1.07999 * 127.02027 * 179.97438 * 27 26 25 48 48 H 1.08996 * 109.46929 * 179.97438 * 28 7 6 49 49 H 1.09002 * 109.46716 * 60.00455 * 28 7 6 50 50 H 1.09002 * 109.47153 * 299.99641 * 29 28 7 51 51 H 1.09001 * 109.46832 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0099 -1.0254 0.0521 5 6 3.1557 0.6579 -1.2842 6 6 4.6856 0.6592 -1.2840 7 6 5.1949 1.4434 -0.0728 8 1 4.8307 2.4694 -0.1251 9 7 6.6598 1.4451 -0.0729 10 6 7.3326 2.4347 0.5472 11 8 6.7235 3.3265 1.1064 12 6 8.8064 2.4367 0.5466 13 6 9.6299 3.3612 1.1193 14 6 9.1878 4.5854 1.8788 15 8 9.0491 4.2623 3.2639 16 6 8.6534 5.2627 4.0942 17 6 8.4094 6.5308 3.5872 18 6 8.0023 7.5448 4.4325 19 6 7.8481 7.2994 5.7844 20 6 7.4093 8.4088 6.7051 21 8 8.4602 8.7067 7.6264 22 14 7.0133 9.9280 5.7023 23 6 8.0962 6.0378 6.2930 24 6 8.4984 5.0191 5.4512 25 8 10.8956 2.9951 0.8948 26 6 10.9464 1.8593 0.1814 27 6 9.6962 1.4461 -0.0767 28 6 4.6851 0.7862 1.2113 29 6 3.1552 0.7849 1.2111 30 1 -1.0500 -0.0011 0.0005 31 1 2.7926 0.0996 -2.1470 32 1 2.7919 1.6841 -1.3363 33 1 5.0498 -0.3669 -1.2317 34 1 5.0488 1.1278 -2.1986 35 1 7.1456 0.7340 -0.5194 36 1 9.9317 5.3736 1.7624 37 1 8.2301 4.9291 1.4882 38 1 8.5334 6.7240 2.5318 39 1 7.8086 8.5312 4.0377 40 1 6.5220 8.0950 7.2551 41 1 9.2825 8.9933 7.2059 42 1 5.9438 9.6226 4.7184 43 1 6.5787 11.0293 6.5986 44 1 7.9754 5.8486 7.3495 45 1 8.6917 4.0338 5.8489 46 1 11.8494 1.3581 -0.1345 47 1 9.4034 0.5658 -0.6296 48 1 5.0483 1.3446 2.0741 49 1 5.0493 -0.2399 1.2636 50 1 2.7910 1.8110 1.1588 51 1 2.7921 0.3163 2.1258 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_4549634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:17:15 Heat of formation + Delta-G solvation = -8.976800 kcal Electronic energy + Delta-G solvation = -34230.958384 eV Core-core repulsion = 29644.343984 eV Total energy + Delta-G solvation = -4586.614399 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.166 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.70987 -41.31759 -41.04148 -39.40634 -39.18481 -37.19122 -35.93529 -34.28036 -33.36945 -32.82024 -32.00224 -31.88060 -31.39624 -30.16860 -27.85968 -26.20755 -25.18363 -23.87378 -23.80541 -23.51258 -22.41577 -21.96359 -21.47809 -20.68671 -19.51828 -19.16797 -19.04648 -18.26325 -17.44780 -17.40627 -17.20596 -16.95926 -16.75132 -16.46612 -16.13970 -15.96823 -15.85663 -15.71373 -15.46178 -15.27149 -15.20089 -14.76074 -14.64036 -14.37214 -14.21847 -14.10969 -13.93548 -13.82263 -13.70117 -13.49149 -13.28418 -13.10695 -12.79677 -12.34651 -12.27807 -12.19683 -12.09342 -12.06956 -11.95794 -11.78840 -11.66077 -11.15845 -10.98424 -10.97321 -10.91372 -10.42210 -10.16120 -10.08070 -9.82104 -9.26443 -5.01866 -0.03415 0.24680 0.26953 1.04629 1.31669 1.51760 1.63381 1.84139 1.87366 1.95597 2.04891 2.12277 2.46805 2.62288 3.34735 3.35880 3.54750 3.56910 3.64374 3.67915 3.70165 3.73966 3.79033 3.89869 3.93911 4.04946 4.10752 4.12817 4.19846 4.27071 4.33604 4.38662 4.40139 4.43110 4.46621 4.47814 4.59274 4.64025 4.68856 4.71620 4.81529 4.93087 4.98863 5.02125 5.07754 5.09724 5.11852 5.19620 5.22836 5.26038 5.28154 5.33604 5.45205 5.45791 5.66365 5.89532 6.24042 6.46206 6.67388 6.78742 7.12299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.210 4.210 3 C 0.021 3.979 4 H 0.107 0.893 5 C -0.103 4.103 6 C -0.115 4.115 7 C 0.147 3.853 8 H 0.067 0.933 9 N -0.703 5.703 10 C 0.583 3.417 11 O -0.572 6.572 12 C -0.224 4.224 13 C 0.039 3.961 14 C 0.135 3.865 15 O -0.323 6.323 16 C 0.125 3.875 17 C -0.205 4.205 18 C -0.074 4.074 19 C -0.161 4.161 20 C -0.069 4.069 21 O -0.556 6.556 22 Si 0.776 3.224 23 C -0.059 4.059 24 C -0.163 4.163 25 O -0.177 6.177 26 C -0.012 4.012 27 C -0.196 4.196 28 C -0.122 4.122 29 C -0.103 4.103 30 H 0.237 0.763 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.416 0.584 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.105 0.895 41 H 0.395 0.605 42 H -0.289 1.289 43 H -0.298 1.298 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.252 0.748 47 H 0.193 0.807 48 H 0.046 0.954 49 H 0.083 0.917 50 H 0.055 0.945 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -3.516 -6.919 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.210 4.210 3 C 0.003 3.997 4 H 0.124 0.876 5 C -0.141 4.141 6 C -0.153 4.153 7 C 0.042 3.958 8 H 0.085 0.915 9 N -0.354 5.354 10 C 0.371 3.629 11 O -0.453 6.453 12 C -0.228 4.228 13 C -0.014 4.014 14 C 0.061 3.939 15 O -0.237 6.237 16 C 0.080 3.920 17 C -0.224 4.224 18 C -0.092 4.092 19 C -0.162 4.162 20 C -0.179 4.179 21 O -0.364 6.364 22 Si 0.682 3.318 23 C -0.077 4.077 24 C -0.182 4.182 25 O -0.073 6.073 26 C -0.078 4.078 27 C -0.215 4.215 28 C -0.161 4.161 29 C -0.141 4.141 30 H 0.254 0.746 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.253 0.747 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.122 0.878 41 H 0.245 0.755 42 H -0.216 1.216 43 H -0.226 1.226 44 H 0.156 0.844 45 H 0.150 0.850 46 H 0.268 0.732 47 H 0.210 0.790 48 H 0.065 0.935 49 H 0.102 0.898 50 H 0.074 0.926 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.212 -2.539 -6.210 7.438 hybrid contribution -0.603 -0.900 0.175 1.098 sum 2.609 -3.440 -6.034 7.420 Atomic orbital electron populations 1.25687 0.96988 1.00457 0.99919 1.23599 0.95247 1.00976 1.01190 1.18444 0.83637 1.01510 0.96103 0.87554 1.21467 0.94905 1.01197 0.96574 1.21758 0.95019 1.01757 0.96753 1.21016 0.78556 1.00334 0.95866 0.91456 1.45715 1.07204 1.26871 1.55587 1.17464 0.85897 0.81674 0.77815 1.90780 1.70185 1.38274 1.46102 1.21401 0.93754 0.99253 1.08440 1.22047 0.81599 0.97619 1.00098 1.21148 1.02879 0.91499 0.78418 1.86050 1.82803 1.36488 1.18359 1.19178 0.95135 0.87368 0.90349 1.21430 1.06843 0.92278 1.01814 1.21014 0.96631 0.99209 0.92302 1.20352 1.04992 0.96216 0.94649 1.25108 0.93307 1.03329 0.96117 1.86460 1.25275 1.89354 1.35293 0.93813 0.85824 0.74638 0.77488 1.20945 0.95415 0.91390 0.99939 1.20620 1.05855 1.01154 0.90576 1.83795 1.27728 1.37989 1.57760 1.24920 1.01684 0.85240 0.95932 1.23260 0.91252 1.01802 1.05160 1.21845 0.95027 1.01800 0.97379 1.21442 0.94818 1.00216 0.97649 0.74616 0.89901 0.92197 0.88780 0.89724 0.74659 0.87924 0.87657 0.83334 0.83088 0.87801 0.75494 1.21615 1.22586 0.84399 0.84979 0.73189 0.78976 0.93497 0.89824 0.92607 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.61 19.25 74.32 1.43 0.82 16 2 C -0.21 -0.82 12.56 31.13 0.39 -0.43 16 3 C 0.02 -0.01 2.57 -12.60 -0.03 -0.04 16 4 H 0.11 -0.35 8.14 -2.39 -0.02 -0.36 16 5 C -0.10 0.31 5.16 30.59 0.16 0.46 16 6 C -0.12 0.67 5.39 30.60 0.16 0.84 16 7 C 0.15 -0.06 2.45 44.99 0.11 0.05 16 8 H 0.07 0.34 7.58 -2.39 -0.02 0.32 16 9 N -0.70 0.73 5.07 -445.84 -2.26 -1.53 16 10 C 0.58 3.55 7.78 86.65 0.67 4.22 16 11 O -0.57 -7.78 14.51 -4.07 -0.06 -7.83 16 12 C -0.22 -0.78 6.31 -18.99 -0.12 -0.90 16 13 C 0.04 0.20 7.00 25.26 0.18 0.37 16 14 C 0.13 0.67 4.74 71.24 0.34 1.01 16 15 O -0.32 -3.09 10.12 -92.42 -0.94 -4.03 16 16 C 0.12 0.98 6.69 22.51 0.15 1.13 16 17 C -0.21 -0.79 9.04 22.37 0.20 -0.59 16 18 C -0.07 -0.13 8.66 22.25 0.19 0.06 16 19 C -0.16 -0.53 5.35 -19.85 -0.11 -0.64 16 20 C -0.07 -0.12 2.80 71.24 0.20 0.08 16 21 O -0.56 -1.12 12.83 -148.98 -1.91 -3.03 16 22 Si 0.78 -0.30 29.80 68.60 2.04 1.75 16 23 C -0.06 -0.30 9.68 22.25 0.22 -0.09 16 24 C -0.16 -1.18 9.99 22.37 0.22 -0.96 16 25 O -0.18 -0.40 10.52 4.37 0.05 -0.35 16 26 C -0.01 0.06 12.03 66.89 0.80 0.86 16 27 C -0.20 0.83 10.60 23.65 0.25 1.08 16 28 C -0.12 -0.10 5.50 30.59 0.17 0.06 16 29 C -0.10 -0.14 5.16 30.59 0.16 0.02 16 30 H 0.24 -0.80 7.80 -4.42 -0.03 -0.83 16 31 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 34 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.42 -3.15 7.77 -92.70 -0.72 -3.87 16 36 H 0.10 -0.02 7.65 -2.39 -0.02 -0.04 16 37 H 0.11 0.67 6.02 -2.39 -0.01 0.65 16 38 H 0.15 -0.06 6.30 -2.91 -0.02 -0.07 16 39 H 0.15 -0.53 4.90 -2.91 -0.01 -0.55 16 40 H 0.10 0.33 7.96 -2.39 -0.02 0.31 16 41 H 0.40 -2.43 8.70 -74.06 -0.64 -3.08 16 42 H -0.29 -1.41 7.11 99.48 0.71 -0.71 16 43 H -0.30 -2.02 7.11 99.48 0.71 -1.32 16 44 H 0.14 0.45 8.06 -2.91 -0.02 0.42 16 45 H 0.13 0.80 8.06 -2.91 -0.02 0.78 16 46 H 0.25 -3.50 8.06 -2.91 -0.02 -3.53 16 47 H 0.19 -2.24 7.74 -2.91 -0.02 -2.26 16 48 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 50 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 51 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 Total: 0.00 -25.58 425.64 2.32 -23.27 By element: Atomic # 1 Polarization: -15.30 SS G_CDS: -0.36 Total: -15.66 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.75 Total: 7.43 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -2.26 Total: -1.53 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -2.86 Total: -15.25 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.04 Total: 1.75 kcal Total: -25.58 2.32 -23.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_4549634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.289 kcal (2) G-P(sol) polarization free energy of solvation -25.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds