Wall clock time and date at job start Sat Mar 6 2021 20:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.09009 * 109.46979 * 55.30880 * 3 2 1 5 5 C 1.53000 * 109.46786 * 175.30528 * 3 2 1 6 6 C 1.53000 * 109.47028 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47432 * 300.00037 * 6 5 3 8 8 H 1.08999 * 109.47088 * 300.00159 * 7 6 5 9 9 N 1.46498 * 109.47315 * 179.97438 * 7 6 5 10 10 C 1.34775 * 120.00149 * 85.00083 * 9 7 6 11 11 O 1.21285 * 119.99392 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00229 * 179.97438 * 10 9 7 13 13 O 1.42904 * 109.46954 * 180.02562 * 12 10 9 14 14 C 1.35898 * 116.99683 * 180.02562 * 13 12 10 15 15 C 1.38716 * 120.05385 * 179.97438 * 14 13 12 16 16 N 1.48005 * 120.02697 * 0.03634 * 15 14 13 17 17 O 1.21798 * 119.99827 * 179.97438 * 16 15 14 18 18 O 1.21795 * 119.99699 * 359.97438 * 16 15 14 19 19 C 1.38166 * 119.94507 * 180.02562 * 15 14 13 20 20 C 1.38247 * 120.05350 * 359.97438 * 19 15 14 21 21 C 1.50699 * 119.94334 * 180.02562 * 20 19 15 22 22 O 1.42894 * 109.47188 * 64.99933 * 21 20 19 23 23 Si 1.86298 * 109.46950 * 185.00606 * 21 20 19 24 24 C 1.38295 * 120.11188 * 0.27779 * 20 19 15 25 25 C 1.38122 * 120.05087 * 359.44970 * 24 20 19 26 26 C 1.53000 * 109.47044 * 59.99973 * 7 6 5 27 27 C 1.52993 * 109.47327 * 295.30618 * 3 2 1 28 28 H 4.18743 * 15.03993 * 0.02562 * 4 2 1 29 29 H 1.08999 * 109.47215 * 300.00134 * 5 3 2 30 30 H 1.08999 * 109.47026 * 60.00281 * 5 3 2 31 31 H 1.09008 * 109.47325 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.47114 * 60.00180 * 6 5 3 33 33 H 0.96999 * 120.00154 * 264.99715 * 9 7 6 34 34 H 1.08990 * 109.46761 * 60.00114 * 12 10 9 35 35 H 1.08994 * 109.46865 * 299.99836 * 12 10 9 36 36 H 1.08000 * 119.97323 * 179.97438 * 19 15 14 37 37 H 1.09006 * 109.46662 * 305.00202 * 21 20 19 38 38 H 0.96709 * 113.99337 * 60.00344 * 22 21 20 39 39 H 1.48506 * 109.99834 * 180.02562 * 23 21 20 40 40 H 1.48502 * 110.00011 * 301.31529 * 23 21 20 41 41 H 1.07995 * 119.96850 * 179.70130 * 24 20 19 42 42 H 1.08011 * 120.02352 * 180.25735 * 25 24 20 43 43 H 1.09007 * 109.47367 * 59.99577 * 26 7 6 44 44 H 1.08994 * 109.47530 * 179.97438 * 26 7 6 45 45 H 1.09003 * 109.47460 * 60.00292 * 27 3 2 46 46 H 1.08997 * 109.47440 * 299.99681 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.5841 -0.8451 5 6 3.1552 1.4386 -0.1181 6 6 4.6852 1.4393 -0.1187 7 6 5.1961 0.8227 1.1850 8 1 4.8329 1.4074 2.0302 9 7 6.6611 0.8229 1.1841 10 6 7.3352 1.9175 1.5887 11 8 6.7288 2.9024 1.9540 12 6 8.8422 1.9175 1.5883 13 8 9.3187 3.1810 2.0561 14 6 10.6659 3.3480 2.1170 15 6 11.1975 4.5498 2.5613 16 7 10.2978 5.6515 2.9703 17 8 10.7651 6.7063 3.3608 18 8 9.0901 5.5032 2.9164 19 6 12.5677 4.7174 2.6219 20 6 13.4086 3.6885 2.2407 21 6 14.9026 3.8738 2.3083 22 8 15.3010 4.0381 3.6707 23 14 15.7472 2.3764 1.5904 24 6 12.8811 2.4912 1.7925 25 6 11.5121 2.3168 1.7354 26 6 4.6869 -0.6152 1.3031 27 6 3.1563 -0.6157 1.3040 28 1 -1.0500 0.0001 -0.0007 29 1 2.7917 1.8777 -1.0471 30 1 2.7916 2.0233 0.7269 31 1 5.0481 2.4637 -0.2033 32 1 5.0485 0.8546 -0.9639 33 1 7.1460 0.0351 0.8923 34 1 9.2052 1.7442 0.5754 35 1 9.2056 1.1269 2.2448 36 1 12.9820 5.6530 2.9673 37 1 15.1851 4.7587 1.7379 38 1 15.0807 3.2866 4.2382 39 1 17.2212 2.5465 1.6518 40 1 15.3453 1.1587 2.3394 41 1 13.5401 1.6907 1.4907 42 1 11.1006 1.3801 1.3892 43 1 5.0500 -1.1999 0.4578 44 1 5.0511 -1.0546 2.2316 45 1 2.7935 -1.6401 1.3881 46 1 2.7928 -0.0309 2.1490 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12865462_4549638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:17:25 Heat of formation + Delta-G solvation = -23.796824 kcal Electronic energy + Delta-G solvation = -31571.673541 eV Core-core repulsion = 27012.298294 eV Total energy + Delta-G solvation = -4559.375247 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.145 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.29023 -41.79437 -41.01792 -39.79897 -39.06197 -37.62058 -37.46641 -35.89347 -33.67809 -33.40723 -32.27330 -31.83206 -30.86738 -28.99637 -27.81124 -26.56483 -24.51194 -23.78954 -23.65893 -22.78999 -21.61614 -21.14156 -20.51821 -19.77348 -19.19350 -19.05031 -18.63511 -18.49445 -18.20564 -17.55636 -17.30619 -17.06109 -16.36448 -16.15108 -16.04184 -15.79035 -15.64520 -15.37611 -15.17844 -15.05544 -14.78043 -14.16429 -14.00461 -13.95052 -13.76382 -13.65795 -13.24022 -13.22015 -12.76564 -12.70499 -12.38739 -12.35994 -12.29815 -12.26832 -12.19732 -12.14911 -11.92809 -11.77776 -11.62027 -11.03901 -10.93416 -10.88069 -10.84046 -10.72261 -10.12766 -9.80277 -4.90408 -1.30959 -0.23502 0.16165 0.36108 1.22573 1.27766 1.49083 1.60008 1.85999 1.89415 2.01993 2.05922 2.34026 3.11996 3.24917 3.35036 3.40873 3.46630 3.62131 3.69035 3.72082 3.74845 3.76776 3.94768 4.03504 4.09229 4.16855 4.24228 4.29386 4.39103 4.39767 4.42713 4.47775 4.56258 4.64863 4.68877 4.76197 4.84890 5.02325 5.06701 5.08487 5.11860 5.14121 5.19914 5.22433 5.30604 5.36517 5.48387 5.77470 6.41880 6.45969 6.50157 6.69360 7.20740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.210 4.210 3 C 0.022 3.978 4 H 0.110 0.890 5 C -0.106 4.106 6 C -0.122 4.122 7 C 0.146 3.854 8 H 0.059 0.941 9 N -0.703 5.703 10 C 0.506 3.494 11 O -0.567 6.567 12 C 0.024 3.976 13 O -0.292 6.292 14 C 0.195 3.805 15 C -0.105 4.105 16 N 0.034 4.966 17 O -0.204 6.204 18 O -0.175 6.175 19 C -0.003 4.003 20 C -0.147 4.147 21 C -0.092 4.092 22 O -0.551 6.551 23 Si 0.790 3.210 24 C -0.006 4.006 25 C -0.188 4.188 26 C -0.113 4.113 27 C -0.106 4.106 28 H 0.236 0.764 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.424 0.576 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.389 0.611 39 H -0.310 1.310 40 H -0.257 1.257 41 H 0.188 0.812 42 H 0.207 0.793 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 -14.954 -7.085 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.210 4.210 3 C 0.004 3.996 4 H 0.128 0.872 5 C -0.144 4.144 6 C -0.161 4.161 7 C 0.041 3.959 8 H 0.077 0.923 9 N -0.357 5.357 10 C 0.292 3.708 11 O -0.444 6.444 12 C -0.052 4.052 13 O -0.202 6.202 14 C 0.145 3.855 15 C -0.191 4.191 16 N 0.544 4.456 17 O -0.411 6.411 18 O -0.388 6.388 19 C -0.022 4.022 20 C -0.149 4.149 21 C -0.199 4.199 22 O -0.359 6.359 23 Si 0.693 3.307 24 C -0.023 4.023 25 C -0.206 4.206 26 C -0.151 4.151 27 C -0.144 4.144 28 H 0.253 0.747 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.263 0.737 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.143 0.857 38 H 0.239 0.761 39 H -0.238 1.238 40 H -0.183 1.183 41 H 0.205 0.795 42 H 0.224 0.776 43 H 0.119 0.881 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.656 -14.684 -7.013 17.228 hybrid contribution -0.882 1.004 1.555 2.051 sum 4.774 -13.680 -5.458 15.483 Atomic orbital electron populations 1.25686 0.97037 1.00184 1.00452 1.23670 0.95368 1.01020 1.00919 1.18467 0.83447 0.97347 1.00364 0.87167 1.21462 0.95299 0.95463 1.02204 1.21854 0.94708 1.01087 0.98411 1.20973 0.78946 0.98164 0.97801 0.92284 1.45672 1.06943 1.16272 1.66819 1.20551 0.89885 0.83267 0.77093 1.90857 1.70885 1.35128 1.47528 1.23146 0.91566 0.85076 1.05455 1.86476 1.17435 1.37114 1.79216 1.18980 0.84197 0.91569 0.90791 1.20876 0.90855 0.87840 1.19483 1.43917 1.01962 1.02052 0.97685 1.94501 1.80064 1.16438 1.50091 1.94680 0.97437 1.88132 1.58570 1.20859 0.87979 1.01251 0.92157 1.20365 0.96863 0.93818 1.03820 1.25521 0.91521 1.15521 0.87299 1.86641 1.82873 1.46851 1.19577 0.94115 0.76385 0.72423 0.87821 1.21761 0.95310 0.96014 0.89233 1.21813 0.93064 0.99676 1.06088 1.21757 0.94615 0.93891 1.04808 1.21497 0.95386 1.01719 0.95824 0.74748 0.91372 0.93096 0.93449 0.89007 0.73743 0.83548 0.83883 0.83254 0.85686 0.76137 1.23833 1.18298 0.79492 0.77600 0.88142 0.89686 0.89957 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.55 19.25 74.32 1.43 0.88 16 2 C -0.21 -0.67 12.56 31.13 0.39 -0.28 16 3 C 0.02 -0.04 2.56 -12.60 -0.03 -0.08 16 4 H 0.11 -0.61 8.14 -2.38 -0.02 -0.63 16 5 C -0.11 0.00 5.16 30.59 0.16 0.16 16 6 C -0.12 0.26 5.49 30.59 0.17 0.42 16 7 C 0.15 -0.50 2.45 44.99 0.11 -0.39 16 8 H 0.06 0.24 7.58 -2.39 -0.02 0.22 16 9 N -0.70 5.36 5.08 -442.54 -2.25 3.12 16 10 C 0.51 0.08 7.87 87.66 0.69 0.77 16 11 O -0.57 -8.25 16.16 15.99 0.26 -7.99 16 12 C 0.02 -0.20 5.22 71.24 0.37 0.17 16 13 O -0.29 -1.14 7.68 -63.38 -0.49 -1.62 16 14 C 0.19 -0.01 6.67 22.51 0.15 0.14 16 15 C -0.11 -0.70 6.87 36.48 0.25 -0.45 16 16 N 0.03 0.57 4.45 -46.24 -0.21 0.37 16 17 O -0.20 -3.83 18.45 18.89 0.35 -3.48 16 18 O -0.17 -3.81 17.24 25.62 0.44 -3.37 16 19 C 0.00 -0.01 9.19 22.25 0.20 0.20 16 20 C -0.15 0.91 5.35 -19.85 -0.11 0.81 16 21 C -0.09 0.61 2.80 71.24 0.20 0.81 16 22 O -0.55 0.93 12.83 -148.98 -1.91 -0.98 16 23 Si 0.79 -8.34 29.87 68.60 2.05 -6.29 16 24 C -0.01 0.07 8.66 22.26 0.19 0.27 16 25 C -0.19 2.19 9.04 22.36 0.20 2.39 16 26 C -0.11 1.00 5.39 30.61 0.17 1.17 16 27 C -0.11 0.47 5.16 30.61 0.16 0.62 16 28 H 0.24 -0.82 7.80 -4.42 -0.03 -0.85 16 29 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.05 0.18 8.14 -2.38 -0.02 0.17 16 32 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.42 -7.21 8.60 -92.71 -0.80 -8.00 16 34 H 0.15 -2.57 7.66 -2.39 -0.02 -2.58 16 35 H 0.14 -2.45 7.66 -2.39 -0.02 -2.47 16 36 H 0.15 0.52 7.61 -2.91 -0.02 0.50 16 37 H 0.13 -0.87 7.96 -2.38 -0.02 -0.89 16 38 H 0.39 -3.21 8.70 -74.05 -0.64 -3.86 16 39 H -0.31 0.11 7.11 99.48 0.71 0.81 16 40 H -0.26 2.58 7.01 99.48 0.70 3.28 16 41 H 0.19 -3.70 4.84 -2.91 -0.01 -3.71 16 42 H 0.21 -4.52 6.30 -2.90 -0.02 -4.54 16 43 H 0.10 -1.37 8.14 -2.38 -0.02 -1.38 16 44 H 0.08 -0.85 8.14 -2.39 -0.02 -0.87 16 45 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 Total: 0.00 -41.01 393.58 2.58 -38.43 By element: Atomic # 1 Polarization: -25.41 SS G_CDS: -0.37 Total: -25.78 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 4.70 Total: 7.60 kcal Atomic # 7 Polarization: 5.94 SS G_CDS: -2.45 Total: 3.48 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -1.35 Total: -17.44 kcal Atomic # 14 Polarization: -8.34 SS G_CDS: 2.05 Total: -6.29 kcal Total: -41.01 2.58 -38.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12865462_4549638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.633 kcal (2) G-P(sol) polarization free energy of solvation -41.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds